rna6386, rna6386 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6386
Unique Name	rna6386
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2456
Alignment location	CM002468.1:401292..402517 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100047g29.6073.mrna
Orig protein id	gnl\|cribi\|Naga_100047g29.6073
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:401292..402517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g29	gene6170	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6386	rna6386-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24310.1	cds6371	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:401292..402517+
coding sequence from alignment at CM002468.1:401292..402517+

mRNA sequence

>rna6386 ID=rna6386|Name=rna6386|organism=Nannochloropsis gaditana|type=mRNA|length=2456bp
CGAAGCATTTTCATCACTTTCTTTCAACGCCCGTTGCGGGTCGAATAAGC
GTCGTCTCACCTGCTGGGAGCACAAGAAAGACGCCACCTAGATCCACTAT
TTGTGGCGATTATCATTTAATTTCCATCACTACCGTTCTCTACCTATTAA
ACCAGGCACAATACCTGACGATATCGATGAGGGCTGTGTCCCTTGAAGGT
GTATCGAAGCGGAAGCGCTCGGTGACATCTTTCTCTCAACCTTGCCCCCC
CAAACTTCGACGCAGTCGACGGGGCAGACACGACAACGGCCCGTCTGCGT
GTGAGACACCCAATGCTGTTTCAGAAACAGGTTTTCAGGGCAACAAAACG
CGGGCTAGCATTAAGGACTCAGCGGCCCGTCCAGCAGGTTGTCGTGCTCC
TCAGGTCGATACAACTTCACCCAGACCTCTGACGCCCACAGCCCTTCTCA
CGTCAATGGAGCGCAGAAGCATTGGGATATCAGGCTTGCTCCGTGCTTCC
TTCTCCGGAAACGCAGCTGAGTTTGAAGCGGAAGCTCATCGACTGTGTGC
CCTCATCCCAGCAAAACTATTGTCGTCCTTTACATCCCTGTCTTCTGCTG
CTGCCTTCTCCTCGGAATGGACCCGCGCTGATGCTAGAGGGCGCTCCATC
CTGCACGGTGCTGCTTCCTCGGGCCATCCCACCATTTTACAACACGTGTT
AGACGCTAAAGTGTTTGACATTGATCAGCCAGCCGAGGGCGGCCTGACTG
CATTGTGCTATGCTTTAGATCGCCGAGACTTCGTGGGCGCCACTACCCTG
CTGGCCGCGGGGGCGAATGCGGACAAGGTGGAGTCACTGTATGGCTTTTG
GGATGCTGCATGGGCTACGGAAAGGATGGGCATGTTTGGTACACCTCGGG
CTGATGCGTTGGATATCTTGAGGACCGCTCTGTCTCAAGCACTGGTGCAG
AACGATGACAGGTGCCGGCCATGGCTGGACTTGACCACACAACACGGGCT
CTTCGAAGAGTGGAAGGCATCGCTAAAGGTCGGGAGCAGGGTGGACGCCC
GTGACTGCGACTATCGATGGTATGAAGCCGAGGTGGTCGGGACGTTCGAG
AGGGGGGTACGGGTTAGCTATTTGAGCTGGGGCCGCCGCTTTGACGAGGA
CCTGTCCTTAGACTCATTGCGCGTGCTGCCCGCCTACTCAGTAGTGCCCG
CATGGCGCGAGACGTTGTCAGTGGGCAGTCATGTGGAGATCCTGGCCACG
GCGGCCGGGCCCATGGCGGCAGGCTCGACGAGCGCGGCTGCAACGCTGCC
GTCTCCAGAAGACCCGCAGGAGCGGAAGTGGTGGGATGCAACGGCCGTCG
ACATTCAAAGGAGCCGACGGCGCATATTGCTGAGTGTGGATGGAAGACCG
AGCGTTACCCGCTGGGTTGACATGGATGGCCGTGAGATTGCCGACATTGG
CACGCACGTGAAGCCTGCCCCTCCGCCCCTGCTGCCTCCACAGACCCTGG
CCGGATCCCTCCTCGAGGTCCAGGATGACGCGACTGGCGATGTTGGGGCT
AGCAGCGCTGCGAGTATTTCTCACAGTCGAGGTGGCAAGGAGCCTGTCGC
CGCGAGCCCTCGACAGGAAGAGGCATCCAAGGCTGCCAACGACGGGGACT
TGGCGAGGCTCCTGGCTCTCATCAATGTGCAAGACCCGGTGGCCCTGCGT
TTTATCTACTTCAGGCGCAAGCTTCAACTCGGCATGATATCCCGTCTCAA
TCCCCCCGCCCTTGGACCAGGCTCTCTTCTGCACAACGGTCGGCGGCGGA
GGGGTAAATTAGGGCTCATTTTTCACCAACAGGTAGAGAAGCATCACGAT
AAACGCCCTAAGAAGCGGCACGTCGAGACAGCAAGTTTGGAATTTCCTAG
CTGCAAGAAGAGGAGGACGAGCAAATTGCTGTATGCCGAATTACGCAAGA
ACGTCTTGCGGTATGTGGTGACGGATTTGAAGGAAGATCTCTTCAAAGAA
TTCCTACAGGAGTATTTGTGACACAGGTGACAGGGATGAACAGCGAAAGC
TTAGCAAAGATTGAAGAGAAAACCCTGGGACATAGTTGGTCAAGTAAATC
CATAGTGTTGAAATGCAATGTAAAGCATGGAAGGATTGTAAGTATTCCTG
ACTTCTTTTTCCTCTTCAATGTATGGAAACATACTGCTGGTTGAAAATGC
AGTCATGAAAAGTGTCAAAAGCAATCGTCAGGCATTGACTCGGCCATACC
AGTACGAAAGTCGTTGAGTAAGATCGATCCCAAAAGGCGTGTCGCCTTTT
GCCGGAATGACCGATTCCAGCATTCTGACCTTTGTAGACTCATGAAACAC
TTTGTTTTGGAGAGACAAGCAATATGAAAGGGATCCAAAGATAAAACAAT
AGCTATGATGATATTGTAAGTTATGACTACCTCTTAACCATGTTTGAGTG
ACAAAA

protein sequence of rna6386

>rna6386-protein ID=rna6386-protein|Name=rna6386|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MPDLPPSTHAFATPLSCFDDSFSLHNFSHYVIARTPDSFSGFAPTSAMSP
TSFSSPSSLSSASSLVALPCTMCLLRVITALFILCLLPSQCGAWSSSFLP
GVRSRTTSWRASDISRTLCMKIQWDPYTGQFIDLGDDAGEIGVPSRTPSS
SASSGPGEEPNKATGLKAEDLKGVGGSVGKVNAYIAQKLMESPIEESPVK
VDALLQDLEDLGLAEGEEATWPEITESMQSVLRNEQAAALETVRRNVDLT
RATTILIHSKDSGLAPVLRDALKARGGASRSVTVGERGGGF

mRNA from alignment at CM002468.1:401292..402517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6386 ID=rna6386|Name=rna6386|organism=Nannochloropsis gaditana|type=mRNA|length=1226bp|location=Sequence derived from alignment at CM002468.1:401292..402517+ (Nannochloropsis gaditana)
ATGCcagacctccctccttccactcaCGCCTTTGCCACACCATTGTCATG
CTTTGACGATTCATTCTCTCTACACAACTTCTCGCACTACGTGATTGCAA
GGACACCTGACTCATTTTCGGGTTTTGCCCCGACAAGTGCGATGTCACca
acctccttctcgtctccCTCATCGTTGTCCTCAGCTTCCTCACTGGTGGC
CTTACCATGCACAATGTGCCTCCTCAGAGTGATCACTGCTCTTTTCATTC
TCTGTCTTCTTCCGAGCCAATGCGGTGCCTGGTCCTCTTCGTTTTTACCC
GGTGTTCGGGTAAGACTTCTCTCAGGATGTGTTGGAGCTTTTGCTAGGAG
ACCAGTATTCCCGACAACGTCTCCCAACTCCCACAGCGTCCGCCACACTT
CGTTAATGAATCTTCCTGTTTACTTTGTGCTATGTCATGAATGGTTGCTA
ATAATTCGTATTCTACACTCGACTGCTTCTCTCGTCAGAGCCGCACCACC
TCGTGGCGAGCTTCGGACATCTCTCGCACACTGTGTATGAAAATTCAATG
GGACCCATACACAGGCCAATTTATCGACCTAGGAGATGATGCGGGAGAGA
TCGGTGTCCCATCCCGtaccccgtcttcctccgcatccagtggcccggga
gaggagccgAACAAAGCGACGGgcctgaaggcggaggacctgaagggagt
gggaggcagTGTCGGGAAAGTTAACGCCTACATCGCACAGAAATTGATGG
AATCCCCTATAGAGGAAAGTCCAGTAAAAGTGGATGCCCTACTACAGGTg
cgaaggaggtggccgGTTTGCATGCGGGGGCGTGCGGGCTGTCTTGAAGC
CCTTTCTCAAGCTCACCGTCCTCTCTTGTGCCCCTCGTCGGCTCGAAAAG
ATGGACCATGCCCATGGTTTTAGAGTGATCAGCTCATCATGCAGCTTCCC
CTTCTGATCAACCCCCAGGACCTAGAAGACCTAGGGttggccgaggggga
ggaggcgacctgGCCCGAGATCACTGAGAGCATGCAGTCTGTCCTCCGCA
ACGAGCAGGCAGCAGCCTTGGAGACGGTCAGGCGGAACGTGGATTTAACT
CGAGCTACGACGATTCTGATCCACTCTAAAGACAGTGGGTTGGCGCCCGT
CTTGCGGGATGCATTGAAGGCGCGGGGGGGAGCATCCAGGAGTGtgacgg
tgggggagagggggggggggttctAG

Coding sequence (CDS) from alignment at CM002468.1:401292..402517+

>rna6386 ID=rna6386|Name=rna6386|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002468.1:401292..402517+ (Nannochloropsis gaditana)
ATGCcagacctccctccttccactcaCGCCTTTGCCACACCATTGTCATG
CTTTGACGATTCATTCTCTCTACACAACTTCTCGCACTACGTGATTGCAA
GGACACCTGACTCATTTTCGGGTTTTGCCCCGACAAGTGCGATGTCACca
acctccttctcgtctccCTCATCGTTGTCCTCAGCTTCCTCACTGGTGGC
CTTACCATGCACAATGTGCCTCCTCAGAGTGATCACTGCTCTTTTCATTC
TCTGTCTTCTTCCGAGCCAATGCGGTGCCTGGTCCTCTTCGTTTTTACCC
GGTGTTCGGAGCCGCACCACCTCGTGGCGAGCTTCGGACATCTCTCGCAC
ACTGTGTATGAAAATTCAATGGGACCCATACACAGGCCAATTTATCGACC
TAGGAGATGATGCGGGAGAGATCGGTGTCCCATCCCGtaccccgtcttcc
tccgcatccagtggcccgggagaggagccgAACAAAGCGACGGgcctgaa
ggcggaggacctgaagggagtgggaggcagTGTCGGGAAAGTTAACGCCT
ACATCGCACAGAAATTGATGGAATCCCCTATAGAGGAAAGTCCAGTAAAA
GTGGATGCCCTACTACAGGACCTAGAAGACCTAGGGttggccgaggggga
ggaggcgacctgGCCCGAGATCACTGAGAGCATGCAGTCTGTCCTCCGCA
ACGAGCAGGCAGCAGCCTTGGAGACGGTCAGGCGGAACGTGGATTTAACT
CGAGCTACGACGATTCTGATCCACTCTAAAGACAGTGGGTTGGCGCCCGT
CTTGCGGGATGCATTGAAGGCGCGGGGGGGAGCATCCAGGAGTGtgacgg
tgggggagagggggggggggttctAGATGCcagacctccctccttccact
caCGCCTTTGCCACACCATTGTCATGCTTTGACGATTCATTCTCTCTACA
CAACTTCTCGCACTACGTGATTGCAAGGACACCTGACTCATTTTCGGGTT
TTGCCCCGACAAGTGCGATGTCACcaacctccttctcgtctccCTCATCG
TTGTCCTCAGCTTCCTCACTGGTGGCCTTACCATGCACAATGTGCCTCCT
CAGAGTGATCACTGCTCTTTTCATTCTCTGTCTTCTTCCGAGCCAATGCG
GTGCCTGGTCCTCTTCGTTTTTACCCGGTGTTCGGAGCCGCACCACCTCG
TGGCGAGCTTCGGACATCTCTCGCACACTGTGTATGAAAATTCAATGGGA
CCCATACACAGGCCAATTTATCGACCTAGGAGATGATGCGGGAGAGATCG
GTGTCCCATCCCGtaccccgtcttcctccgcatccagtggcccgggagag
gagccgAACAAAGCGACGGgcctgaaggcggaggacctgaagggagtggg
aggcagTGTCGGGAAAGTTAACGCCTACATCGCACAGAAATTGATGGAAT
CCCCTATAGAGGAAAGTCCAGTAAAAGTGGATGCCCTACTACAGGACCTA
GAAGACCTAGGGttggccgagggggaggaggcgacctgGCCCGAGATCAC
TGAGAGCATGCAGTCTGTCCTCCGCAACGAGCAGGCAGCAGCCTTGGAGA
CGGTCAGGCGGAACGTGGATTTAACTCGAGCTACGACGATTCTGATCCAC
TCTAAAGACAGTGGGTTGGCGCCCGTCTTGCGGGATGCATTGAAGGCGCG
GGGGGGAGCATCCAGGAGTGtgacggtgggggagagggggggggggttct
AGATGCcagacctccctccttccactcaCGCCTTTGCCACACCATTGTCA
TGCTTTGACGATTCATTCTCTCTACACAACTTCTCGCACTACGTGATTGC
AAGGACACCTGACTCATTTTCGGGTTTTGCCCCGACAAGTGCGATGTCAC
caacctccttctcgtctccCTCATCGTTGTCCTCAGCTTCCTCACTGGTG
GCCTTACCATGCACAATGTGCCTCCTCAGAGTGATCACTGCTCTTTTCAT
TCTCTGTCTTCTTCCGAGCCAATGCGGTGCCTGGTCCTCTTCGTTTTTAC
CCGGTGTTCGGAGCCGCACCACCTCGTGGCGAGCTTCGGACATCTCTCGC
ACACTGTGTATGAAAATTCAATGGGACCCATACACAGGCCAATTTATCGA
CCTAGGAGATGATGCGGGAGAGATCGGTGTCCCATCCCGtaccccgtctt
cctccgcatccagtggcccgggagaggagccgAACAAAGCGACGGgcctg
aaggcggaggacctgaagggagtgggaggcagTGTCGGGAAAGTTAACGC
CTACATCGCACAGAAATTGATGGAATCCCCTATAGAGGAAAGTCCAGTAA
AAGTGGATGCCCTACTACAGGACCTAGAAGACCTAGGGttggccgagggg
gaggaggcgacctgGCCCGAGATCACTGAGAGCATGCAGTCTGTCCTCCG
CAACGAGCAGGCAGCAGCCTTGGAGACGGTCAGGCGGAACGTGGATTTAA
CTCGAGCTACGACGATTCTGATCCACTCTAAAGACAGTGGGTTGGCGCCC
GTCTTGCGGGATGCATTGAAGGCGCGGGGGGGAGCATCCAGGAGTGtgac
ggtgggggagagggggggggggttctAG

Synonyms

Publications