rna6306, rna6306 (mRNA) Nannochloropsis gaditana

Overview
Namerna6306
Unique Namerna6306
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1095
Alignment locationCM002468.1:212521..214213 +

Link to JBrowse

Properties
Property NameValue
Productnicotinate-nucleotide pyrophosphorylase
Orig transcript idgnl|cribi|Naga_100313g7.7272.mrna
Orig protein idgnl|cribi|Naga_100313g7.7272
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:212521..214213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100313g7gene6097Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6306rna6306-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24382.1cds6291Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6306 ID=rna6306|Name=rna6306|organism=Nannochloropsis gaditana|type=mRNA|length=1095bp
TGGCATAACTTCTCTTGTATCACAAAACAGGAAAACCAAAGCTCTGTTGA
GCGGTCATAGAAATACGACTGCCTGGACTTGGAGATGTCTAGCTTAGATG
GACCTGAGGACCAGGACAAAAAGCGGCGCAGACTCGTTTTGCACCTCGCG
AAGTCCGATCCCCTTCCCGCCGCGGCCAGATCTCTGCTTGCACCGCAGCA
CTCCTTGAATACCAGCGACCATGGCAAGTGTATGGATGAAAACAGTGAGA
GCATTGTAATGACGGGGGGAATCGCGGAGAAACCCGTGCACGACCTGACT
CTAGAGAGTGACGAGGACGACGAGGAGCAAGTGGAGGTTATCGAGTCCCC
GCATCCCCGAGGTTCTGGAATCGAAAATGGCCGCGAGACTGCTGCCAGCA
ATCCATGTGCCGCGGAAACACAGTCAGAACTCAAGAAAAGCTCGAAGAAC
GGGGCCGAACACGCGAACTACTCCAGCAGTAGCGGTGGGAAGGTGGGCTC
GTCGGCAAGTCTCCCTCTACTTCCCTTCTACCTGGGCCAGGTCTGTGGTC
TCTCCCCTGAATACAACGCGCAGTGCCTGGGGTTGGAGGATATTTTCTCC
GGTGCTTTTCATCGCGCCATTGTCTGCAACTACATGTACGAATGGTCCTT
CTTCCTGGAGACCCTGCCCCGCCTCCTCTCCATCCCTTGGCTGTGCATCT
ACGGAGATGAAAACCCGAGCACGCCCCAGATTTCCGAAGCCTTTCCCAAC
ATCGCCACCTTCAAACCTAGGTTCCGCAACACACCCTTCGCCTGGGGAAC
GCACCATTCCAAAATGGCCCTGCTATTGTACGAGGGGGGCATCCGCGTGA
TGATCTGCACGAGCAATTTCATCGAGGTGGACTGGCACAACAAGACGCAG
GGGATCTGGGTGCAAGACTTTCCAAAATTGCGCGAGGAAGACAAAGCGGA
CGATTCCTTGTTCGGTCGGGACCTGAGGGAGTACCTGCAGGCTTTGAATG
GTTTCGAGAACGAGTGCGGGTCGCGAGGTGGGGAAGGAGGAAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGGAGGAGGCGGAAGGACGAG
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protein sequence of rna6306

>rna6306-protein ID=rna6306-protein|Name=rna6306|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MQGNIAQALPPWQVTRAVLGWLEEDVPSMDIGGLVVGETPTTALLYGKSK
GILCGKVFFDAVFKALDCTVEWMEGMEDGAVLSPPVPSKATTYPNQGKQD
ETDREQSIKVHVATVKGKARHILLGERTALNILTRASGIATISRASVDIG
RRAGWHGTIAGTRKTTPGFRMVEKYALLVGGAATHRQDLSQMVMLKDNHV
WSTGSITKAVKAARGVGSFSIKIEVECQTLSQAQEAGAAGADVIMLDNFA
PPQLKETAALVKSQYPHVVIEASGGITTETLEEYFSPHVDVISRGSLTQG
YPALDFSLKIVPLGTR
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mRNA from alignment at CM002468.1:212521..214213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6306 ID=rna6306|Name=rna6306|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp|location=Sequence derived from alignment at CM002468.1:212521..214213+ (Nannochloropsis gaditana)
CAGGTCCATCTAAGCTAGACATCTCCAAGTCCAGGCAGTCGTATTTCTAT
GACCGCTCAACAGAGCTTTGGTTTTCCTGTTTTGTGATACAAGAGAAGTT
ATGCCAGGAACTGTacaggagggaaatgagcACACCTTCAGTAAGGAGTA
TGCGATATGGCGATTCCATGTCTGAGCAAAGGCTGTGACACCACTCCGTT
CGTGAAGACTGCTTACATGGTAAGCATGTAATATtttgagagaggaagct
ACGCATCTCTGCTTTTCCCGTCATTAACATGTCGCAGTTGACCACAACAA
CAGGGTCCCAAGGTTGTAAAGACCACGTACGTGTTGAGGaaaaacctccc
caccccttggCACAGGGCTGAGCAAGCACACCGacaccccctccccaaaa
AGGACTCGGCAACGAGCGAATTAAAAACGATGCAGGGCAATATAGCACAA
GCACTCCCGCCCTGGCAAGTGACGCGCGCTGTCCTTGGCTggttggaaga
agacgtaCCTAGCATGGATATCGGTGGCCTTGTTGTGGGTGGTGAGTACG
CTCGATTTTGGCAACGGCATTGTCTCTTTCCCGTTGCTGCTTTGTATGCT
TCATATAACATGCTACTAAAATTCTACTTTTTTCTTTACATAAGTGATCG
TAAATTTTCATGGGCGTTTTTCGGTGAGGTATTTTTATCTCTGCACTCCA
CCTCTTACTCCGCTCTTGCGTGCTTTCATTGCTATCATCCCACAGAAACG
CCTACGACCGCGCTCCTCTACGGAAAATCCAAAGGGATCCTTTGTGGAAA
AGTTTTTTTTGACGCGGTCTTTAAAGCGTTGGATTGCACGGTGGAGTGGa
tggaaggaatggaagatGGAGCGGTGTTGTCTCCTCCTGTACCCAGTAAA
GCAACCACATATCCCAACCAGGGAAAGCAAGACGAGACTGACAGAGAGCA
GTCTATAAAGGTCCACGTGGCAACAGTCAAAGGCAAAGCACGCCATATTT
TGCTTGGAGAACGCACGGCCTTGAATATTTTGACTAGGGCAAGTGGGATC
GCCACCATCTCCCGGGCCTCGGTGGACATTGGGCGTCGCGCAGGGTGGCA
TGGGACCATTGCGGGCACCCGCAAGACCACTCCCGGCTTTCGAATGGTGG
AAAAATACGCCCTCTTGGTCGGAGGGGCGGCCACACACCGGCAGGATTTG
TCGCAGATGGTCATGCTCAAGGACAATCACGTgtggagcacggggagcAT
CACCAAGGCCGTGAAAGCGGCGCGAGGGGTGggttccttttccatcaaaA
TAGAGGTCGAGTGCCAGACCTTGTCGCAAGcgcaggaagcgggggcCGCA
GGGGCGGACGTGATCATGCTTGACAATTTTGCCCCTCCTCAACTGAAAGA
AACGGCTGCACTCGTGAAAAGCCAGTACCCGCACGTAGTGATAGAAGCCT
CGGGAGGGATCACCACGGAGACCCTGGAGGAATATTTTTCCCCTCATGTG
GATGTGATCAGTCGCGGGAGCCTGACCCAGGGCTATCCGGCTTTGGATTT
CTCCTTGAAAATTGTGCCGCTGGGTAcgcgatgagggagggaggagggga
ggagcgaggggtaCAGGAAGAGATCCGGCTTAAATGCGACGCAAGCTGCG
AATTCCGGAGACGAAAGAAATGTGCGATGCCACTTCCTAAGCA
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Coding sequence (CDS) from alignment at CM002468.1:212521..214213+

>rna6306 ID=rna6306|Name=rna6306|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at CM002468.1:212521..214213+ (Nannochloropsis gaditana)
ATGCAGGGCAATATAGCACAAGCACTCCCGCCCTGGCAAGTGACGCGCGC
TGTCCTTGGCTggttggaagaagacgtaCCTAGCATGGATATCGGTGGCC
TTGTTGTGGGTGAAACGCCTACGACCGCGCTCCTCTACGGAAAATCCAAA
GGGATCCTTTGTGGAAAAGTTTTTTTTGACGCGGTCTTTAAAGCGTTGGA
TTGCACGGTGGAGTGGatggaaggaatggaagatGGAGCGGTGTTGTCTC
CTCCTGTACCCAGTAAAGCAACCACATATCCCAACCAGGGAAAGCAAGAC
GAGACTGACAGAGAGCAGTCTATAAAGGTCCACGTGGCAACAGTCAAAGG
CAAAGCACGCCATATTTTGCTTGGAGAACGCACGGCCTTGAATATTTTGA
CTAGGGCAAGTGGGATCGCCACCATCTCCCGGGCCTCGGTGGACATTGGG
CGTCGCGCAGGGTGGCATGGGACCATTGCGGGCACCCGCAAGACCACTCC
CGGCTTTCGAATGGTGGAAAAATACGCCCTCTTGGTCGGAGGGGCGGCCA
CACACCGGCAGGATTTGTCGCAGATGGTCATGCTCAAGGACAATCACGTg
tggagcacggggagcATCACCAAGGCCGTGAAAGCGGCGCGAGGGGTGgg
ttccttttccatcaaaATAGAGGTCGAGTGCCAGACCTTGTCGCAAGcgc
aggaagcgggggcCGCAGGGGCGGACGTGATCATGCTTGACAATTTTGCC
CCTCCTCAACTGAAAGAAACGGCTGCACTCGTGAAAAGCCAGTACCCGCA
CGTAGTGATAGAAGCCTCGGGAGGGATCACCACGGAGACCCTGGAGGAAT
ATTTTTCCCCTCATGTGGATGTGATCAGTCGCGGGAGCCTGACCCAGGGC
TATCCGGCTTTGGATTTCTCCTTGAAAATTGTGCCGCTGGGTAcgcgatg
aATGCAGGGCAATATAGCACAAGCACTCCCGCCCTGGCAAGTGACGCGCG
CTGTCCTTGGCTggttggaagaagacgtaCCTAGCATGGATATCGGTGGC
CTTGTTGTGGGTGAAACGCCTACGACCGCGCTCCTCTACGGAAAATCCAA
AGGGATCCTTTGTGGAAAAGTTTTTTTTGACGCGGTCTTTAAAGCGTTGG
ATTGCACGGTGGAGTGGatggaaggaatggaagatGGAGCGGTGTTGTCT
CCTCCTGTACCCAGTAAAGCAACCACATATCCCAACCAGGGAAAGCAAGA
CGAGACTGACAGAGAGCAGTCTATAAAGGTCCACGTGGCAACAGTCAAAG
GCAAAGCACGCCATATTTTGCTTGGAGAACGCACGGCCTTGAATATTTTG
ACTAGGGCAAGTGGGATCGCCACCATCTCCCGGGCCTCGGTGGACATTGG
GCGTCGCGCAGGGTGGCATGGGACCATTGCGGGCACCCGCAAGACCACTC
CCGGCTTTCGAATGGTGGAAAAATACGCCCTCTTGGTCGGAGGGGCGGCC
ACACACCGGCAGGATTTGTCGCAGATGGTCATGCTCAAGGACAATCACGT
gtggagcacggggagcATCACCAAGGCCGTGAAAGCGGCGCGAGGGGTGg
gttccttttccatcaaaATAGAGGTCGAGTGCCAGACCTTGTCGCAAGcg
caggaagcgggggcCGCAGGGGCGGACGTGATCATGCTTGACAATTTTGC
CCCTCCTCAACTGAAAGAAACGGCTGCACTCGTGAAAAGCCAGTACCCGC
ACGTAGTGATAGAAGCCTCGGGAGGGATCACCACGGAGACCCTGGAGGAA
TATTTTTCCCCTCATGTGGATGTGATCAGTCGCGGGAGCCTGACCCAGGG
CTATCCGGCTTTGGATTTCTCCTTGAAAATTGTGCCGCTGGGTAcgcgat
ga
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Synonyms
Publications