rna6279, rna6279 (mRNA) Nannochloropsis gaditana

Overview
Namerna6279
Unique Namerna6279
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length835
Alignment locationCM002468.1:160926..162270 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100832g1.992.mrna
Orig protein idgnl|cribi|Naga_100832g1.992
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:160926..162270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100832g1gene6072Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24409.1cds6264Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6279rna6279-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6279 ID=rna6279|Name=rna6279|organism=Nannochloropsis gaditana|type=mRNA|length=835bp
CAATTTGGGCCTCAGCTTGCTGCCCCTCCGCCTCTTCCACCGCCTCCCTT
CGCCCCTCCCTCCCTCCCCTCCTCCCTCCCTTCCTCCTCCCCCGCATTGC
CCCAATCGCCCCCTCCCCCGTTGCTTGATTCTCCTCTTGGAGATCGGGAA
GGGGAGAGGGAAGGAGGGGGGGAGGATGGATGGGAGGACATTGTGCGGAG
GGCCGCTGGCAAGCAGCGGGAAGCCGCCGTCAAGGAGCAAAAGGAGGAGG
AGAAGAGGGAAGAAGAGCGAAGGAGGAGGAAAGAGAGGGAGGAACGGTGG
AGGAGGAGGGAGGAGGAAGAGAAGGAGGGAGGGAGGGAGGGCGGGAGCGT
GTGGTCGGCGCTGCGCGGCTTGCCCTTACCGTACGCCTTGGTGGGCGATG
AGGAGTTGGGAATGTCGGTGATGAAGATTCAGCGGGAGGGTCTTCGGTAC
GACCGTTGGGTGAGGGAGGGAGGGAAGGAGGGGGGGAGGGAGGGGGAGAG
GAGCATCCTGGACGTGTTGAGTGGAGGAGGAGAGGATTGGAGGGGGGGGG
TGAGGAGGAAGGGGGGGAGGAGGAGGAGGAAGGGATGGATTTTTGGAACG
CTTACATATCGGACGGGGAGGAGGAGGAGGAGGAAGGGGGGGAGGACGGG
GCCGAGGGCGGGAGGGAGGGCGGGGATTCCATGTACGAGGGGTTGGACGA
GGCGGGGGGTCGGGAGAAGGAAGCAGGGGAAGAGGGAGCGGTCAAGGGGG
AGGGAGGGGAGGAGGAGGATCTGTACGGAGACCTGATGGAGGAAGTGGAG
GAGAGCGAGGGGAGGAAGGAGGAAGGGGAGAAGGC
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protein sequence of rna6279

>rna6279-protein ID=rna6279-protein|Name=rna6279|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MVGGPMAFAGGGRPAGICQGPSSSAVPSPDPKPAPKLPTIRRGWMVTNFP
IDSHVVDTPLPILRPQARASRLHRETETRRVGGEERDGKGGGHDRLHCRS
GSADPGVRYQGITYI
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mRNA from alignment at CM002468.1:160926..162270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6279 ID=rna6279|Name=rna6279|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp|location=Sequence derived from alignment at CM002468.1:160926..162270- (Nannochloropsis gaditana)
AATGCACAGAACATTCAAAAGGCGTCATATTTTCAATCCTCGAACCAATG
TTATCGGAAGCTTTCTAGCTGTCCGTCCGGTACCGACACTCGCTCCTTCG
AGGGGAGGACTGTCGCCCACGCTGATGGAGAAGCTTCGTTTTGGTCCGTG
TGATGCAAGTTAAAATTGAAATGCTTCGTGTCCTTCCTAAGTGGTGTATT
CGTCCTGGCTTGCCATCAAGAGAGTTTGTTTTTTTTCCGCGAACAGAATA
GAAATGACTGGGGACAAATCAAGCATGGATTCTTCTTCATGTAGACCTCT
TAAGTAATCTTGCGGTCGTCGCATCAGTGGCAATGGTTTTGTTCCACAAA
ATGTCAACGATGTCTGTTTAAGTCCCGTGCTTCATAAGTAACTACCTCGC
CCGCACAGCAGCTCGCACTTTATTGAGAAGGCGTGCAACCGGGATAGAGC
CATGAGTGAAGACCTTCAGCAGCGGTTTGAGGAGGCAGCTAAGGTAAGTA
GAAGGTATCGTATATTTGTAGCATAAGTTTATATTCGTAGGGAAAGGGTA
TACAAGGCCATGATCGGTAACCGAGAAAAACAAAAAAAAGAGAAAAAATG
AAACACGAGTAGAGAAGAAAAGAGAACGAAGCAAAGGGGAATGACGAGGA
AAGGAGAGAGAGGAGAAGTTTGGAGGCCTCAAATCCGAGAATGGAGAGAG
GTAAAGACGTACAGCCCGAATTATGTTTGAGGACCGTTTTCAGCCCGTAT
TTTCCCGCGAAAGTTGGCCCCACGGCCTTCACTTCTCCTTTTCCTTCCAC
CCCAGCGCATTGCCGCCTGGAAACCCGCCTCAAAGGAGCCCAGCGACGAG
GAGAAACTCACTGTCTACGCCCTCTACAAACAAGCGACTGTAGGGGATTG
CAACACCCCCAAGTAAGTCATGGTGGGGGGACCGATGGCCTTCGCGGGGG
GCGGGAGGCCTGCGGGCATCTGTCAGGGGCCATCGTCATCTGCTGTGCCT
TCTCCTGACCCGAAGCCTGCTCCTAAACTTCCTACCATCCGCCGTGGATG
GATGGTCACGAACTTCCCCATCGACTCTCACGTCGTCGACACTCCCCTCC
CTATCCTGCGGCCGCAGGCCCGGGCTTCTCGACTTCACAGGGAGACGGAA
ACACGCCGCGTGGGAGGGGAAGAAAGGGATGGCAAAGGCGGCGGCCATGA
CCGCCTACATTGCCGAAGTGGATCGGCAGATCCAGGTGTACGGTACCAAG
GCATAACATATATATAAGATGATTGATGGTGGGAGGGAAATTTGCAGGCA
GTGTGGTGGAAGAAGAGGAGGAAGGGGCTGAGGCCTTTCGTGCTC
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Coding sequence (CDS) from alignment at CM002468.1:160926..162270-

>rna6279 ID=rna6279|Name=rna6279|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002468.1:160926..162270- (Nannochloropsis gaditana)
ATGGTGGGGGGACCGATGGCCTTCGCGGGGGGCGGGAGGCCTGCGGGCAT
CTGTCAGGGGCCATCGTCATCTGCTGTGCCTTCTCCTGACCCGAAGCCTG
CTCCTAAACTTCCTACCATCCGCCGTGGATGGATGGTCACGAACTTCCCC
ATCGACTCTCACGTCGTCGACACTCCCCTCCCTATCCTGCGGCCGCAGGC
CCGGGCTTCTCGACTTCACAGGGAGACGGAAACACGCCGCGTGGGAGGGG
AAGAAAGGGATGGCAAAGGCGGCGGCCATGACCGCCTACATTGCCGAAGT
GGATCGGCAGATCCAGGTGTACGGTACCAAGGCATAACATATATATAA
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Synonyms
Publications