rna6335, rna6335 (mRNA) Nannochloropsis gaditana

Overview
Namerna6335
Unique Namerna6335
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length852
Alignment locationCM002468.1:279333..279714 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100163g3.7201.mrna
Orig protein idgnl|cribi|Naga_100163g3.7201
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:279333..279714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100163g3gene6122Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6335rna6335-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24363.1cds6320Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6335 ID=rna6335|Name=rna6335|organism=Nannochloropsis gaditana|type=mRNA|length=852bp
TAAACCTGCAGTCCTTCAATCTCGAAGTAGAAAAGCTAGACGTGCTCATT
GCAGGCGTTTCGCTTTCTTCGACGACATGTGCAAGAGTGCTTTAGTATGC
AAGGTTGCTTCTGTTGTCTTGTCTTGGGGACGCCGCACCGTTGTATTTAT
AGGACTTCGTATCTTGCAGTACTCTCATCTTCCACCCCGTCGAGGGCGAT
GGAGACGAGGGCCTCCTGTTTGGGTTTCAGATGAGCGTTCTAACTTATTC
AACCAACCGCACACGTACTCATAGGTCCACACTATCGATAACATGTCCGA
CGCACCCGAGGCACCCAAGCAAGCGCCTGAGGCCCCCACTCCCCAGGCCG
GGGTGGTTGCAGAGCATCCCGCTCCGACGGGGACCGCCCAAGGGCTCATT
CACAACATCCTTCACGAACAAGAACGCAGTCTGCAGGCCAAGGACGTGCA
CAAACAGCAGGACCTGGCAATGCATGCGGAGCAGAAGCACCACCGCCATG
TGGAGCGGGGTGACGATCCCATGCACGGGAAGAAAGGACTCATGATTGCG
AAGCAGTCTTGGAATGCCCAACGAGGAAGTCATGGGCTTTCGGGACAGGG
GCCGAAATAAGCCACAATTTTTCTTCAGAGGGTAAAGTGACGTTGACGAA
ATGTAAGCGTGTAGGTGAATCATGTGGTAATTGTTTCAGGTAGGACTCAT
CACGTAGTGTAGGGGCCGGTAGACGCGGTAGCGAAAACACAGAACTGTAA
CGCAAACTTGATTTTTCTCTTCTATGGCTATTGGTCATGGCTCTCTAAAG
CTTTTGTATGCAAGGAAACAATTGAAGAAATAAAAGAAGTCGTTTTCGCT
TT
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protein sequence of rna6335

>rna6335-protein ID=rna6335-protein|Name=rna6335|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MSTGLSQSRAPFSASVSILNVLLTKDDRLPRSLRARPGGGGYRATQDEIC
TWESSFSASILSHALSERHLSGGINGVYPEKGI
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mRNA from alignment at CM002468.1:279333..279714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6335 ID=rna6335|Name=rna6335|organism=Nannochloropsis gaditana|type=mRNA|length=382bp|location=Sequence derived from alignment at CM002468.1:279333..279714+ (Nannochloropsis gaditana)
ATGAGCACGTCTAGCTTTTCTACTTCGAGATTGAAGGACTGCAGGTTTAT
CGCCTTGAGAATTTTCAgctgaagaaagggaggaaaaagttcCCGAGGGC
TCGAGACATGCTCGGGCTTAATTGCCCTCGGTTAAAAGCGGGCTTTCCCA
ATCCCGTGCCCCATTTTCAGCCAGCGTAAGCATATTGAATGTGCTTCTGA
CAAAGGATGATCGACTTCCTCGATCGTTGCGAGcaaggccggggggaggc
ggatATCGTGCAACACAAGATGAAATATGCACGTGGGAAAGCTCGTTCAG
TGCCTCGATTCTGTCCCATGCTCTAAGTGAAAGACACCTATCCGGGGGAA
TAAATGGTGTCTACCCGGAAAAAGGCATATGA
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Coding sequence (CDS) from alignment at CM002468.1:279333..279714+

>rna6335 ID=rna6335|Name=rna6335|organism=Nannochloropsis gaditana|type=CDS|length=504bp|location=Sequence derived from alignment at CM002468.1:279333..279714+ (Nannochloropsis gaditana)
ATGAGCACCGGGCTTTCCCAATCCCGTGCCCCATTTTCAGCCAGCGTAAG
CATATTGAATGTGCTTCTGACAAAGGATGATCGACTTCCTCGATCGTTGC
GAGcaaggccggggggaggcggatATCGTGCAACACAAGATGAAATATGC
ACGTGGGAAAGCTCGTTCAGTGCCTCGATTCTGTCCCATGCTCTAAGTGA
AAGACACCTATCCGGGGGAATAAATGGTGTCTACCCGGAAAAAGGCATAT
GAATGAGCACCGGGCTTTCCCAATCCCGTGCCCCATTTTCAGCCAGCGTA
AGCATATTGAATGTGCTTCTGACAAAGGATGATCGACTTCCTCGATCGTT
GCGAGcaaggccggggggaggcggatATCGTGCAACACAAGATGAAATAT
GCACGTGGGAAAGCTCGTTCAGTGCCTCGATTCTGTCCCATGCTCTAAGT
GAAAGACACCTATCCGGGGGAATAAATGGTGTCTACCCGGAAAAAGGCAT
ATGA
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Synonyms
Publications