rna6296, rna6296 (mRNA) Nannochloropsis gaditana

Overview
Namerna6296
Unique Namerna6296
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length678
Alignment locationCM002468.1:198088..199417 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g2.8474.mrna
Orig protein idgnl|cribi|Naga_100283g2.8474
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:198088..199417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100283g2gene6089Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6296rna6296-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24392.1cds6281Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6296 ID=rna6296|Name=rna6296|organism=Nannochloropsis gaditana|type=mRNA|length=678bp
ATGTCTGAAGACAACCCTGCCACGCGCTCTCCACCCGCTTCAACCACCGC
GACCAATTGGTTCGGAAGTTTTAGTGCAGACATTGGCAGAGCCTTTGAGA
CAGCCCGGGATCAAGTCGTGAAGGCAGCAGATGAAGCCTCTCCTGCATTT
ACCTCCGCCATGGACGCTGTGAAACTGCGTGCTGTAAAATTAAAAGAGGA
GGCTGTTCAAGCTGCTCAGGCCCTCCATCAGGTTGCTGAGAAAGCTGCAC
AGGAAATCAGCGCCGAAGAAGCTCGAATCAAGGCATCTTCGTCCGCAGCC
GTTCCCCCATCTTCGCTTGTAAGCTTGCTGCCTTGGGAGGCGAATGATGA
AAGTCAAGAAATCTTGACCCAGCCGTTGATGGAGCAAATTCTGGCCATTT
CTCACGACGAGGCAACCTTTGCGCCCCTGCATGCGGAAGAAGAGGAGCAG
TTTGGCCCGTTTGACCTGGAAAATTACGTCACGGTCATTACCCGGCTCCT
GAGCTTGGACCCTGCCTTGGAGAAAATGCACGCCCGACTGGGCGGACGCG
GGAGGGAGGAGAAAGAATTTTGGCAGTCGTATTTTTACCGGTGTGCCTGT
TTGCGTTCGGGGTGTGGGATGGGAGGGAATGCCCCGGGCGGGGGGGGAGG
GGGTATGAGATCAGGGGGGAGCCGGTGA
back to top

protein sequence of rna6296

>rna6296-protein ID=rna6296-protein|Name=rna6296|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQI
QEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGT
LQYVSTLSCPLVQICDA
back to top

mRNA from alignment at CM002468.1:198088..199417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6296 ID=rna6296|Name=rna6296|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp|location=Sequence derived from alignment at CM002468.1:198088..199417+ (Nannochloropsis gaditana)
CACTGTATTGCCTGTTGCCCCTTCCAAACTGGATCCTAGTCAAGCTGCTT
CAGCATTGGCTCGCTAGCGTTTGCTTCGAAACTGCAAGTAAAATTTTGCT
GCCTTCTGATCTGCGTCTTGATCGCTCCACTATTTAACGGATCGAGCGAA
GCAGAAAAATGTCAATGCAGATGAAATAATATCGCTTACAGGACATTCCG
CGCCATAGACAGATGTGCTTTCACTATGCAAAGAAAAATACGATCGGCTG
GGTTCATCATTTGCATTTTCGTCAGAGGGCCGGAAGAACAGTCTAGTGGT
ATATTTAGACGTTTTCTTCGACTTGACTCCAAGAAAGACCTAACTCTTGA
CACCCTCTTTCATACCATCCAAATTCAAGAAGCATTCCAGATACACCAAA
AAAATCAAACATGTTCCGTGCCGCCCTCTTCAAAGCCTCTCGCTCTATGC
CTATGGCTAGGTGAGTTTATATTGAGGGTGTCAAGAACACAACCTCGAAT
GAATGGAGGCAGAGCTCATAAGCATACCCCTAACCTCATGTACAAATACA
GCAATCATGCCCGGCACATTGTCCATCGGCATGCCTCTACCGGTCGCTCT
GCCTGGCTCCGGGACCCTGCAGTACGTGAGCACCTTGTCTTGTCCTTTGG
TTCAAATCTGCGACGCGTGACGGACCGCCAGTACCTGCGCTTTGCTTGGT
TTTTCAATTCCAACCATCTATCACGCGATCATTTCCTTTAATATTTGGTT
GCGAAAGATGTGGATGCCAAGCCCATAAAAGTGACGCGTCTACACGCGAT
GCTACTTTTAGCACCCATTGCCGCGTATGCAACTGAGATATGCTTTACCT
TTCTCCAAAAGTGTTCCTATTTCAACATTTTTATGTATCATTTCTCAACC
CAATGAATATCTGACGTCTCACACATCTGCAAATTTACAAAAAGGTGTAT
CCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGCTCTACCTTCAT
GGTTCacttcaccacctcctctcctgatGTTCGTATCAACAAGACAAAGC
GTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCTTGGAAACCGTT
ACCCCAGGGAAAACATTTTGCTGGTATGTGGTAAAGGGTCAACTATTTCA
AAACCGAACCTGGGGTGActaaaaagaagaaaagaataaAATTGGACAGA
AGCGTCAATGGGAGAGAAGCATGACGAGAAGAGATCCTCTCCCAGTTGAC
ACTGTAAGCAGGAATTGACAGATTttaagaagaaaaaaatgtggTGATAA
CAAATTAAGCAGAAATCAAATACGTCGCGA
back to top

Coding sequence (CDS) from alignment at CM002468.1:198088..199417+

>rna6296 ID=rna6296|Name=rna6296|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002468.1:198088..199417+ (Nannochloropsis gaditana)
ATGCAAAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAG
AGGGCCGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTG
ACTCCAAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATT
CAAGAAGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCC
CTCTTCAAAGCCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCCGGCA
CATTGTCCATCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACC
CTGCAGTACGTGAGCACCTTGTCTTGTCCTTTGGTTCAAATCTGCGACGC
GTGAATGCAAAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCG
TCAGAGGGCCGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGA
CTTGACTCCAAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCA
AATTCAAGAAGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGC
CGCCCTCTTCAAAGCCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCC
GGCACATTGTCCATCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGG
GACCCTGCAGTACGTGAGCACCTTGTCTTGTCCTTTGGTTCAAATCTGCG
ACGCGTGA
back to top
Synonyms
Publications