rna6395, rna6395 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6395
Unique Name	rna6395
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	612
Alignment location	CM002468.1:418891..424031 +

Link to JBrowse

Properties


Property Name	Value
Product	otu-like cysteine type protease
Orig transcript id	gnl\|cribi\|Naga_100047g42.6074.mrna
Orig protein id	gnl\|cribi\|Naga_100047g42.6074
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:418891..424031 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g42	gene6179	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6395	rna6395-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24311.1	cds6380	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:418891..424031+
coding sequence from alignment at CM002468.1:418891..424031+

mRNA sequence

>rna6395 ID=rna6395|Name=rna6395|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
CACTTCGTAGAGAATGATAACCTTGAACGCCAGACAAAGGCGACATACGT
CTTCGTCAGGCGCTCTCCTCAAATGGATGCTTATGTTGTCGTCAGCACGC
TTTGTTGACTCTTCTAGCGCACCAACCAACGCTCCCCTCCCCTTCCTTTT
CATGAATGTAGGATCGTCGTCTTTTACTCATGCCCGGAGTTCAAGTCAGT
TAAAAGTTATATTGGGCAGCTGCATGGACGACACAGAGGCAGTTGTGATG
AAGCGAAAGCCCCGCAATCAGACCAAAGCTTTCAAGATACTCGGCAAATT
TTTGTCAGGAAGCTCTTCGGGTGTTTCCGAGAAACAGCTTCCACCAGACA
CGCTTCACCAGCTCCAAACGATACGCAATGCGTTGGAGAGAATAAAATCC
TATCACGGCAAACTCAGTAAGTAGACTTAGCCTTACATAGATGGCCACGA
GGACGATAGTGCGAGCGCGGCTTTCGGTGTAAGACCAGAAGCATAGACGA
AGCACACCATACGAGTAGAAGCGAGAACAAGGAAATAAAAGATCATAAAT
ACATGCACCAAATCATTGCTTCATAGAAACGGTGAATTATCGGTCAATCA
TGTCTACATCCT

protein sequence of rna6395

>rna6395-protein ID=rna6395-protein|Name=rna6395|organism=Nannochloropsis gaditana|type=polypeptide|length=930bp
MNGPLTRFSFPDAIPVVVPCKVSWDFRGQRRHRIFSRILKVAFIKRFAVS
GAVRTVITSTHVGSGRRRPPKEEEEQKGAERSVRPRRGDNSTSVRSASHR
PGAMTQSFDPETEAQRQEDQHLRGMRHAHHPQGRSRMDEGVEARNTAFTR
SRLGDEHGGRHDNAEDVGAFGEELDPMLDSITDTRASGVAHTARNLDGYS
AATSITNRVSEVSDLHSRRPSSLRTSIQPSCPTPGLNENDNESMGKNAND
AAGSEALGPSVSLSPCRTSWPVSGDGATPYFEGMLLEALDSVDVWCEAEV
IGVNTASRHVRVTYLYWSDKYDEDIPLFSTRLAPYPTHTFQPGRPETLQV
RQRVEVEVEGADQARKWVHAEVKGVSGDGRQVLVACKGRGRLEEWLPRDS
ARIRAYGRFKKCLAAKQSRYGKAALAATTGSHVVNGEVHAGLKRPPLRLV
GGSNQHYPQPPQSRSQTRVDLNDLHRRAIAASSDRYSAYQAALSRHGLSI
QPIEGDGNCLFRSVSHQVYGTDAHHMLIRDKCMAYMDLERQYFEPYVVGG
MSEFLRYLELKRRDGVWGDDPEVQALCEMYDRPAEIWAFDAAEGAKKLRT
FHEASGFTGRSMAPGGSAPMRLSYYGGGHYDSLVRVGGRDGGEAGGGEVP
GMVENRALEMAQQRQAASTGRGAFGMEESKQRSDQEATEEAAVEAALKAS
REDFDSFTDLETALELSAEAHLQAELMRSAVASTEEELVKKVLEDSLKGS
DGEQGPSTEEEMVRVAMKESLAEGGLARDEGAAAEAATMVDHEYQEALTL
SMSGVGADAGRQGEAVDFGELVEDGELARAIALSLKHIQGQDQSLQEDNY
SVEEDHGASFLSMSPAPASSSPPVAADSFGSGASLEDAYLREQHENLEQA
RARKEEADLQRAVEASLGQQHCSDGRGPDN

mRNA from alignment at CM002468.1:418891..424031+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6395 ID=rna6395|Name=rna6395|organism=Nannochloropsis gaditana|type=mRNA|length=5141bp|location=Sequence derived from alignment at CM002468.1:418891..424031+ (Nannochloropsis gaditana)
TAGACCCACGTTTTAACATAACCTCTCGATCCGTTTCGCGAGTCTCCGCT
CCGCCGCTGCAACTTGAAGTTGCCTTTCCTAAATACATACCGCTGAGACG
CGCGACAATTTAGCTCTTCTTGTACGCAGAGGCCGAGCCTGCTGAGCCTA
ctgatatatatatatatatatataacTATATAGTCAGACGTCAGACGCAC
GTCAGTCCTGTCAATGTTTAAGTTTTCTTGCTTGATTCGCTTTTGCATTG
CGAGCCTTGAGACATCGGAACTATTTTACAAGAATAGATTGGCTTTATTT
GATGGTGGTCTCCGCAATTGTTTTTCAATGAGGGAAACGCTTGCGTTATG
GAACCGTCTTACTGGGGATATCTCGCATTTTGGATATCTCGCAAAGAAAT
AATGGCAATACTACTAGTACTCATGGGTAATTAAGGAAGACAGGAGGTTA
CATTCTGAATTTCTTTCGGGTGCGGGATCAAGGCCGCTGGCAGCTCTGCA
TAAGTGGTGTGGATCATTTTGCATGACGTGCCCGTAGCCAGGTGCAACAC
TCACACGAACACGACGAACCTTCTTCCAGGCGCATTTTCCGCCTCAACGA
ACACGAAAAATTATGTTGCACTTATAAGCTGGGTTGACAGAACAAAGTAC
AAGACATGTGGCATATCGAAAATTGATTTCGTACATTTCTCAAAAATACA
TGTTATCCCCGCTTTCTGATCTTGACTCCGCAAATCAACCTTTCATGGCA
CCCGTTCGAGCAAATGGCACTTTTTTGGCGTTTGACGCTTCTGTCAAGCC
TCCTCTTGATCCGGAAACATACGGCGTCTCGTCTCCGACAGTGGCAGCAT
GAACAAGCAAGTGACTCTACAAACACAGCGACCACGGGCACACTGACTTG
GAGAGCTAACACCACCAACTCCGTGCTTCCTGAAGAATGTAGTGCGGTCT
CGGAGGAATGTATGGATCAGCTTATCTCTGTGGCAGATGATGCACACAAT
GCAAACGTATCTGATGTGGGGAGTCTATACAATTTTTGTGGAACTGAATG
TGGTAAAAAGTAAGTTTGATTGGCACAAGATTTGAACGGTAGGTATTAAA
CAAAGCAGTTTAGACTGCTCAAATGCGTACTTTCATAGCTATACAGGCCA
TGTGACGGCGATTCTCCAGGGGAAATGCATGagtatcctccctcctcggt
ccaACGGGTCTCTCGATTCAAACATCGACGGAGTGGAGCGCACAAGGCCT
GCCGCGGTGGTCGTCATTAACGTCACTCGGCACTCAAATGATGACAGGAG
AATCCCTGTCAGTCCTGAGCACAGCAATGTATACGCTGAAATGCGGAGTT
GACCGATGAAAACGGAGATGACGGTGACAATGACAATGAAgatgacgacg
acgatgatgacCACCTGAGAGATGGGGACGCGAGGGTACATATTAGCAAT
GTTGTGTCAGTGAACGATTCCCTGGTGACATCGTCGGTACAAAAACGTGT
GGATTTATTTCGGAAAGATCGTTTTGGCACTGTTCTGGGTTGTGTAAAAG
CCGCTGACGGGGAGATGTGTTCGGCTAAACAAGGTTGTGACTTTTTCAAT
TCATGCTGCTACTCTTCTTGGTCTCGACTGGGCGACTTTGCCGGCTACCC
GTTGACATGTCGTAGCGTTCGAGCAATAGAGTATATGTGTCCTGGGATCA
TACGGTTTTTAGGAACTGATGGGTGCACGTAGTTTTGTATCACAGGCGCT
ATGTTGACTTAAATTAGTGCTTGAGGATATACCACCATCATCCCTTCGCG
TAAAGACCCCGGACGGGAACCTTTCAATACGTTTTAAAACTCGAAAGAAA
AGCAGAGAGATGCGAAGAAAGATACAAAATACTGGAAAGCATAACATTAA
TTTGTTAGAGTCACTACCCAACCACGTTCGGGCACGTAAGAAAAATCAGC
GAGGAGAGCGCCGGACACCAGCTAATAGCCTGTAGGCAACAGCTCCCACA
AATTAAAAGAAGTATACCTTCACTCAAAGCTTATATACGTCGGGAGCGGT
GTGCGTATCTACCCTTaaacatttttttaaagGGATCAGCTTTTGATTAA
GGGCAGCGAAGGTTGCGCTGTTGCAGTCTCTCGTCTCGTCGTTGAGATCA
TGTCTTTTCCCTTACTTGCCGCACAAGTAGTATGAATGGTCCTCTCACCC
GCTTTTCGTTTCCGGATGCAATCCCCGTTGTGGTACCATGCAAGGTTTCC
TGGGACTTTAGAGGACAACGCCGTCATCGGATTTTCTCCCGGATCCTCAA
AGTGGCGTTCATAAAGCGGTTCGCCGTATCAGGGGCTGTGAGGACTGTCA
TCACGAGCACCCACGTtggcagcgggaggaggcgcccccccaaggaggag
gaggaacagaaagGAGCGGAACGCAGCGTACGTCCACGACGCGGAGACAA
CTCAACATCTGTGAGAAGCGCATCACATCGACCTGGAGCCATGACACAAA
GTTTTGATCCCGAGACTGAAGCACAGCGGCAGGAAGATCAGCATTTGCGA
GGTATGCGACACGCCCATCACCCGCAGGGGAGATCACGCATGGACGAAGG
AGTGGAAGCCCGTAATACCGCCTTTACTAGATCACGGCTAGGTGATGAGC
ATGGTGGCCGACATGACAACGCGGAGGATGTGGGGGCTTTCGGAGAGGAG
CTTGATCCGATGCTGGACTCAATCACCGACACGCGAGCGTCAGGCGTTGC
GCACACTGCAAGGAATCTAGATGGCTACAGTGCGGCGACCAGCATCACAA
ACCGCGTGAGCGAAGTCTCAGACCTTCACAGCCGGCGTCCATCGTCCCTG
CGGACGTCCATACAGCCTTCCTGTCCCACGCCCGGCCTCAACGAAAATGA
CAACGAAAGCATGGGAAAAAACGCGAATGACGCGGCTGGCTCAGAGGCGC
TGGGCCCTTCTGTCAGTCTTTCTCCCTGTCGCACAAGCTGGCCCGTGTCT
GGGGACGGCGCAACGCCTTATTTCGAGGGCATGCTGCTCGAGGCTCTAGA
CAGTGTCGACGTCTGGTGCGAGGCGGAAGTCATCGGGGTCAACACCGCCT
CCCGCCACGTGCGCGTGACGTATCTATATTGGAGCGATAAGTACGACGAG
gacatccctctcttctccaccCGGCTGGCTCCGTATCCCACCCACACCTT
TCAACCCGGGCGGCCCGAGACCTTGCAGGTGCGACAGCGCGTCGAAGTCG
AAGTCGAGGGCGCGGACCAGGCGAGAAAATGGGTACATGCTGAGGTGAAA
GGTGTGTCTGGGGATGGCAGGCAAGTCCTCGTGGCCTGTAAAGGTCGGGG
CCGGCTCGAGGAGTGGCTGCCCCGAGACAGTGCCCGTATCCGGGCCTACG
GGAGGTTCAAGAAGTGCCTGGCCGCTAAGCAGAGCCGGTACGGGAAAGCC
GCCCTTGCCGCTACCACAGGGAGTCATGTTGTCAACGGCGAGGTCCACGC
CGGGTTGAAGCGCCCCCCTCTAAGACTTGTCGGGGGGTCGAACCAGCATT
ACCCGCAGCCGCCTCAGTCGCGGAGCCAAACGCGGGTGGATCTGAATGAT
CTGCACCGTcgcgccatcgccgccagcAGTGACAGGTACAGCGCCTATCA
AGCCGCTCTAAGCCGACACGGACTCTCGATTCAGCCCATCGAGGGGGATG
GAAACTGCCTCTTTCGGTCGGTCTCGCACCAGGTATACGGCACGGACGCA
CACCACATGTTGATCCGCGACAAGTGCATGGCCTACATGGATCTGGAGCG
CCAGTATTTCGAGCCGTACGTAGTGGGAGGAATGAGTGAGTTCTTGCGGT
ACCTGGAACTGAAGCGTCGCGACGGAGTTTGGGGGGACGACCCGGAGGTG
CAGGCCCTCTGTGAGATGTACGATCGGCCTGCAGAGATCTGGGCCTTCGA
CGCCGCGGAGGGTGCGAAGAAGCTCAGGACTTTCCACGAGGCGAGCGGGT
TCACCGGGCGCTCGATGGCGCCGGGCGGCAGTGCACCGATGCGGTTGAGC
TATTACGGGGGAGGACACTACGACTCGTTGGTGCGGGTAGGGGGTCGGGA
TGGCGgtgaggcggggggaggagaggttcCAGGAATGGTTGAAAATCGGG
CGCTTGAGATGGCACAACAGCGACAGGCAGCTTCTACAGGTAGGGGGGCG
TTTGGAATGGAGGAGTCGAAGCAGAGGTCCGACcaggaagcgacggagga
agctgcCGTTGAAGCCGCCTTGAAGGCGTCGAGGGAGGACTTCGATTCCT
TCACGGACCTGGAAACCGCACTGGAGTTATCGGCAGAGGCGCATTTACAA
GCGGAACTGATGCGGTCGGCCGTGGCATCAACAGAGGAGGAATTGGTGAA
AAAAGTATTGGAGGACAGTTTGAAGGGATCAGACGGGGAGCAGGGACCAA
gcacggaagaggagatggtgcGAGTCGCGATGAAGGAATCACTggccgag
ggagggttggCAAGGGACGAGGGCGCGGCAGCAGAAGCGGCGACAATGGT
AGATCACGAGTACCAGGAGGCTTTGACCCTAAGCATGTctggggtggggg
cggatGCCGGGCGACAGGGCGAGGCCGTGGATTTTGGTGAGCTGGTAGAG
GACGGGGAGCTGGCCCGAGCAATTGCTCTCTCATTGAAGCACATACAGGG
CCAAGATCAATCTCTTCAGGAGGATAATTATAGTGTTGAAGAAGACCACG
GCGCCTCATTTTTGTCGATGTCGCCTGCTCCCGCCAGTTCGTCACCGCCC
GTAGCTGCTGATTCTTTCGGGAGTGGCGCCAGCCTGGAAGATGCATACCT
TCGAGAGCAACACGAAAATCTTGAACAAGCTCGCGCGCGAAAAGAAGAGG
CTGACCTTCAACGGGCTGTGGAAGCTTCCTTAGGACAACAACATTGTAGT
GATGGAAGGGGACCTGATAATTGAGCTCGAAAGAAGACCACCCCCTAGTA
ATGATATTGACAATTTATGATCACTATCTGAGGACGACAAATGTACATAC
TATGAGTAGAATGTGTACGAAGTATGTAAAAAGGGACCAAAAAGAAGTAT
TTTCCAAGAGCATATCACAATTGGCCGTTCGACTATTTTTT

Coding sequence (CDS) from alignment at CM002468.1:418891..424031+

>rna6395 ID=rna6395|Name=rna6395|organism=Nannochloropsis gaditana|type=CDS|length=2793bp|location=Sequence derived from alignment at CM002468.1:418891..424031+ (Nannochloropsis gaditana)
ATGAATGGTCCTCTCACCCGCTTTTCGTTTCCGGATGCAATCCCCGTTGT
GGTACCATGCAAGGTTTCCTGGGACTTTAGAGGACAACGCCGTCATCGGA
TTTTCTCCCGGATCCTCAAAGTGGCGTTCATAAAGCGGTTCGCCGTATCA
GGGGCTGTGAGGACTGTCATCACGAGCACCCACGTtggcagcgggaggag
gcgcccccccaaggaggaggaggaacagaaagGAGCGGAACGCAGCGTAC
GTCCACGACGCGGAGACAACTCAACATCTGTGAGAAGCGCATCACATCGA
CCTGGAGCCATGACACAAAGTTTTGATCCCGAGACTGAAGCACAGCGGCA
GGAAGATCAGCATTTGCGAGGTATGCGACACGCCCATCACCCGCAGGGGA
GATCACGCATGGACGAAGGAGTGGAAGCCCGTAATACCGCCTTTACTAGA
TCACGGCTAGGTGATGAGCATGGTGGCCGACATGACAACGCGGAGGATGT
GGGGGCTTTCGGAGAGGAGCTTGATCCGATGCTGGACTCAATCACCGACA
CGCGAGCGTCAGGCGTTGCGCACACTGCAAGGAATCTAGATGGCTACAGT
GCGGCGACCAGCATCACAAACCGCGTGAGCGAAGTCTCAGACCTTCACAG
CCGGCGTCCATCGTCCCTGCGGACGTCCATACAGCCTTCCTGTCCCACGC
CCGGCCTCAACGAAAATGACAACGAAAGCATGGGAAAAAACGCGAATGAC
GCGGCTGGCTCAGAGGCGCTGGGCCCTTCTGTCAGTCTTTCTCCCTGTCG
CACAAGCTGGCCCGTGTCTGGGGACGGCGCAACGCCTTATTTCGAGGGCA
TGCTGCTCGAGGCTCTAGACAGTGTCGACGTCTGGTGCGAGGCGGAAGTC
ATCGGGGTCAACACCGCCTCCCGCCACGTGCGCGTGACGTATCTATATTG
GAGCGATAAGTACGACGAGgacatccctctcttctccaccCGGCTGGCTC
CGTATCCCACCCACACCTTTCAACCCGGGCGGCCCGAGACCTTGCAGGTG
CGACAGCGCGTCGAAGTCGAAGTCGAGGGCGCGGACCAGGCGAGAAAATG
GGTACATGCTGAGGTGAAAGGTGTGTCTGGGGATGGCAGGCAAGTCCTCG
TGGCCTGTAAAGGTCGGGGCCGGCTCGAGGAGTGGCTGCCCCGAGACAGT
GCCCGTATCCGGGCCTACGGGAGGTTCAAGAAGTGCCTGGCCGCTAAGCA
GAGCCGGTACGGGAAAGCCGCCCTTGCCGCTACCACAGGGAGTCATGTTG
TCAACGGCGAGGTCCACGCCGGGTTGAAGCGCCCCCCTCTAAGACTTGTC
GGGGGGTCGAACCAGCATTACCCGCAGCCGCCTCAGTCGCGGAGCCAAAC
GCGGGTGGATCTGAATGATCTGCACCGTcgcgccatcgccgccagcAGTG
ACAGGTACAGCGCCTATCAAGCCGCTCTAAGCCGACACGGACTCTCGATT
CAGCCCATCGAGGGGGATGGAAACTGCCTCTTTCGGTCGGTCTCGCACCA
GGTATACGGCACGGACGCACACCACATGTTGATCCGCGACAAGTGCATGG
CCTACATGGATCTGGAGCGCCAGTATTTCGAGCCGTACGTAGTGGGAGGA
ATGAGTGAGTTCTTGCGGTACCTGGAACTGAAGCGTCGCGACGGAGTTTG
GGGGGACGACCCGGAGGTGCAGGCCCTCTGTGAGATGTACGATCGGCCTG
CAGAGATCTGGGCCTTCGACGCCGCGGAGGGTGCGAAGAAGCTCAGGACT
TTCCACGAGGCGAGCGGGTTCACCGGGCGCTCGATGGCGCCGGGCGGCAG
TGCACCGATGCGGTTGAGCTATTACGGGGGAGGACACTACGACTCGTTGG
TGCGGGTAGGGGGTCGGGATGGCGgtgaggcggggggaggagaggttcCA
GGAATGGTTGAAAATCGGGCGCTTGAGATGGCACAACAGCGACAGGCAGC
TTCTACAGGTAGGGGGGCGTTTGGAATGGAGGAGTCGAAGCAGAGGTCCG
ACcaggaagcgacggaggaagctgcCGTTGAAGCCGCCTTGAAGGCGTCG
AGGGAGGACTTCGATTCCTTCACGGACCTGGAAACCGCACTGGAGTTATC
GGCAGAGGCGCATTTACAAGCGGAACTGATGCGGTCGGCCGTGGCATCAA
CAGAGGAGGAATTGGTGAAAAAAGTATTGGAGGACAGTTTGAAGGGATCA
GACGGGGAGCAGGGACCAAgcacggaagaggagatggtgcGAGTCGCGAT
GAAGGAATCACTggccgagggagggttggCAAGGGACGAGGGCGCGGCAG
CAGAAGCGGCGACAATGGTAGATCACGAGTACCAGGAGGCTTTGACCCTA
AGCATGTctggggtgggggcggatGCCGGGCGACAGGGCGAGGCCGTGGA
TTTTGGTGAGCTGGTAGAGGACGGGGAGCTGGCCCGAGCAATTGCTCTCT
CATTGAAGCACATACAGGGCCAAGATCAATCTCTTCAGGAGGATAATTAT
AGTGTTGAAGAAGACCACGGCGCCTCATTTTTGTCGATGTCGCCTGCTCC
CGCCAGTTCGTCACCGCCCGTAGCTGCTGATTCTTTCGGGAGTGGCGCCA
GCCTGGAAGATGCATACCTTCGAGAGCAACACGAAAATCTTGAACAAGCT
CGCGCGCGAAAAGAAGAGGCTGACCTTCAACGGGCTGTGGAAGCTTCCTT
AGGACAACAACATTGTAGTGATGGAAGGGGACCTGATAATTGA

Synonyms

Publications