rna6283, rna6283 (mRNA) Nannochloropsis gaditana

Overview
Namerna6283
Unique Namerna6283
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length939
Alignment locationCM002468.1:168671..169271 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101225g1.10245.mrna
Orig protein idgnl|cribi|Naga_101225g1.10245
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:168671..169271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101225g1gene6075Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6283rna6283-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24406.1cds6268Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6283 ID=rna6283|Name=rna6283|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
ATGCCTGTCCCCCACGTACCCAGAAATTCCAACTCGAGTTACCACCGGGC
CCCTCCCAGACAAACCTCCAGCGACCAACGTCCCTCCTTCTCTGACCGTC
CACCGGCTACAGTCCATCACCAATTGTCTAGGCGTATCATTACCCGAAAG
GATGACAACTACGGGGAGAGCAACCTGCGTCGGCTGGTGTTTTTGACCCT
CCACCACCCGAATTTCAGCCCCTTGGCCCGCCTTCTCTCCGCTTTAATGG
GCCTGACCATTTTCATCACCTGCCTTGGCTTCGTCCTCTCCACCATGCCC
CGATTCCAACGCCAGCCGGGGCATTGCCCCGACCCTGTGTGTCTTCCCGG
GCCGGACTCGGCGTGTCCGGAGTCTATCTGCCCCCCCACGCAGATTCCCG
CCCTTTTTTGGGTGGAAGCCGTGACTGTGGGCATCTTCACGATTGACTAC
GTCCTCCGCCTTGCCTGCGTGCACGCGGTACCGGAGCGTCTGATCAATCC
GCAGCACTATTTGCATCAAGTGGGGGGGCCTCGAGCCCTCCAGGAGCCCT
CCGGCCTGACCAAGACCCTCTCTTTCACCATCCAGTGGATGAACATCATT
GATTTGCTTTCCTTTTTGCCTTTTTATCTGGGATTGAAGCTTGACTTTGG
TGAGGAAAACTTCGTCTTCCTCCGGCTCCTGCGCGTGATGCGCGTGATTC
GAATTTTCAGACTCGGTCGTTACACAGACGGAAGCACGGTGGTGCGCGAA
ACCCTTCGAGCCAGCTCGGCGGCCGTGGGACTGATGGCTTTCTTTATGAT
CGTCCTGACGCTTTTCTTCGCCGCCATTAGCGGTCTCTCCATCCCTCCCT
CCCTCTTTTCCTCCCTCCCTCCCTCCCTCTTTTCCTCCCACCCCTTCGCC
CTCACGTTTTTCTCGGGTTCCCATCCCGTGTCTCACTGA
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protein sequence of rna6283

>rna6283-protein ID=rna6283-protein|Name=rna6283|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MDVYGYREARKNRPGQRARRPPRGKGRALENIASSSNGHRGRAFASLVGS
EASLESEGRWGGDCGVPRQEDHFWRGRLILYTCCLVFAEKKMRGESRKIP
MAGSYRSWKNCCRFIQLSIHIVAWWEEGKILALALQGRVQHK
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mRNA from alignment at CM002468.1:168671..169271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6283 ID=rna6283|Name=rna6283|organism=Nannochloropsis gaditana|type=mRNA|length=601bp|location=Sequence derived from alignment at CM002468.1:168671..169271- (Nannochloropsis gaditana)
ATGGACGTGTACGGGTACAGAGAGGCAAGGAAGAACCGGCCAGGGCAACG
GGCGAGGAGGGTGAGGTTTGAGGCGATGCAGGAGGCCCTGGCTGCGGGAG
GACGAGGGCGGGGGGGAGGGCGGGAGGGAGGGCGCGGGGGAGGGCGGGGG
ATTCGGGGGAGGGGCGGGGGGAGAAAGGGAGGGGGTGGGGGAAGGACAAG
TTTCCAAAAAGAGATTCTGCAGGGAATGGTAGCCACCGAGGGGTAAAGGC
CGGGCACTTGAAAACATCGCCTCCTCCTCCAACGGCCACAGAGGGAGAGC
ATTTGCATCCCTCGTGGGCAGCGAAGCAAGCCTTGAAAGCGAAGGAAGGT
GGGGGGGGGATTGCGGCGTTCCAAGGCAAGAAGATCACTTTTGGAGAGGA
CGACTGATATTGTACACTTGTTGCCTGGTCTTTGCAGAAAAGAAAATGCG
GGGGGAAAGCCGAAAAATACCGATGGCCGGCTCATACCGAAGCTGGAAAA
ACTGTTGCCGTTTCATTCAACTGTCTATTCACATAGTGGCATGGTGGGAG
GAAGGAAAGATTCTGGCTCTTGCTTTGCAGGGACGTGTGCAACATAAGTA
G
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Coding sequence (CDS) from alignment at CM002468.1:168671..169271-

>rna6283 ID=rna6283|Name=rna6283|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002468.1:168671..169271- (Nannochloropsis gaditana)
CCACCGAGGGGTAAAGGCCGGGCACTTGAAAACATCGCCTCCTCCTCCAA
CGGCCACAGAGGGAGAGCATTTGCATCCCTCGTGGGCAGCGAAGCAAGCC
TTGAAAGCGAAGGAAGGTGGGGGGGGGATTGCGGCGTTCCAAGGCAAGAA
GATCACTTTTGGAGAGGACGACTGATATTGTACACTTGTTGCCTGGTCTT
TGCAGAAAAGAAAATGCGGGGGGAAAGCCGAAAAATACCGATGGCCGGCT
CATACCGAAGCTGGAAAAACTGTTGCCGTTTCATTCAACTGTCTATTCAC
ATAGTGGCATGGTGGGAGGAAGGAAAGATTCTGGCTCTTGCTTTGCAGGG
ACGTGTGCAACATAAGTAGATGGACGTGTACGGGTACAGAGAGGCAAGGA
AGAACCGGCCAGGGCAACGGGCGAGGAGGCCACCGAGGGGTAAAGGCCGG
GCACTTGAAAACATCGCCTCCTCCTCCAACGGCCACAGAGGGAGAGCATT
TGCATCCCTCGTGGGCAGCGAAGCAAGCCTTGAAAGCGAAGGAAGGTGGG
GGGGGGATTGCGGCGTTCCAAGGCAAGAAGATCACTTTTGGAGAGGACGA
CTGATATTGTACACTTGTTGCCTGGTCTTTGCAGAAAAGAAAATGCGGGG
GGAAAGCCGAAAAATACCGATGGCCGGCTCATACCGAAGCTGGAAAAACT
GTTGCCGTTTCATTCAACTGTCTATTCACATAGTGGCATGGTGGGAGGAA
GGAAAGATTCTGGCTCTTGCTTTGCAGGGACGTGTGCAACATAAGTAGAT
GGACGTGTACGGGTACAGAGAGGCAAGGAAGAACCGGCCAGGGCAACGGG
CGAGGAGG
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Synonyms
Publications