rna63, rna63 (mRNA) Nannochloropsis gaditana

Overview
Namerna63
Unique Namerna63
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length806
Alignment locationCM002455.1:181791..182164 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g7.1882.mrna
Orig protein idgnl|cribi|Naga_100129g7.1882
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:181791..182164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100129g7gene62Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna63rna63-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30604.1cds63Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna63 ID=rna63|Name=rna63|organism=Nannochloropsis gaditana|type=mRNA|length=806bp
AAATTCTTTCTGCTGTTCAATTTGATAACATTGCCTCCTTGACCATATTT
CCGTGGACAAATGTTGAAATCCAATTTTTATTGCTGTAAGAACGTCATAT
TTTAGACCGTACATCAATAGGAATCTGGCGCACTCCTGCAAATCAACAAC
CGTTCATTTCCCCAGAAGCCCTCATGCAAATGTAAATTTTTTTATGGAGG
AATCCCCAAACGTTCATTACCCTTCATATTTTCCAAACAAAGAAGATAAA
TCCATCTCGTCGGCCAGTACGGGCACGGGAAAAGGGTGGGGAGAGAAAGA
GAGAGATTCCGCCCTGCTTTCCCTCCCTTCACCTGTAATATGGGAGGGAG
AAGCCTCTGGCTCCTGCTTGATCGCATGTTTCATTTCTCCTTCGCACTCA
CAGATAGAAGCAGGCGGACTTCTGCCGACCTGCGATGGTACTGAAGGAGC
TGTGGAGTCCCGGGGGGATGTTGAGCAAGACGCCTCAGTTGCGGTTCCAA
GTTCGTTGGCCAGTCTCCCGCCCCCGTCTTTCTGCTCCCCTGCCGTTTCC
GTGCTAAAAGAAAGGGCCGATTTCTTGGGCTTGACCCAAAGAGGTAAGCC
GAATAGATGTGCGATATGTTCAAGGTTTTGTTGAAGCAAGTAGCCCCGAA
GGGTGGCACCGATTTCATCCCCCACAATGGCACTGAAATGTGGGTAAGAC
ACCAAAGATAAGGAGGGTCGGAGGGACGAAGTGGAAGACGATGACCCACT
GTCCGCTTCCGTAGAGGAGATGGCGACGACAGAATCAACCAAATTCCTCT
CCTGTG
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protein sequence of rna63

>rna63-protein ID=rna63-protein|Name=rna63|organism=Nannochloropsis gaditana|type=polypeptide|length=90bp
MLNVYRARGMSLILTQTVEQVILFVGRSLDRDAMALISLLALKSFWFLIM
SATCSPVSYQNLRRQTTQITGSLHPLHAILPRSSNFGVDN
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mRNA from alignment at CM002455.1:181791..182164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna63 ID=rna63|Name=rna63|organism=Nannochloropsis gaditana|type=mRNA|length=374bp|location=Sequence derived from alignment at CM002455.1:181791..182164+ (Nannochloropsis gaditana)
ATGCTAAATGTGTATAGGGCGCGCGGAATGTCCTTGATTCTAACCCAAAC
CGTGGAGCAGGTCATTTTGTTTGTCGGTCGCTCCCTCGACAGAGACGCCA
TGGCACTCATCTCCTTGCTCGCGTTGTCTAGCATCTGAGCAAGGCGTATA
AAAATTTACACGATAATAATACGTCCGCTGCTAAGTGAGCCCTCATACTT
CTTGACTTATGTTATGATCTACAAAGGAAAAGCTTTTGGTTCTTAATCAT
GTCCGCCACTTGTTCTCCTGTAAGCTATCAAAATTTGCGCAGACAAACCA
CTCAAATCACGGGGTCATTGCACCCCTTGCACGCGATACTCCCTCGCTCA
AGCAATTTTGGGGTAGATAACTAG
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Coding sequence (CDS) from alignment at CM002455.1:181791..182164+

>rna63 ID=rna63|Name=rna63|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002455.1:181791..182164+ (Nannochloropsis gaditana)
ATGCTAAATGTGTATAGGGCGCGCGGAATGTCCTTGATTCTAACCCAAAC
CGTGGAGCAGGTCATTTTGTTTGTCGGTCGCTCCCTCGACAGAGACGCCA
TGGCACTCATCTCCTTGCTCGCGTTGAAAAGCTTTTGGTTCTTAATCATG
TCCGCCACTTGTTCTCCTGTAAGCTATCAAAATTTGCGCAGACAAACCAC
TCAAATCACGGGGTCATTGCACCCCTTGCACGCGATACTCCCTCGCTCAA
GCAATTTTGGGGTAGATAACTAGATGCTAAATGTGTATAGGGCGCGCGGA
ATGTCCTTGATTCTAACCCAAACCGTGGAGCAGGTCATTTTGTTTGTCGG
TCGCTCCCTCGACAGAGACGCCATGGCACTCATCTCCTTGCTCGCGTTGA
AAAGCTTTTGGTTCTTAATCATGTCCGCCACTTGTTCTCCTGTAAGCTAT
CAAAATTTGCGCAGACAAACCACTCAAATCACGGGGTCATTGCACCCCTT
GCACGCGATACTCCCTCGCTCAAGCAATTTTGGGGTAGATAACTAG
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Synonyms
Publications