rna6324, rna6324 (mRNA) Nannochloropsis gaditana

Overview
Namerna6324
Unique Namerna6324
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length875
Alignment locationCM002468.1:249283..250953 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g1.10069.mrna
Orig protein idgnl|cribi|Naga_100246g1.10069
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:249283..250953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100246g1gene6113Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24374.1cds6309Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6324rna6324-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6324 ID=rna6324|Name=rna6324|organism=Nannochloropsis gaditana|type=mRNA|length=875bp
TTCGTGATGCTGACAAGACTCGCGCATCCATTGACCGGGAAGAACATGCA
GGACCTGTTTCGGGCGGACCGGACACAAATCGCGCGGTGGACGAACGCCT
GCCTCGGATGTCTCCATCTGACCCTAACGATCCTAGGCCGATATGCAAGC
CCCAAGTGAATCAAGCTTCGTACTATTCCGAGTACTACAAGGCTCACGGC
TTCAAGTTCCAAGGCGGCTTGAGCGTCACGGGCCTCTTCCAGGCTTTCTT
CGGCCCAGGTAAGCCCATACTTCCTCTCTCATGCGTGTATTCCATCCTCC
ATTCACGAACCCACTTGTCTCCCACACCACCAGAGGGTGGCAAGGAGAAG
GACTCGACGCTCTGGGCCAAATCTTGCGTTTCCGACTACCTCAATTTCAT
CCGAGAGTGCAGGGAGTCTGATTACTGTGACGGTGGGCGCTGGTCTGCTG
TCGGGGACCCGGCCTACAACGGGTGCAAGTAGAATCTTGTCTGCGCCTTC
GACCCCCTCCAATACCTCAGCCAGGAACAGCTCCACTTCAACACGGGCAT
CACCCGCGTCCGAGTGACGGGTGGGCGTTTACGCATCTCTACAACCTCTG
GGAGAGCCTTCAATTCAAGACCTTGAAGAGAATTGGGTGCACCCCGTTTG
TGAAGCACATCATGGTCTGCGTCCTTCTCACGAACATGCGCACCTGCCTC
CGCGGGCAAAATCAGATCTCGACATACTTCCAAACCTCTCCCCCCACACT
CGACGAATACCAGGACTTGTTCAAGCCCATCCTCAGCCGCATCGAAAACC
ACTTACAGGACAGGACCTCGACGACGCGCTAAACGCCGTCTCCTGAAAAA
AGAAACCAACCAAAAAGGAAATCCA
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protein sequence of rna6324

>rna6324-protein ID=rna6324-protein|Name=rna6324|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MSLSFRARGTSGGLFSGIFPSSLSTSSSELMTKFLPSNSLSETVEGIEGI
RSFAQARVKEDWNRESGKWKRQICALVPGRRGAGGEGEGAMKEGKETDEE
FLIVLTAEGLFYRFELDVRRGGNCRLLDEKTLLQEEAASQAGAPRLLGGK
TDEAGQEKSFNPHHSRPNG
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mRNA from alignment at CM002468.1:249283..250953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6324 ID=rna6324|Name=rna6324|organism=Nannochloropsis gaditana|type=mRNA|length=1671bp|location=Sequence derived from alignment at CM002468.1:249283..250953- (Nannochloropsis gaditana)
TTGAGGCAGCTTCTTAGCATTTCCCTCCCATGACCCCGGCGTCGTCCTCT
TGTACGATGCGCTCTGTCCCCGTCTGCTGAATCAAATCACGGCGCACAAA
TCGAAGCTGGCCGCACTGGCTTTCGCCCTCGACGGGTCTCTCCTGGCGAC
CGCATCCCAGCAGGGAACCGTGATACGCGTCTTCAGCGTGCCTGCAGGGG
ACCCTCTATTCACCCTACGACGGTAAGAAGACGGAATTGAAAGGGGGGAA
GGCGACGAATAGAAGGAATGTCTTATAACCTGAAGGCATTCGTGGAGCAT
GGGTTTATCGGGGGGGGGGAATGCGGCGGGAGACTGTGACGTGGTTTTTT
TCCTCAGGGCTGCGCCACCGGCACGATTGACCCGAAGCATCTTCATCCGC
ACGTCGGGCCGTCTGTAGCTCAATCAGGCGATTTCACGCGGGCATGTGAA
GGGATGGAACGGGAGGCCCTTCCGCGAGCGGGGGAGGCCCGATTGGTCTT
GATGTCCGGCGAAACGAGCCGTGCCAGGTCTCAACCCCTCTTTTCCCCGT
CTTTACACAGAGGACATTCCCCTTGCACCATATATTCGCTTGCATTCAAC
CGGGCAGGGTCTCGACTGGCCACCTCGAGTGACAAAGGGACTGTTCATGT
ATTTCACCTTTCCTCTTCCCCTCCTTCGACTACCTCCTCTCCCACCCCTC
CATCCCTCCGACCGCCTCGCTCCGACCAGAGTAAACAGTCCCAGGACCCT
GCTTCATCCTCGCATCAGATGTCGCTGTCATTCAGGGCGAGAGGTACTAG
TGGAGGGCTCTTCTCTGGCATTTTTCCTTCTTCCTTGTCCACCTCCTCCT
CCGAGCTCATGACCAAGTTCCTTCCTTCCAACTCCTTGTCGGAGACCGTA
GAGGGTATAGAAGGCATCCGCTCCTTTGCTCAAGCGCGTGTGAAAGAAGA
CTGGAACAGGGAAAGTGGGAAATGGAAAAGGCAGATTTGTGCTTTAGTGC
CTGGCCGACGCGGGGCCGGTGGAGAGGGGGAGGGGGCGATGAAAGAAGGC
AAGGAGACGGATGAAGAGTTTTTGATCGTATTGACCGCGGAAGGTCTTTT
CTACCGGTTTGAGCTGGATGTGAGACGGGGAGGAAATTGTCGACTGTTGG
ACGAAAAAACATTGTTGCAAGAAGAAGCTGCCTCCCAGGCCGGTGCTCCC
CGCTTATTGGGCGGCAAGACGGATGAAGCAGGGCAGGAAAAAAGTTTTAA
TCCACATCATTCACGCCCAAATGGGTAGGAAATGGGAAAGTTAAGTTTTG
AAAAAGAATTGAAACACGTGTAGATGCATTTTTGGCCGAAATTTACATCA
CATCGCCTCGCTGATGCTGCGATCATTCCGACCAAAATTTGGAGAAGCGG
AGTGTTTGAAGAAGGGGACGCTTCGGGCGGACGGGTTGGTATTATGGTGC
TCGATTAATTGGGGGGTACGTACTTGATCGAACGCAAATTCCATGTCGTT
TGATATTGAAAATCGCTTCACAAAAAGGTACCTGTGCACGGTTGCCACGG
TGACAAAGGATGGTAAATCAAAAAAATGAAGGCGGTGTCGTGGATTTCCT
TTTTGGTTGGTTTCTTTTTTCAGGAGACGGCGTTTAGCGCGTCGTCGAGG
TCCTGTCCTGTAAGTGGTTTT
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Coding sequence (CDS) from alignment at CM002468.1:249283..250953-

>rna6324 ID=rna6324|Name=rna6324|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at CM002468.1:249283..250953- (Nannochloropsis gaditana)
ATGTCGCTGTCATTCAGGGCGAGAGGTACTAGTGGAGGGCTCTTCTCTGG
CATTTTTCCTTCTTCCTTGTCCACCTCCTCCTCCGAGCTCATGACCAAGT
TCCTTCCTTCCAACTCCTTGTCGGAGACCGTAGAGGGTATAGAAGGCATC
CGCTCCTTTGCTCAAGCGCGTGTGAAAGAAGACTGGAACAGGGAAAGTGG
GAAATGGAAAAGGCAGATTTGTGCTTTAGTGCCTGGCCGACGCGGGGCCG
GTGGAGAGGGGGAGGGGGCGATGAAAGAAGGCAAGGAGACGGATGAAGAG
TTTTTGATCGTATTGACCGCGGAAGGTCTTTTCTACCGGTTTGAGCTGGA
TGTGAGACGGGGAGGAAATTGTCGACTGTTGGACGAAAAAACATTGTTGC
AAGAAGAAGCTGCCTCCCAGGCCGGTGCTCCCCGCTTATTGGGCGGCAAG
ACGGATGAAGCAGGGCAGGAAAAAAGTTTTAATCCACATCATTCACGCCC
AAATGGGTAG
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Synonyms
Publications