rna6383, rna6383 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6383
Unique Name	rna6383
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2099
Alignment location	CM002468.1:393088..395950 +

Link to JBrowse

Properties


Property Name	Value
Product	cullin protein 3
Orig transcript id	gnl\|cribi\|Naga_100047g26.6068.mrna
Orig protein id	gnl\|cribi\|Naga_100047g26.6068
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:393088..395950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g26	gene6167	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6383	rna6383-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24305.1	cds6368	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:393088..395950+
coding sequence from alignment at CM002468.1:393088..395950+

mRNA sequence

>rna6383 ID=rna6383|Name=rna6383|organism=Nannochloropsis gaditana|type=mRNA|length=2099bp
AAAAGCTGGGAGGGCTTTGCATGCGCACGGGCACGAGACCGAGTACTTGT
GTCGGTTTGGCCTTTTCAATAATGCTAAAGCATGAAGGATCCTCATTAAA
GGGAGGTCAGACCGCTATTTCCATCCCACAAATGCAATCAAACTTGGACA
TTATCCCGGGAGACTCGAGTCTCGTTTGGAACCCTCCACATTCAACCAGG
CAAATGCGCTTTCTTACAACGAAGACCACAAGTTTGACTAATTTTTTAAG
CTTTATTTTTGTGATGATGTCAACATTCCCATGTTTAGTTGGCTAAAATT
AGAGCGCGATGAAACTTCCAGGGGAAGACGACGGAGATTCCGACTGCACC
AGGTCACATCAATCAAGGACCTCTCTGAGCTTTTTGCCATAGCCATATCA
CTACTCATTGTGCGCGATATTTTAGAGTTTCTTCAAAACTTTATGCGGCT
CTTTTGCGGCGTTGTATCGGACAACTTGAGAAACAGTGCACGTTTAGGGT
CCATGTGCCTCTCTCCCCAGACTTGTCCCCACCCTGAGTCCTCACGCACA
GTGTCGAAACCCGCCACAGGATCATGTGATGTACATTGGAAGCATAATTG
TGCAACCTGAGAGCCCATATCGAGCCTTTAACGTCAATCTTTCACATCGC
TCCCCCCCTCTCCCTTTTTTCTTGCCCCCATAGTGTCCCGTCGCGTGTGT
TCCTCGGAAATGAGCGGCAAAGACGCCGTTGGCGTCACTAAGAGCGGCAA
TCCGAGCGCAGGCACTTCGGCCCACGCCATTTCTGATAATTCTTCGCCCA
TTGTCAGCACTCGGCGAACGGGCATCATCCGCATCCCGGACGAGGGGGAG
GGCGAGAGCTCGGATGCTCCCTTCTTACCTGTATCCTCCTTCCTCATCCC
GCCGCAATACCAGGACGCCGTATCGCACGTTCTCATTCCCCATGGACTGA
TACAAGATCGAGTTCATAAGCTTGCCTTCGACATCAATCAGGAATACGCC
GACAAGACCTTGCACCTCCTCTGTGTCCTCAAGGGCGGCTCCTCCTTTTT
CTGGGAGCTTCAAACCGCCTTGATCAATCTCTCGTCGCATCGGCGGACAA
ACACGGCAAAGTTTCAATTCTCGTTCGACTTTGTGCGGGTGAAGTCGTAC
GAGGGCACTGAAAGCACTGGCAAGGTGCAAATCACGGGCACGGACATGAA
AAACTTGAGGGGCAGACACTTGTTGCTCGTGGAGGACTTGATTGACTCGG
GGCTGACCATGTCGCAGCTGGTGCCGTACATTGAAAAAAATGCGGCCCCG
GCCAGTGTTCGGGTGGCGGCCCTGATGGAGAAGAGGACGCACCGGTCGTG
CGGGTTCAAGGCGGACTACGTGGCCTTCGACATCCCGGACCTCTTCGTGG
TGGGCTACTCCCTGGACTACAACGAAGCCTTTCGAGACATGCTGCACATC
TGCGTGATCAACGAGCTCGGCATCGAGAAGTTCAAGACCAACGCCTGAGT
GAATGAATCGGACCTAGTGGAGCCTACAGAGATGGAGGAAGAAACAGCAG
GACACGAACGGTATAGCGCGGCCGAAAGCGTTGAATATGCAAGCGAAAGC
CGTATTGGAGAGATAGTGATTGAGAAGTCAGGAAGGAGATAGGTCGTGAA
GACAGAGCTCCCGAGTGCTTCGTGGGGGGGTCATGCAACGCTGAGAAAAG
GACTTTACTGTATGTAACTCATAGAGGGGCAACCCGCGATACATGCATCA
GGGACATGAGGGTTAACGAAAAGTACATAAATGGGGTGATATATATATAT
CAAAAACTGGCTCTATTTTTGCTGCAAGAGGTGATATAGGGAATACAATC
GAGCATTGAGACAAATATACATATGTTTCGTTGTCGTCGTGTTTCCCTTG
AGACCGATGAATTTTCAAGAGCATAGTCTGTATGTATGCTATGTCAATAT
TATATGAGATCGCCCAGAAGAAAGAGGGTCGGCTATATGGAGGGCTTTGC
GTGCGGCTTTGAGTACTCCTCCGGAGTCTACTGATGTTTCGCACTACCGC
GCAGAAGTATTCTCGAGGATTTTTATAAAAGAAAAAGTGTACACACACA

protein sequence of rna6383

>rna6383-protein ID=rna6383-protein|Name=rna6383|organism=Nannochloropsis gaditana|type=polypeptide|length=751bp
MATNKKFVIKPYKQHAQMDRQRATTVWGELSGAIDEIFRKNASNLSFEHL
YRNAYNLVLHKHAEILYQGVQNSVQTYLNTVSTFVANASDERLLEEINLR
WGEHQVTMSMVRDILMYMDRTYVPQHNKTKVYDLGLRIFRDAIARHPQVK
DRLRSLLLGSIRAEREGQLVDRSLLRSTLSMLMELGIEGTAVYEEDFERE
FLRTTRAFYRAESLDVISKNTCPVYMRKAEQRLLEEQERVAQYLDRSTDP
KLRAILEEELVKAHASSLIEMEGSGCRAMFRDAKTEDLERMYLLFARVPS
TLEELRGAMAEYVKSAGRELVADQERVREPVVFVKGLLDMRDKFDRIVSD
AFQGEKAAQKKLQEAFEDFINMDTRCAHYLALYVDDLLKVGLKGMTEEEA
DGALSKFIVIFKFLQDKDVFENYYKQHLSKRLLGGRSVNDEFEKQMIVKL
KTECGYHFTSKLEGMFNDMRLSKDAMEEFRKAGVSRVGGVELEVNMLTMG
YWPSQALTTCNLPPEIKACCQVFQNFYLNKHSGRKVTWQAGMGSADIRAT
FGNGRKHELNVHTYSMCILMLFNAADTLTLEDIQKATQIPENELRRNLIS
LCTNKHRILRKASKGKGVTDNDRFTFNANFTSKLRRIKVPLVSMKEAVVD
GRAGEGEGGGGGLGPGGERLVNGIPAAVEEDRRHLVEAAIVRIMKARRKL
GHNELIAEVTRQLSMRFPASPPFIKNRIESLIERDYLERGANDRKTYAYL
A

mRNA from alignment at CM002468.1:393088..395950+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6383 ID=rna6383|Name=rna6383|organism=Nannochloropsis gaditana|type=mRNA|length=2863bp|location=Sequence derived from alignment at CM002468.1:393088..395950+ (Nannochloropsis gaditana)
TTTGAATGCATTGGCGTCGTCAAGACTTCATTTCAAATGTTAGTTGTGGA
GTTATTGCCTCTTCAaatgagaggaggatgggtaATCTTGCATTCTGGTA
GATCCTGTTACATGGCCAGCAGACGAGAAAACAGTGCTCCCCAGGAGTAT
ATGCTCACTGGTAAATTTTTCGGTTTGTTTCTCTTTCAATCGACACAATC
AGTGCACCTTCTATTGATACTTGGCGTTTGTCAGTCACCTCCTGGGCCTC
ACTTCCCGAACCACCCGCCAGCATTACTTGATTGGCGGTCTGAAGACCTT
TGATTGACTAGACCCTGCGCTCGATTGGTATCCCTGTACAAATAAGTATG
GCCACAAACAAAAAGTTTGTCATTAAGCCATACAAGCAGCATGCACAGAT
GGATCGGCAGCGGGCGACCACAGTGTGGGGAGAGCTGAGCGGGGCCATTG
ACGAGATCTTCCGAAAGAACGCCAGCAACCTGAGCTTTGAACATCTTTAC
AGGAATGCCTACAACCTCGTCTTACACAAACACGCCGAAATCCTGTATCA
AGGAGTGCAAAATTCGGTGCAAACCTACTTAAATACAGTGAGCACATTCG
TCGCTAATGCGTCTGACGAGCGtctgctggaggagatcaaTTTGAGGTGG
GGCGAGCACCAGGTAACCATGAGCATGGTTCGAGATATACTTATGTACAT
GGACAGGACGTACGTACCACAGCACAACAAAACCAAGGTGTACGACTTGG
GTTTGCGAATTTTCCGGGACGCGATCGCCCGGCACCCTCAGGTTAAGGAC
CGGCTGCGGTCACTGCTGTTGGGGAGCATTAGAGCGGAGCGCGAGGGACA
GCTGGTTGACAGGAGCTTGCTGCGCTCCACGCTGTCCATGCTCATGGAGC
TGGGCATCGAGGGAACGGCCGTATACGAGGAGGACTTTGAGAGGGAGTTc
ctgaggacgacgagggccTTCTACCGGGCAGAGAGCCTGGACGTGATAAG
CAAGAACACCTGTCCTGTTTACATGCGCAAGGCGGAGCAGCGGctcctgg
aggagcaggagagggtggcACAGTACTTGGACCGATCCACTGACCCGAAG
CTGCGAGCCatattggaggaggagctggtgaaGGCGCACGCGAGCAGTCT
GATCGAGATGGAGGGGTCGGGGTGCCGGGCCATGTTTCGTGACGCCAAGA
CGGAGGACTTGGAGCGGATGTACCTCTTGTTCGCCCGCGTCCCCAGCACT
CTGGAGGAGCTTCGGGGGGCCATGGCGGAGTATGTGAagtcggcggggag
ggagctggtggcggaCCAGGAGAGAGTGAGGGAGCCGGTGGTGTTCGTGA
AGGGCCTGCTCGACATGCGGGATAAGTTTGATCGGATCGTCTCAGATGCT
TtccaaggagaaaaagctgcCCAGAAAAAACTGCAGGAGGCGTTCGAGGA
TTTCATCAACATGGACACTCGCTGCGCGCATTACCTTGCCCTTTATGTGG
ACGACCTTCTCAAGGTGGGGTTGAAGgggatgacggaggaagaggcagac
ggGGCCCTGAGCAAGTTTATCGTCATCTTCAAGTTCTTGCAGGACAAGGA
CGTTTTCGAGAACTACTACAAACAGCACTTGAGCAAACGCCTGCTGGGAG
GGCGGTCCGTGAACGACGAGTTTGAGAAGCAGATGATCGTCAAGCTGAAG
ACGGAGTGCGGTTACCACTTTACGAGCAAGCTTGAGGGGATGTTCAACGA
CATGCGGCTTTCCAAGGACGCGATGGAGGAATTTCGAAAGGCGGGCGTAA
GCCGGGTGGGCGGAGTGGAGCTGGAAGTGAACATGCTGACGATGGGCTAC
TGGCCTTCGCAGGCATTGACAACTTgcaacctcccgcccgagATCAAGGC
CTGCTGCCAAGTCTTCCAAAATTTTTACTTGAACAAACATAGTGGGCGCA
AAGTCACGTGGCAGGCGGGCATGGGCTCAGCGGACATTCGTGCCACGTTC
GGGAATGGCCGGAAGCATGAACTGAATGTGCATACCTACTCCATGTGCAT
TCTTATGCTGTTTAATGCTGCTGACACCCTCACGCTGGAGGACATTCAGA
AAGCCACGCAGATCCCTGAGAACGAGCTCCGACGCAATCTGATATCGCTG
TGCACTAACAAGCACCGGATCCTCCGCAAGGCCTCTAAGGGGAAAGGAGT
CACGGACAACGACCGTTTCACCTTTAACGCCAATTTTACGAGCAAGTTGA
GGCGAATCAAGGTGCCTCTGGTCTCTATGAAAGAAGCCGTGGTAgatggg
cgggcgggagagggagagggaggagggggaggcttgGGCCCAGGTGGGGA
GCGGCTTGTCAATGGGATCCCTGCtgcagtggaggaagatcGACGACACC
TGGTTGAGGCAGCGATCGTGCGCATTATGAAGGCACGCAGGAAACTGGGG
CACAATGAGTTGATCGCTGAGGTCACCCGGCAGCTCTCTATGCGTTTTCC
TGCATCTCCCCCGTTCATTAAAAATCGGATCGAAAGTCTAATAGAAAGGG
ACTAtttggagagaggggcaaaTGACCGAAAAACTTACGCTTATTTGGCG
TGAGATTACACATTCGTAGTGTTATAAAACACTGGACACGCCGATCTGCA
ATATAGGTCGGAGGGATGCAACGCGATTGGAGGGCAGCGCTGGGTGTATG
CGATAGGTGTAATAAACGCAAGAGAAACGCCCACCGAGCTCAATGAAGGG
GATGTCGCTGTCACAAAATTAGTGTCCAGTCACACAGGAAGTAGTGGACG
TAAATAACCTCTAAAGTGAGCAAAAGTAGGTAGTCAAAGAATTAAGAACT
GTACAGCATACCA

Coding sequence (CDS) from alignment at CM002468.1:393088..395950+

>rna6383 ID=rna6383|Name=rna6383|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002468.1:393088..395950+ (Nannochloropsis gaditana)
ATGGCCACAAACAAAAAGTTTGTCATTAAGCCATACAAGCAGCATGCACA
GATGGATCGGCAGCGGGCGACCACAGTGTGGGGAGAGCTGAGCGGGGCCA
TTGACGAGATCTTCCGAAAGAACGCCAGCAACCTGAGCTTTGAACATCTT
TACAGGAATGCCTACAACCTCGTCTTACACAAACACGCCGAAATCCTGTA
TCAAGGAGTGCAAAATTCGGTGCAAACCTACTTAAATACAGTGAGCACAT
TCGTCGCTAATGCGTCTGACGAGCGtctgctggaggagatcaaTTTGAGG
TGGGGCGAGCACCAGGTAACCATGAGCATGGTTCGAGATATACTTATGTA
CATGGACAGGACGTACGTACCACAGCACAACAAAACCAAGGTGTACGACT
TGGGTTTGCGAATTTTCCGGGACGCGATCGCCCGGCACCCTCAGGTTAAG
GACCGGCTGCGGTCACTGCTGTTGGGGAGCATTAGAGCGGAGCGCGAGGG
ACAGCTGGTTGACAGGAGCTTGCTGCGCTCCACGCTGTCCATGCTCATGG
AGCTGGGCATCGAGGGAACGGCCGTATACGAGGAGGACTTTGAGAGGGAG
TTcctgaggacgacgagggccTTCTACCGGGCAGAGAGCCTGGACGTGAT
AAGCAAGAACACCTGTCCTGTTTACATGCGCAAGGCGGAGCAGCGGctcc
tggaggagcaggagagggtggcACAGTACTTGGACCGATCCACTGACCCG
AAGCTGCGAGCCatattggaggaggagctggtgaaGGCGCACGCGAGCAG
TCTGATCGAGATGGAGGGGTCGGGGTGCCGGGCCATGTTTCGTGACGCCA
AGACGGAGGACTTGGAGCGGATGTACCTCTTGTTCGCCCGCGTCCCCAGC
ACTCTGGAGGAGCTTCGGGGGGCCATGGCGGAGTATGTGAagtcggcggg
gagggagctggtggcggaCCAGGAGAGAGTGAGGGAGCCGGTGGTGTTCG
TGAAGGGCCTGCTCGACATGCGGGATAAGTTTGATCGGATCGTCTCAGAT
GCTTtccaaggagaaaaagctgcCCAGAAAAAACTGCAGGAGGCGTTCGA
GGATTTCATCAACATGGACACTCGCTGCGCGCATTACCTTGCCCTTTATG
TGGACGACCTTCTCAAGGTGGGGTTGAAGgggatgacggaggaagaggca
gacggGGCCCTGAGCAAGTTTATCGTCATCTTCAAGTTCTTGCAGGACAA
GGACGTTTTCGAGAACTACTACAAACAGCACTTGAGCAAACGCCTGCTGG
GAGGGCGGTCCGTGAACGACGAGTTTGAGAAGCAGATGATCGTCAAGCTG
AAGACGGAGTGCGGTTACCACTTTACGAGCAAGCTTGAGGGGATGTTCAA
CGACATGCGGCTTTCCAAGGACGCGATGGAGGAATTTCGAAAGGCGGGCG
TAAGCCGGGTGGGCGGAGTGGAGCTGGAAGTGAACATGCTGACGATGGGC
TACTGGCCTTCGCAGGCATTGACAACTTgcaacctcccgcccgagATCAA
GGCCTGCTGCCAAGTCTTCCAAAATTTTTACTTGAACAAACATAGTGGGC
GCAAAGTCACGTGGCAGGCGGGCATGGGCTCAGCGGACATTCGTGCCACG
TTCGGGAATGGCCGGAAGCATGAACTGAATGTGCATACCTACTCCATGTG
CATTCTTATGCTGTTTAATGCTGCTGACACCCTCACGCTGGAGGACATTC
AGAAAGCCACGCAGATCCCTGAGAACGAGCTCCGACGCAATCTGATATCG
CTGTGCACTAACAAGCACCGGATCCTCCGCAAGGCCTCTAAGGGGAAAGG
AGTCACGGACAACGACCGTTTCACCTTTAACGCCAATTTTACGAGCAAGT
TGAGGCGAATCAAGGTGCCTCTGGTCTCTATGAAAGAAGCCGTGGTAgat
gggcgggcgggagagggagagggaggagggggaggcttgGGCCCAGGTGG
GGAGCGGCTTGTCAATGGGATCCCTGCtgcagtggaggaagatcGACGAC
ACCTGGTTGAGGCAGCGATCGTGCGCATTATGAAGGCACGCAGGAAACTG
GGGCACAATGAGTTGATCGCTGAGGTCACCCGGCAGCTCTCTATGCGTTT
TCCTGCATCTCCCCCGTTCATTAAAAATCGGATCGAAAGTCTAATAGAAA
GGGACTAtttggagagaggggcaaaTGACCGAAAAACTTACGCTTATTTG
GCGTGA

Synonyms

Publications