rna6326, rna6326 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6326
Unique Name	rna6326
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2738
Alignment location	CM002468.1:256530..258445 +

Link to JBrowse

Properties


Property Name	Value
Product	WD40-repeat-containing domain protein
Orig transcript id	gnl\|cribi\|Naga_100163g10.7194.mrna
Orig protein id	gnl\|cribi\|Naga_100163g10.7194
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:256530..258445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100163g10	gene6115	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6326	rna6326-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24356.1	cds6311	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:256530..258445+
coding sequence from alignment at CM002468.1:256530..258445+

mRNA sequence

>rna6326 ID=rna6326|Name=rna6326|organism=Nannochloropsis gaditana|type=mRNA|length=2738bp
ATGCATATGGTACCTATATTGTTTGGGGACCGTGATAGCACAAATGCTTC
CACGCTCGTGCCGTGGTCGAAGGCGACGCTCGTGACTGTCGTACTCCTGT
CATCCCGCCTCGTCGTCATCATAATATGCTTTCGTGCACTCAGGCCACCA
TCATATCGACTTCGAACGCCTGACTCCAACACACTTCTTCTTTCATGAAA
CATATTCATTTACACAGGGCCTGGCTGGTTCGCAGCTGTCCGCGTTCCAA
TTTATGCGAAGACCACCTCCCTCGGGGGGAGCAGTGCACAGACATGCCAC
CACCGCTCTGCTGGCACTGTTGCTTTCTTGCGCCAGGCCCTCGCTGTCCT
CTCCATTCTTTCCCAGTCCCGCTCCTCCATATTCGCCATCAAGTAGACCA
TGTCGCCTGAACATGCACATGCCGGGGACAACGGCCCAGCCCTTCGGCAA
ACGTGGAGCGTCACTCCCAAGCGCCTTCGGGGGAATGCTTCCTCGGAGCA
ACCGATCACCTCGTGCCTCCTATTGCTCGGCTGTGCCACGGTCATCTGCT
TCCCATCCGTCCATTTCTTCCTATCCGGGGCCTGTCTCCGTGAGCAACCC
CGAGGAAGCGGGGTCGGCACCTCCCGCCTGGATGGCAGCTCTTCTGAAGA
GCCGCCTGCACGCACGCGGCGGGATGGAAAGATGGGGGGGAATAAGCCGG
GCCTTGTCGCGTTTCCGGGCATGGATCTCGGTGCAATCACCCCGCGAATC
TCTCATCCGGAGGGAAGGAGCATGGGCCTCGCACGGCTTGGAAGAGGACG
GGAGGGAGGGAGGGAGGGAGGGAGAGACGGAGGAAAGCAGGACGTGGAGA
AAGGCGGCCAGGGCCGTGTCCTGCAATGCTCAGAAGTTTTTTGCATGGTG
CAATGCTCAGAAATGTCGGCCGTGGCCCTGTCGGTATGGACAGCAGGCTT
CTCCTAGGCAAAGGACATCGTTCTCCCCCTCCCCGCCAGACCGAAAGGCG
TTTGCCTCCCTCTGCCGCACCCTCGGCCCCCGCTTGGTACCCCAGGTCTC
TTTCCTCCTCCTTTTTGTTCTCTTCGCCGCGTTTCTCCCCCCCCCCCTGG
CCGCGCAGGCCATGGCCCTCCCTTCTCCTCCTACCGGGGACGGGAACCTG
CCTTCCCCAAGCGGGGTCTCCCCTTGGCAACGCGGCTTGATCTTCGCCAC
CCTTTTCGTCATCTCCGCCGCTTTCCACGCGGCGGAGACCAGCATCACCA
CCCTCTACCCCTGGAAAGTCAAGGAGTTCGCCAAGGAAGAAGGCGACAAC
TCTCCTTTTCGCATCTTGGAACGCGATATCACCCGGGTCCTGACCACCAT
CCTGGTCGCCACCACCGCCTGCACCATCTACTCGGCGGCGCTCTTCACCA
ACCTGGCCATGGAGCTCCTAGGGGCCCGGGGCGTGGCTTACTCCACCGTC
GGCCTCACGGTCGTGACCTTGGTCTTCGGCGAGTTGATCCCCAAGAGCCT
GGGGGTGAGTAACGCGGAAATGGTGGCTCGGATCATGGTGCCGCCCATCA
ACCTTCTGGCCGTGGTTTTGTCGCCCGTGGGGAAGGTCCTCTCCATGTTC
GCCAAGCTCGTCCTCCGTCTCCTCGGCATCAAAGCCGATGACGACGAGCG
CGTCTCGGAAGACCAGCTACGGCTCTTAGTCGCAGGAGCCCAAAAATCGG
GGGGCATCGAGGCGCAGGAGGGGCAAATGATCAACCAAGTCTTGAACATG
CAGGAAAAACGCGTGTCGGAGGCAATGTGCCCCCGGGTAGACGTGGAGGC
CCTGGACAAACGCTCTTCCCTTTTGCAGCTCCAAGAGCTCTTCCAGCGGA
CCCGTTATTCCCGCATCCCTGTTTTCGACGGGGAGATAGACAAGATCATC
GGGGTGGCGATGAGCAAGGATCTGCTCGAGTACGTCTTCAGCAAGGAGCA
GAGCAACGTCCTGGACCTCCCTGTGGAGACGATCATGCAACCCACTTACT
TCGTGCCGGAAACGATGACGATATGGACTTGCTTCCAGGAAATGCGCCAA
CGCCGGGTCCACATGGCCATCGTCGTGGATGAGTACGGAGGCACCGCCGG
CGTGATCACCCTGGAAGACATTCAAGAGGAAGTTTTCGGGGAGATTTATG
ATGAAGAGGACATCGAAGAGGACCATCACGGGGAAGACCTTATCAAAATG
ATTGAGGATGACGTCTATCTGATTCAGGGGAACGCCGACCTGGAAGACGT
GTGGACCGAGCTCGGCATGGAGGACAAGGAAGAGGTGGTTCGGGGAGACT
TCGCCACCTTCGGCGGCTATCTTTGCTCGCTTGCCGGTGAGATACCGGCT
GTCAGTGATCACATCGTCGTGCCTGGCTACATTTTCACAATCGAACAGGC
GGACGAGCGGCGCATCATTGAAGTGAGGGTGGAAAGGGTTTACGTTGTCG
ATGGAGGGGAGGAAGAGGAGAGGGAAGGAGAGGAGGAGGAGAGAGAAATT
ACTGAAAGGGAGGAGGAAGAAGAGAGGAAAGGGAGCAGAGAGGGAAGCAG
GGAGGGAGGAAAGCTGAGGGAGAAAGTGGAGTGAATTTAACCCGAGAAGG
AAAACGCGACATATGGAGACGGGGCGAGTTGGTGGGGGCATTCAAGTGCA
GGGACAGCTTCTTCATGGGAAATATGACTGTTGTGTAAGGGCAACGGCGA
ATGCAAAGGAAACAAAATCGGCTGTGCTTCTTTCGATA

protein sequence of rna6326

>rna6326-protein ID=rna6326-protein|Name=rna6326|organism=Nannochloropsis gaditana|type=polypeptide|length=536bp
MVDSLSHTLPFPAFAVDWVDAHNIVITGGGGASKTGVPNGVLLYLVRGGV
ERLVQRRFYQTGDELPYFAKALPSLDLLAVAIGNRVELLRLHNIMPLTRV
LELAPDPNVMDPTMVIAFYQGTGTTGVDAPDNMPQDATNILMAVGAHDGH
IRLLKIAPSETQQTEGVKSHESEGPPTVSQLGITPTATEKPYRDIAFHPS
GCFVLGACEDGSWRAFWVCRGERQDHQGACPPAFTLVATSKGGMEGSTES
AAGIVAKDQKQGIFYTCRCGKFSEDGRFLFTVHYVRRGPKNTDKRPVLTK
WGLELRRGEEQGGRGEARVSVRVVRSVCLAGVDPIMCIDLRGPVGVAGDC
SGRTIIFQTRNLSWKAREKMHNFGVTSLSFYPAWPLAGPPHASTVREEDV
RIASTSGDKTLRLQYLQASRQDHKRMGWIRWSFSVLLWLFSTVMYLLLFV
LVLLGLMVALALVWDLPPDRVFDQFLAGVYEPTVWQPAVAQMQVLCREGL
AVLRVSQGYVQEKMGPWVSTLLNRARVAITGGVEEL

mRNA from alignment at CM002468.1:256530..258445+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6326 ID=rna6326|Name=rna6326|organism=Nannochloropsis gaditana|type=mRNA|length=1916bp|location=Sequence derived from alignment at CM002468.1:256530..258445+ (Nannochloropsis gaditana)
ggcgcGTCAAGAATCATGGTCGATAGCCTTTCGCACACGctgccttttcc
tgctttcGCTGTAGACTGGGTTGATGCACACAACATTGTCATTacgggtg
ggggaggcgccaGCAAAACCGGCGTTCCAAACGGTGTCCTTTTGTATTTA
GTCCGCGGCGGGGTCGAACGTTTAGTGCAACGACGCTTCTACCAGACGGG
TGATGAACTGCCATATTTTGCCAAagcccttccttctctcgaCCTGCTTG
CCGTTGCTATTGGAAATCGCGTGGAACTCCTCCGTCTTCACAACATAATG
CCCTTGACTCGTGTCTTGGAGTTGGCCCCTGACCCGAATGTCATGGACCC
GACCATGGTAATTGCTTTCTACCAAGGCACAGGCACAACTGGCGTTGACG
CGCCAGACAACATGCCGCAGGATGCTACCAACATTTTGATGGCCGTAGGG
GCGCACGATGGACACATTCGATTGTTGAAAATAGCCCCCTCAGAGACGCA
ACAGACAGAGGGTGTGAAAAGTCACGAAAGCGAAGGTCCCCCTACCGTGT
CGCAGCTTGGTATAACCCCCACAGCCACTGAGAAACCATATCGAGACATA
GCTTTCCACCCTTCAGGCTGCTTTGTCCTAGGTGCGTGTGAGGATGGAAG
CTGGCGTGCATTTTGGGTCTGTAGGGGCGAGCGGCAAGACCACCAGGGCG
CGTGTCCTCCGGCCTTTACCCTGGTCGCCACCAGCAAGGGCGGCATGGAA
GGAAGCACGGAATCCGCAGCAGGAATTGTGGCAAAGGATCAGAAACAGGG
CATTTTTTACACATGTCGGTGTGGCAAATTTTCTGAGGATGGTCGGTTTT
TATTCACCGTGCACTATGTCCGGCGGGGACCCAAAAATACCGACAAACGG
CCCGTCTTGACCAAATGGGGGTTGGAGCtgcgaagaggagaagagcaagg
gggaaggggggaagcaaGAGTGTCAGTCCGGGTTGTGAGAAGCGTTTGCT
TGGCGGGTGTGGACCCGATCATGTGCATCGATCTGCGGGGCCCCGTGGGA
GTAGCGGGGGACTGCAGCGGGCGGACCATCATTTTCCAAACCAGGAATTT
GTCCTGGAAAGCCCGGGAAAAAATGCACAATTTTGGAGTtacttctcttt
ctttttatCCCGCCTGGCCCTTGGCGGGCCCGCCTCACGCGTCCACtgta
agggaggaggacgtgcgaATAGCCTCGACTTCCGGCGACAAAACCCTGCG
GCTTCAATACCTGCAAGCTTCCCGTCAAGATCACAAACGGATGGGGTGGA
TCCGCTGGTCATTTAGCGTTCTCCTCTGGCTCTTCTCGACGGTGATGTAc
ctcctgctcttcgtcTTGGTCCTGCTCGGGCTGATGGTCGCCCTGGCCCT
CGTGTGGGACCTACCTCCGGACAGGGTCTTCGACCAATTCCTGGCAGGCG
TCTACGAGCCTACAGTCTGGCAACCGGCAGTGGCGCAGATGCAGGTGCTA
TGTAGAGAAGGACTGGCTGTTTTACGCGTTTCCCAGGGATACGTgcagga
aaagatggggcCGTGGGTTTCCACGCTCCTGAACAGGGCTAGAGTGGCTA
TCACGGGTGGGGTGGAAGAGTTGTAGCAATGGCATGAAAGCATTAGAGCG
ACACTTTGGCGAAGCAGTATGCCGGCTTTTTAATCCGTACCACTCAATTA
TCCAGCCTTCAAAAGCTCATATGGACACAAAAATCAGGCAGCAATTCGAT
AAATTTAagcgaagaaaggagaatCCCTTTTGAGCAGGCGACAAAGAGCG
AAGTCGTCATGTGTGTGTATTACCATACGGAGGAACATAATAAAAATCGA
ACCAAACCGCGTATCCTGTGAAAAGTCCGAGGACAGTCGGGTCGATCAAC
ACAAGAGCGAAGAGCG

Coding sequence (CDS) from alignment at CM002468.1:256530..258445+

>rna6326 ID=rna6326|Name=rna6326|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002468.1:256530..258445+ (Nannochloropsis gaditana)
ATGGTCGATAGCCTTTCGCACACGctgccttttcctgctttcGCTGTAGA
CTGGGTTGATGCACACAACATTGTCATTacgggtgggggaggcgccaGCA
AAACCGGCGTTCCAAACGGTGTCCTTTTGTATTTAGTCCGCGGCGGGGTC
GAACGTTTAGTGCAACGACGCTTCTACCAGACGGGTGATGAACTGCCATA
TTTTGCCAAagcccttccttctctcgaCCTGCTTGCCGTTGCTATTGGAA
ATCGCGTGGAACTCCTCCGTCTTCACAACATAATGCCCTTGACTCGTGTC
TTGGAGTTGGCCCCTGACCCGAATGTCATGGACCCGACCATGGTAATTGC
TTTCTACCAAGGCACAGGCACAACTGGCGTTGACGCGCCAGACAACATGC
CGCAGGATGCTACCAACATTTTGATGGCCGTAGGGGCGCACGATGGACAC
ATTCGATTGTTGAAAATAGCCCCCTCAGAGACGCAACAGACAGAGGGTGT
GAAAAGTCACGAAAGCGAAGGTCCCCCTACCGTGTCGCAGCTTGGTATAA
CCCCCACAGCCACTGAGAAACCATATCGAGACATAGCTTTCCACCCTTCA
GGCTGCTTTGTCCTAGGTGCGTGTGAGGATGGAAGCTGGCGTGCATTTTG
GGTCTGTAGGGGCGAGCGGCAAGACCACCAGGGCGCGTGTCCTCCGGCCT
TTACCCTGGTCGCCACCAGCAAGGGCGGCATGGAAGGAAGCACGGAATCC
GCAGCAGGAATTGTGGCAAAGGATCAGAAACAGGGCATTTTTTACACATG
TCGGTGTGGCAAATTTTCTGAGGATGGTCGGTTTTTATTCACCGTGCACT
ATGTCCGGCGGGGACCCAAAAATACCGACAAACGGCCCGTCTTGACCAAA
TGGGGGTTGGAGCtgcgaagaggagaagagcaagggggaaggggggaagc
aaGAGTGTCAGTCCGGGTTGTGAGAAGCGTTTGCTTGGCGGGTGTGGACC
CGATCATGTGCATCGATCTGCGGGGCCCCGTGGGAGTAGCGGGGGACTGC
AGCGGGCGGACCATCATTTTCCAAACCAGGAATTTGTCCTGGAAAGCCCG
GGAAAAAATGCACAATTTTGGAGTtacttctctttctttttatCCCGCCT
GGCCCTTGGCGGGCCCGCCTCACGCGTCCACtgtaagggaggaggacgtg
cgaATAGCCTCGACTTCCGGCGACAAAACCCTGCGGCTTCAATACCTGCA
AGCTTCCCGTCAAGATCACAAACGGATGGGGTGGATCCGCTGGTCATTTA
GCGTTCTCCTCTGGCTCTTCTCGACGGTGATGTAcctcctgctcttcgtc
TTGGTCCTGCTCGGGCTGATGGTCGCCCTGGCCCTCGTGTGGGACCTACC
TCCGGACAGGGTCTTCGACCAATTCCTGGCAGGCGTCTACGAGCCTACAG
TCTGGCAACCGGCAGTGGCGCAGATGCAGGTGCTATGTAGAGAAGGACTG
GCTGTTTTACGCGTTTCCCAGGGATACGTgcaggaaaagatggggcCGTG
GGTTTCCACGCTCCTGAACAGGGCTAGAGTGGCTATCACGGGTGGGGTGG
AAGAGTTGTAG

Synonyms

Publications