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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100105g17.10582.mrna |
| Orig protein id | gnl|cribi|Naga_100105g17.10582 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:292461..294068 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6341 ID=rna6341|Name=rna6341|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp
GGGAGAAAGAGGGCTGAAATTAACCTCCTCACTGCCCGCCCCATCTGTGT
GAGTGTTCCTGACGAGTTCAACACCCTCGCTTTGGGATTTCAAACTCCCT
TTGACCACATATTCCATAAAATTTACAGATTTATCGGATAAATCGATGGA
TGTGGTCGACAATGCCGGCTCGTTTGCTTTCGAAAAGCAAATACAAACCC
TGAAAACCCGGAGCGCAGCGACTATGAATGTGGACCCCCCCCCGTGGCTA
ACGAGGCCCTATAGCACGCAAGGTCCTTTGAACAAGAAGGAGCTGGATCA
TTTTTTCCAGGAGGGATACTTGATAAAACGTGACGTCTTCGCGCCTTCGG
AGCTGCAACCGGTCATGGACGACATCGACAGCCAGGTCGACGCTCTTGCC
CACAAACTCCTCCAGGCCGGGCGCATCACCGACGTCTGTCCCTCCCTCGG
CTTCTACCGACGCATGGCCGCAATAGAGGCACAATGCCCAGGGGCTAGCG
TCCTCCTCCACAAAAACCCCGACCTGCCGCCGTCCTTCCGAGCCCTATGG
TCCGACCCTCGCCTGCTCGACATCGCTCAACAGCTGTTGGGGGGCCCCTC
CGTGCCTGTAGCCGGTCACCCCGTCTGGAATTTGCGGGTGAAGGTCCCAC
AAACCGCCTCCTCTGTTGTGCCCTGGCACCAGGACGCGGCCTACCTGGAC
CCGGAGGCGGCCGCCACCCTGGAGGTAGCTTCTCGTCTGTCTCCTCCGCC
GTACCTCCCCGCCACGCCTGACTTCTCCCTTTCCTCTCCCACGCCCTCCG
TCCTTCCTTTCTCTTCCTCACAGGTCACCGCTTGGATCCCCCTCTTGGAT
GCTAACGCCGCCAACGGCTGCTTGCAAGTGATGCGGCGGGCCCATCAATC
GGGACGGACGGCCCGGCATACGTGCTGCGTCGGCGGTACCTGGTATGTGG
AGATGGACCTGGATGACGCCTCCTCACGGCTGGGGATGGACTGCCGCGAC
GAATCCTTCTGGGACACCTGCGAGGTCCCCTTGGGCTCAGTGCTGTTCTT
AAGTAATCTCATCCCGCACCGGTCCCTCCCCAACGTCTCCGCACACATCC
GCTGGAGCATCGACCTTCGTTGGCAGGATGCCCGGGAGCCCGCTGGCTTC
TGGGGCATCAAGGACATGGTCCTGATGAGGGAGGGAGGGAAGGAGGGAGG
AACGCGCGAGGGCTACCTGGTGGATTGGGATGGTTTCTTGGCCGTGGATC
GAGGGGAGGCGCAGAGTCAGGCGGCGGCGCGGGCCAAGCGGGCAGGGGAA
GGAGGACAGGACGGAGGGAAAGTGGAGGGAAGGGAGATCGAGGGGGAGGG
AGAGAGCGGGAAGGACATGGTTTTGGCAGCAGCAGCGGCGGCATCAGATG
CCTTGACGCCTGTCATTTCTGGCCCGTGGATGTTGCGCTGGGATCTGGTT
CACCACAATGCGCATACGGCGGGGTTTGGAGGGCGGGCGGGAGGGCGGGC
GGGAGGGCGGGAGGGAGGCGGGGCCCGTGGCATGGCACAAGGCCTGACGG
AGGAGTAG back to topprotein sequence of rna6341 >rna6341-protein ID=rna6341-protein|Name=rna6341|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MHRDTTRSTEVMERRRQRFLSRMPTLATSDVAKTRESGAIEGGRGMREGG
STYTTTINKRAIAPIMPPKGGRMKKHTPFFPKVERSCSDKATMLKIFLIG
LLLSLIPLLLNYASRREYPTPPSGGAAVVLSGASTGIGYDAAVHLADDFV
VYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERG
IPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLRA
QAGRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTV
VQPGAVRSAIFEKSQSASQAKLAEDPRELKVYGHMIKEGSTDSIMAKADT
PDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLDKML
LSTFA back to topmRNA from alignment at CM002468.1:292461..294068- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6341 ID=rna6341|Name=rna6341|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp|location=Sequence derived from alignment at CM002468.1:292461..294068- (Nannochloropsis gaditana)
ATGCACCGCGATACCACGAGGAGCACGGAGGTGATGGAGCGACGACGTCA
AAGGTTCCTGTCGAGGATGCCGACGCTTGCCACGTCGGATGTGGCCAAAA
CCCGCGAAAGCGGAGCCATAGAAGGAGGCAGAGGGATGAGAGAGGGTGGG
AAAGAAAATAGATGATGAGGTCACAGGCCAGGGTGTATAGGAGGATCCAC
CTACACTACTACTATAAATAAGAGGGCCATTGCCCCGATTATGCCTCCAA
AAGGGGGCAGGATGAAAAAACACACCCCTTTCTTTCCGAAGGTCGAGCGT
AGTTGTTCGGACAAAGTACGATGTAGTTCTTCTCTTGGTTCTATATTCGT
TTTCTGTTTAGGGGGGCATAGATTGAGATTAAATCGGCTGCATAGAGGAG
ACGCAAAGCACCGAGGCTGGGCAGGGGGGAGGTATTACTACCCCCGGTCT
TGAGCCACGCACGCCCCGCTTTTCTTGCTTGATGTCCGCAAGCACGCGTT
ACATCAACTTTGTTGTGAGCTTTTTGACGTCTTGGAGGAGTAGGATTGGC
GTGCATTTATTTCTTGTACGTGGTCGATGGACACGGTGGACGGCAAAGGC
TACGCTACATGATTTTTTTGCACCTCCTCTTTCCTTGCGTCCCTCCCAGA
CCTCACTTAGGCCACGATGCTCAAGATTTTCCTCATCGGACTCCTCTTAA
GTCTCATTCCCTTGCTCCTGAACTATGCGTCTCGCCGTGAGTACCCCACT
CCACCTTCTGGGGGGGCTGCCGTGGTGCTTTCGGGGGCCTCCACGGGTAT
AGGGTACGACGCTGCCGTCCATTTGGCCGACGACTTCGTCGTCTACGCTG
GTGTTCGGAAGGAAAAAGACGCCGAAATGCTCCGGTCTGTGGGCAAGTCT
ACTCTAGTACCTGTCATTTTGGACGTGACGTCGCAAGATTCGATTGACGA
GGCCTACGTAAAGATCACCGCTGATGCTGCCGAACGAGGCATTCCTGTGT
GGGGCCTGGTGAACAACGCCGGGATCATGACAGCCTCCACGGTGGAGCAC
CACGATGTGGCTGGGATGCAAAAGATTTACGACGTGAATGTGTGGGGTGT
TTTGCGGTTGACGCAGAAATTCCTCCCCTTGCTTCGAGCGCAGGCAGGCC
GCATCGTGCAAATTTCCTCCATCGCCGGCTTCTTGACCATCCCACGTGCC
TCCGGGTATTGTTCGAGCAAGCACGCCTTGGAGTCCTTGAGCGACGGTTT
GCGTCTGGAGCTGGCGCATTACAATGTGTCCGTCACGGTCGTGCAACCCG
GTGCGGTCCGGAGCGCTATCTTCGAGAAGAGTCAGTCTGCCTCCCAAGCC
AAATTGGCGGAGGACCCGCGAGAACTGAAAGTCTACGGGCACATGATCAA
AGAGGGATCGACGGACTCGATCATGGCGAAGGCCGACACCCCAGACTGCA
CGACGAAAGCGATTCGTCAGGCCTTGATGGACCGGTATCCGAAGACACGG
GAGGTGGTGGCGAATATCGATGGCTTGCCTGCCATCTTCGCCCACTACAT
GAAGCACATGCTGCCAGACAGGGTACTGGACAAAATGCTCCTGTCCACGT
TTGCATGA back to topCoding sequence (CDS) from alignment at CM002468.1:292461..294068- >rna6341 ID=rna6341|Name=rna6341|organism=Nannochloropsis gaditana|type=CDS|length=3654bp|location=Sequence derived from alignment at CM002468.1:292461..294068- (Nannochloropsis gaditana)
GCCACGATGCTCAAGATTTTCCTCATCGGACTCCTCTTAAGTCTCATTCC
CTTGCTCCTGAACTATGCGTCTCGCCGTGAGTACCCCACTCCACCTTCTG
GGGGGGCTGCCGTGGTGCTTTCGGGGGCCTCCACGGGTATAGGGTACGAC
GCTGCCGTCCATTTGGCCGACGACTTCGTCGTCTACGCTGGTGTTCGGAA
GGAAAAAGACGCCGAAATGCTCCGGTCTGTGGGCAAGTCTACTCTAGTAC
CTGTCATTTTGGACGTGACGTCGCAAGATTCGATTGACGAGGCCTACGTA
AAGATCACCGCTGATGCTGCCGAACGAGGCATTCCTGTGTGGGGCCTGGT
GAACAACGCCGGGATCATGACAGCCTCCACGGTGGAGCACCACGATGTGG
CTGGGATGCAAAAGATTTACGACGTGAATGTGTGGGGTGTTTTGCGGTTG
ACGCAGAAATTCCTCCCCTTGCTTCGAGCGCAGGCAGGCCGCATCGTGCA
AATTTCCTCCATCGCCGGCTTCTTGACCATCCCACGTGCCTCCGGGTATT
GTTCGAGCAAGCACGCCTTGGAGTCCTTGAGCGACGGTTTGCGTCTGGAG
CTGGCGCATTACAATGTGTCCGTCACGGTCGTGCAACCCGGTGCGGTCCG
GAGCGCTATCTTCGAGAAGAGTCAGTCTGCCTCCCAAGCCAAATTGGCGG
AGGACCCGCGAGAACTGAAAGTCTACGGGCACATGATCAAAGAGGGATCG
ACGGACTCGATCATGGCGAAGGCCGACACCCCAGACTGCACGACGAAAGC
GATTCGTCAGGCCTTGATGGACCGGTATCCGAAGACACGGGAGGTGGTGG
CGAATATCGATGGCTTGCCTGCCATCTTCGCCCACTACATGAAGCACATG
CTGCCAGACAGGGTACTGGACAAAATGCTCCTGTCCACGTTTGCATGAGA
GGATCCACCTACACTACTACTATAAATAAGAGGGCCATTGCCCCGATTAT
GCCTCCAAAAGGGGGCAGGATGAAAAAACACACCCCTTTCTTTCCGAAGG
TCGAGCGTAGTTGTTCGGACAAAATGCACCGCGATACCACGAGGAGCACG
GAGGTGATGGAGCGACGACGTCAAAGGTTCCTGTCGAGGATGCCGACGCT
TGCCACGTCGGATGTGGCCAAAACCCGCGAAAGCGGAGCCATAGAAGGAG
GCAGAGGGATGAGAGAGGGCCACGATGCTCAAGATTTTCCTCATCGGACT
CCTCTTAAGTCTCATTCCCTTGCTCCTGAACTATGCGTCTCGCCGTGAGT
ACCCCACTCCACCTTCTGGGGGGGCTGCCGTGGTGCTTTCGGGGGCCTCC
ACGGGTATAGGGTACGACGCTGCCGTCCATTTGGCCGACGACTTCGTCGT
CTACGCTGGTGTTCGGAAGGAAAAAGACGCCGAAATGCTCCGGTCTGTGG
GCAAGTCTACTCTAGTACCTGTCATTTTGGACGTGACGTCGCAAGATTCG
ATTGACGAGGCCTACGTAAAGATCACCGCTGATGCTGCCGAACGAGGCAT
TCCTGTGTGGGGCCTGGTGAACAACGCCGGGATCATGACAGCCTCCACGG
TGGAGCACCACGATGTGGCTGGGATGCAAAAGATTTACGACGTGAATGTG
TGGGGTGTTTTGCGGTTGACGCAGAAATTCCTCCCCTTGCTTCGAGCGCA
GGCAGGCCGCATCGTGCAAATTTCCTCCATCGCCGGCTTCTTGACCATCC
CACGTGCCTCCGGGTATTGTTCGAGCAAGCACGCCTTGGAGTCCTTGAGC
GACGGTTTGCGTCTGGAGCTGGCGCATTACAATGTGTCCGTCACGGTCGT
GCAACCCGGTGCGGTCCGGAGCGCTATCTTCGAGAAGAGTCAGTCTGCCT
CCCAAGCCAAATTGGCGGAGGACCCGCGAGAACTGAAAGTCTACGGGCAC
ATGATCAAAGAGGGATCGACGGACTCGATCATGGCGAAGGCCGACACCCC
AGACTGCACGACGAAAGCGATTCGTCAGGCCTTGATGGACCGGTATCCGA
AGACACGGGAGGTGGTGGCGAATATCGATGGCTTGCCTGCCATCTTCGCC
CACTACATGAAGCACATGCTGCCAGACAGGGTACTGGACAAAATGCTCCT
GTCCACGTTTGCATGAGAGGATCCACCTACACTACTACTATAAATAAGAG
GGCCATTGCCCCGATTATGCCTCCAAAAGGGGGCAGGATGAAAAAACACA
CCCCTTTCTTTCCGAAGGTCGAGCGTAGTTGTTCGGACAAAATGCACCGC
GATACCACGAGGAGCACGGAGGTGATGGAGCGACGACGTCAAAGGTTCCT
GTCGAGGATGCCGACGCTTGCCACGTCGGATGTGGCCAAAACCCGCGAAA
GCGGAGCCATAGAAGGAGGCAGAGGGATGAGAGAGGGCCACGATGCTCAA
GATTTTCCTCATCGGACTCCTCTTAAGTCTCATTCCCTTGCTCCTGAACT
ATGCGTCTCGCCGTGAGTACCCCACTCCACCTTCTGGGGGGGCTGCCGTG
GTGCTTTCGGGGGCCTCCACGGGTATAGGGTACGACGCTGCCGTCCATTT
GGCCGACGACTTCGTCGTCTACGCTGGTGTTCGGAAGGAAAAAGACGCCG
AAATGCTCCGGTCTGTGGGCAAGTCTACTCTAGTACCTGTCATTTTGGAC
GTGACGTCGCAAGATTCGATTGACGAGGCCTACGTAAAGATCACCGCTGA
TGCTGCCGAACGAGGCATTCCTGTGTGGGGCCTGGTGAACAACGCCGGGA
TCATGACAGCCTCCACGGTGGAGCACCACGATGTGGCTGGGATGCAAAAG
ATTTACGACGTGAATGTGTGGGGTGTTTTGCGGTTGACGCAGAAATTCCT
CCCCTTGCTTCGAGCGCAGGCAGGCCGCATCGTGCAAATTTCCTCCATCG
CCGGCTTCTTGACCATCCCACGTGCCTCCGGGTATTGTTCGAGCAAGCAC
GCCTTGGAGTCCTTGAGCGACGGTTTGCGTCTGGAGCTGGCGCATTACAA
TGTGTCCGTCACGGTCGTGCAACCCGGTGCGGTCCGGAGCGCTATCTTCG
AGAAGAGTCAGTCTGCCTCCCAAGCCAAATTGGCGGAGGACCCGCGAGAA
CTGAAAGTCTACGGGCACATGATCAAAGAGGGATCGACGGACTCGATCAT
GGCGAAGGCCGACACCCCAGACTGCACGACGAAAGCGATTCGTCAGGCCT
TGATGGACCGGTATCCGAAGACACGGGAGGTGGTGGCGAATATCGATGGC
TTGCCTGCCATCTTCGCCCACTACATGAAGCACATGCTGCCAGACAGGGT
ACTGGACAAAATGCTCCTGTCCACGTTTGCATGAGAGGATCCACCTACAC
TACTACTATAAATAAGAGGGCCATTGCCCCGATTATGCCTCCAAAAGGGG
GCAGGATGAAAAAACACACCCCTTTCTTTCCGAAGGTCGAGCGTAGTTGT
TCGGACAAAATGCACCGCGATACCACGAGGAGCACGGAGGTGATGGAGCG
ACGACGTCAAAGGTTCCTGTCGAGGATGCCGACGCTTGCCACGTCGGATG
TGGCCAAAACCCGCGAAAGCGGAGCCATAGAAGGAGGCAGAGGGATGAGA
GAGG back to top
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