rna6260, rna6260 (mRNA) Nannochloropsis gaditana

Overview
Namerna6260
Unique Namerna6260
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002468.1:115845..116207 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100902g4.1548.mrna
Orig protein idgnl|cribi|Naga_100902g4.1548
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:115845..116207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100902g4gene6053Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24430.1cds6245Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6260rna6260-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6260 ID=rna6260|Name=rna6260|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGGATCTCGCTGCTGTCTTCTGTTGGGGAGACCGGAGGGAAGAGCAAAA
CGGGAAAAGTTACACAGTGGCGTGCGTGCTATGGCGGAAAGGGAATAACA
CGGGCACGGCCGCCTGGCGTTTTTGCATTTTTGGTGCAGGTGATTTCTCG
ACACGTCTTGGTGGAGAAACTATGTCCGTATGGATGTCCAGAGACGGTGT
CGTGCCCGCCTTTTTCCTTTGGGCTCCTTCGCGCCCTTCTCCGGCTGCTT
GGATTATCACCCGGCACGACCCAGACATGTTTTTTTCGGTCACTTTCGTC
TCGGCAATGTGGGTTTATTGTTCACTTCGAAGCTTTCTTTTGGCGCAGGG
ATCGCCATCAATGATGCGTACCATGCGGTGTGGCATAGGGGGGTATCTAT
CTAGACGTCCATTTGTTCAAGCTACACACTGCGCTCGGTCTAAACACGAG
ATGCGACGCGATATTATTGACCAACATATCCTGAGCTGA
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protein sequence of rna6260

>rna6260-protein ID=rna6260-protein|Name=rna6260|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MGTSEVPTEGGEGKEGARRERRGQCAGGEETLNRRRGKGGSQSRYLGYCC
HVCATRRVRWVEGRGWGEGKGVRIGPKSAEEEGEWEGQWGDLKLRRGGEG
RAHGLVGRTSTASHDSACML
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mRNA from alignment at CM002468.1:115845..116207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6260 ID=rna6260|Name=rna6260|organism=Nannochloropsis gaditana|type=mRNA|length=363bp|location=Sequence derived from alignment at CM002468.1:115845..116207- (Nannochloropsis gaditana)
ATGGGGACGAGTGAGGTGCCGACGGAGGGGGGGGAGGGGAAGGAGGGAGC
AAGGAGGGAGAGAAGAGGGCAGTGTGCTGGAGGGGAGGAGACCCTGAACA
GGCGACGGGGCAAGGGAGGCAGCCAATCGAGATACCTCGGGTATTGCTGT
CATGTCTGTGCCACGAGGCGCGTGAGGTGGGTGGAGGGTAGAGGGTGGGG
CGAAGGAAAGGGTGTGCGGATAGGGCCCAAAAGTGCCGAGGAGGAGGGAG
AGTGGGAGGGGCAGTGGGGAGACTTGAAGTTGAGAAGGGGAGGGGAAGGG
CGAGCACATGGTCTAGTGGGTAGGACTTCGACCGCAAGTCACGACAGTGC
TTGCATGCTCTGA
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Coding sequence (CDS) from alignment at CM002468.1:115845..116207-

>rna6260 ID=rna6260|Name=rna6260|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at CM002468.1:115845..116207- (Nannochloropsis gaditana)
ATGGGGACGAGTGAGGTGCCGACGGAGGGGGGGGAGGGGAAGGAGGGAGC
AAGGAGGGAGAGAAGAGGGCAGTGTGCTGGAGGGGAGGAGACCCTGAACA
GGCGACGGGGCAAGGGAGGCAGCCAATCGAGATACCTCGGGTATTGCTGT
CATGTCTGTGCCACGAGGCGCGTGAGGTGGGTGGAGGGTAGAGGGTGGGG
CGAAGGAAAGGGTGTGCGGATAGGGCCCAAAAGTGCCGAGGAGGAGGGAG
AGTGGGAGGGGCAGTGGGGAGACTTGAAGTTGAGAAGGGGAGGGGAAGGG
CGAGCACATGGTCTAGTGGGTAGGACTTCGACCGCAAGTCACGACAGTGC
TTGCATGCTCTGA
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Synonyms
Publications