rna6334, rna6334 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6334
Unique Name	rna6334
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2006
Alignment location	CM002468.1:278530..279381 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100163g4.7193.mrna
Orig protein id	gnl\|cribi\|Naga_100163g4.7193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:278530..279381 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100163g4	gene6121	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24355.1	cds6319	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6334	rna6334-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:278530..279381-
coding sequence from alignment at CM002468.1:278530..279381-

mRNA sequence

>rna6334 ID=rna6334|Name=rna6334|organism=Nannochloropsis gaditana|type=mRNA|length=2006bp
TCCGTCTTCAACCCACCTTGTCTTTTGTCTCCTCCAACAAGCGATTGATC
AGACCTTCGTCGATGATTTTGGCAGGGTCCTCATATTTATGGTGGTGTTC
AGTCTCGATTGACCATTGAGCCAGCCAGCGTTGCTGGTGGTGTCTGGATG
GCAACTTACCTCCCCGGGACGCAGCCGTCGGGGTCGTAAAGAGACTTCGA
GGACAAAGCCGGCCAGACGCCCGCCACAGCATCATAGCAGGGACCGGCAC
ACGCTCAACTATCCTGAATGAGAGGCCGTAGGAAAGATGAGAGGGAAAAC
GCGTGGCTGTCTCGCTTGAAAGCGGAACAAACGCTTCTTGAATTGCGTCT
CTCCTTCTGCTTCAACTTTGTCAGGAAGAACTGAACCAGGTCTTCAAAGT
CACTTTCGCATTCTCACACATGCAACAATCACTCACGCCAGGCAACGGCA
TGCTTCTACCCCGAACACTGCATTATTTTCCTGCAAACGTGGCGGTGCTT
TCGGTCTGTGGCAGCTGCCTAGGTTTCCATACCAAACAGATCCTTCGAGC
CCGACACTTTTGGACATGCTCCTGCCCTCGCGCCTTGGGCCGCCAACGAC
CACTGTCAGTCACAATACGCTATGCCAGCGACAAAGGCACTGCGAGAGGG
GGTGCTGAGCCTCTTTGGTCACCCTTGAAGGACTTCCTTGGCCTCGATCG
TTTGGACACAGGACAAAAGCTGGACATCTCTAGGCGGCAGTTGACAGAAC
TCTTGACAACGAATGATAGGACTTTAATCAAGTCCATGTACGCTGTGGCT
GAGGCTGCGACGACGGCATATTTCGGCACCAAAGTGTACGCCCGAGGCAT
CGTCGAATTTAGCAACGTCTGCACCAAGGATTGCTTTTACTGCGGTATTC
GCAAGCACACGAAGGTACACCGCTACACGATGACAAAAGAGGAGATTTTG
GCCTGTGCGGAATTTGCCTATTCTCAGGGAATGGGCACACTGATGCTGCA
ATCGGGAGAGCTGCCTTCCCCTGAGAGAATCAACTTTATGCTAGATGTGG
TGCGGGCCATACGACGGCGCACAATGGACCTGGCATGCGAGTCTCCCCCC
TTTCCCTCAGCCGGTCCAAACCAGCGTGACTTTCCTTCCCAGCGCGGTCT
CGCCGTCGCCCTCTCCTTGGGTGAGCTCCCGTCGTCAGTCTACCAGGCCT
TCTTGGAGGCAGGGGCCTCCCGCTACCTGTTGCGGATCGAAACCAGCAAT
CCTACTTTGTACACCAGGCTCCACCCTGCCTCCCACTCTTTCCAGGCACG
TCGCAAATGCCTGGAAGAACTGCAGAGAATCGGCTTCCAAGTGGGGACGG
GCGTGATGGTTGGGGTGCCGTTCCAGACCGTGGAGGACCAGGCCAACGAT
CTCCTTTTCTTCAAGGAACTCGACCCCGACATGATCGGACTCGGCCCGTA
CATAGTGCAGTCACAAACGCCGCTGGGCAAGCTCTGGCTGGAGGAGCACG
GGGAGGAATCCGCAGCGAAACAGGAAGCAAACCGAGTGGCGCTTCTGGAG
AGGACCACACGCATGTACGCCCTGGCCCGAATCATGCTGGGCAACGTCAA
CATCGCCGCCACCACGGCACTGGAGGCCTTGGATCCTGAGGGGAGGGAGC
TCGCGTTGCGGCGGGGGGCGAATGTGGTCATGCCCATCATCACGCCACAG
CGCTTGCGAGGCCAGTATGAAATCTATGAAAACAAACCAGGCATCGATCA
GGATGCCTTGGATAGCACCGCGTGTCTGGAGCGGCGGGTGCGAATGGCGG
GGAAGGATTTGCTGCTGGATGGAGGCTGGCATGACCCACCCCATTTTGTT
AGACCCTCTGTAGAATAGTGTGCGAGACAAAAGCCCGAACAGACACGAGA
CCAAAGCGAAAACGACTTCTTTTATTTCTTCAATTGTTTCCTTGCATACA
AAAGCTTTAGAGAGCCATGACCAATAGCCATAGAAGAGAAAAATCAAGTT
TGCGTT

protein sequence of rna6334

>rna6334-protein ID=rna6334-protein|Name=rna6334|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MSDAPEAPKQAPEAPTPQAGVVAEHPAPTGTAQGLIHNILHEQERSLQAK
DVHKQQDLAMHAEQKHHRHVERGDDPMHGKKGLMIAKQSWNAQRGSHGLS
GQGPK

mRNA from alignment at CM002468.1:278530..279381-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6334 ID=rna6334|Name=rna6334|organism=Nannochloropsis gaditana|type=mRNA|length=852bp|location=Sequence derived from alignment at CM002468.1:278530..279381- (Nannochloropsis gaditana)
TAAACCTGCAGTCCTTCAATCTCGAAGTAGAAAAGCTAGACGTGCTCATT
GCAGGCGTTTCGCTTTCTTCGACGACATGTGCAAGAGTGCTTTAGTATGC
AAGGTTGCTTCTGTTGTCTTGTCTTGGGGACGCCGCACCGTTGTATTTAT
AGGACTTCGTATCTTGCAGTACTCTCATCTTCCACCCCGTCGAGGGCGAT
GGAGACGAGGGCCTCCTGTTTGGGTTTCAGATGAGCGTTCTAACTTATTC
AACCAACCGCACACGTACTCATAGGTCCACACTATCGATAACATGTCCGA
CGCACCCGAGGCACCCAAGCAAGCGCCTGAGGCCCCCACTCCCCAGGCCG
GGGTGGTTGCAGAGCATCCCGCTCCGACGGGGACCGCCCAAGGGCTCATT
CACAACATCCTTCACGAACAAGAACGCAGTCTGCAGGCCAAGGACGTGCA
CAAACAGCAGGACCTGGCAATGCATGCGGAGCAGAAGCACCACCGCCATG
TGGAGCGGGGTGACGATCCCATGCACGGGAAGAAAGGACTCATGATTGCG
AAGCAGTCTTGGAATGCCCAACGAGGAAGTCATGGGCTTTCGGGACAGGG
GCCGAAATAAGCCACAATTTTTCTTCAGAGGGTAAAGTGACGTTGACGAA
ATGTAAGCGTGTAGGTGAATCATGTGGTAATTGTTTCAGGTAGGACTCAT
CACGTAGTGTAGGGGCCGGTAGACGCGGTAGCGAAAACACAGAACTGTAA
CGCAAACTTGATTTTTCTCTTCTATGGCTATTGGTCATGGCTCTCTAAAG
CTTTTGTATGCAAGGAAACAATTGAAGAAATAAAAGAAGTCGTTTTCGCT
TT

Coding sequence (CDS) from alignment at CM002468.1:278530..279381-

>rna6334 ID=rna6334|Name=rna6334|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002468.1:278530..279381- (Nannochloropsis gaditana)
ATGTCCGACGCACCCGAGGCACCCAAGCAAGCGCCTGAGGCCCCCACTCC
CCAGGCCGGGGTGGTTGCAGAGCATCCCGCTCCGACGGGGACCGCCCAAG
GGCTCATTCACAACATCCTTCACGAACAAGAACGCAGTCTGCAGGCCAAG
GACGTGCACAAACAGCAGGACCTGGCAATGCATGCGGAGCAGAAGCACCA
CCGCCATGTGGAGCGGGGTGACGATCCCATGCACGGGAAGAAAGGACTCA
TGATTGCGAAGCAGTCTTGGAATGCCCAACGAGGAAGTCATGGGCTTTCG
GGACAGGGGCCGAAATAA

Synonyms

Publications