rna6284, rna6284 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6284
Unique Name	rna6284
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	429
Alignment location	CM002468.1:170671..171400 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101690g1.4967.mrna
Orig protein id	gnl\|cribi\|Naga_101690g1.4967
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:170671..171400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101690g1	gene6076	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6284	rna6284-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24404.1	cds6269	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:170671..171400+
coding sequence from alignment at CM002468.1:170671..171400+

mRNA sequence

>rna6284 ID=rna6284|Name=rna6284|organism=Nannochloropsis gaditana|type=mRNA|length=429bp
ATGGACGTGTACGGGTACAGAGAGGCAAGGAAGAACCGGCCAGGGCAACG
GGCGAGGAGGCCACCGAGGGGTAAAGGCCGGGCACTTGAAAACATCGCCT
CCTCCTCCAACGGCCACAGAGGGAGAGCATTTGCATCCCTCGTGGGCAGC
GAAGCAAGCCTTGAAAGCGAAGGAAGGTGGGGGGGGGATTGCGGCGTTCC
AAGGCAAGAAGATCACTTTTGGAGAGGACGACTGATATTGTACACTTGTT
GCCTGGTCTTTGCAGAAAAGAAAATGCGGGGGGAAAGCCGAAAAATACCG
ATGGCCGGCTCATACCGAAGCTGGAAAAACTGTTGCCGTTTCATTCAACT
GTCTATTCACATAGTGGCATGGTGGGAGGAAGGAAAGATTCTGGCTCTTG
CTTTGCAGGGACGTGTGCAACATAAGTAG

protein sequence of rna6284

>rna6284-protein ID=rna6284-protein|Name=rna6284|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MGRAWLMPTLEAWMLLWWSWALHLLRAMILRGVDYITGKSELERICSADP
RAPPFSMFSRFLRFLRLSPYPSPSSLLAHPTGREASASLPSLLLRYKIPT
SNVRVQENLKEVAAALSMHAI

mRNA from alignment at CM002468.1:170671..171400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6284 ID=rna6284|Name=rna6284|organism=Nannochloropsis gaditana|type=mRNA|length=730bp|location=Sequence derived from alignment at CM002468.1:170671..171400+ (Nannochloropsis gaditana)
AGCCACAGAGCAAGATGGGCCGGGCGTGGCTAATGCCTACATTGGAGGCG
TGGATGCTCCTGTGGTGGAGCTGGGCCCTCCATTTGTTGCGGGCGATGAT
CTTGCGCGGGGTGGATTATATCACAGGTACGTGCATGCGcacaagggaaa
ggaagggcccggagaggggagaagttaaaaaatgagagaggggggggagc
gggttGAACGAGGAAAGGTGGAGAAGTGAGGTGGAATGAGGGAGAAACTG
TGCGGAGAATGGGGCCTTTTCCGACCTAATATATAGACCagaggaacgga
ggggaaaagaggcgccTAATCGAGTTCCTGGTCTCCCTTGTCCCTGCCTG
CATTCAATGCGGAGGACCCACACGTTCCCATTTAGAAACCTCCCCcatcc
accaccttccccccccctccttccccatcatccccccccccttggccaCC
CCCAGGAAAAAGCGAGCTCGAACGGATCTGCTCCGCGGACCCCcgggctc
ctcctttctccatgttttcccgcttcctccgcttccttcgcctctccccc
taccccagtccttcctccctcctggcccatCCCACCGGTCGGgaagcctc
cgcctccctcccttccctcctcctccgctacAAGATTCCCACCTCCAACG
TCCGCGTGCAAGAGAACCTGAAAGAGGTGGCTGCTGCGCTTTCCATGCAT
GCGATTTGaacctctcttcccgccccctcc

Coding sequence (CDS) from alignment at CM002468.1:170671..171400+

>rna6284 ID=rna6284|Name=rna6284|organism=Nannochloropsis gaditana|type=CDS|length=732bp|location=Sequence derived from alignment at CM002468.1:170671..171400+ (Nannochloropsis gaditana)
ATGGGCCGGGCGTGGCTAATGCCTACATTGGAGGCGTGGATGCTCCTGTG
GTGGAGCTGGGCCCTCCATTTGTTGCGGGCGATGATCTTGCGCGGGGTGG
ATTATATCACAGGAAAAAGCGAGCTCGAACGGATCTGCTCCGCGGACCCC
cgggctcctcctttctccatgttttcccgcttcctccgcttccttcgcct
ctccccctaccccagtccttcctccctcctggcccatCCCACCGGTCGGg
aagcctccgcctccctcccttccctcctcctccgctacAAGATTCCCACC
TCCAACGTCCGCGTGCAAGAGAACCTGAAAGAGGTGGCTGCTGCGCTTTC
CATGCATGCGATTTGaATGGGCCGGGCGTGGCTAATGCCTACATTGGAGG
CGTGGATGCTCCTGTGGTGGAGCTGGGCCCTCCATTTGTTGCGGGCGATG
ATCTTGCGCGGGGTGGATTATATCACAGGAAAAAGCGAGCTCGAACGGAT
CTGCTCCGCGGACCCCcgggctcctcctttctccatgttttcccgcttcc
tccgcttccttcgcctctccccctaccccagtccttcctccctcctggcc
catCCCACCGGTCGGgaagcctccgcctccctcccttccctcctcctccg
ctacAAGATTCCCACCTCCAACGTCCGCGTGCAAGAGAACCTGAAAGAGG
TGGCTGCTGCGCTTTCCATGCATGCGATTTGa

Synonyms

Publications