rna6259, rna6259 (mRNA) Nannochloropsis gaditana

Overview
Namerna6259
Unique Namerna6259
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1233
Alignment locationCM002468.1:114874..115419 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100902g3.1547.mrna
Orig protein idgnl|cribi|Naga_100902g3.1547
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:114874..115419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100902g3gene6052Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6259rna6259-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24429.1cds6244Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6259 ID=rna6259|Name=rna6259|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGGGGCCTCGACTGGGTCAT
CCGTCTCCTGGCGCACTCCCGCCGGTACCTCCAGACCCTCGACCTCTTTG
AGGTGCTGAGCAGCAAGGGGGTTGTGCTGCGGGCATCTTCCTTCAACGTG
GTGATGGAGGAGCTGGCGGCCATCCCCAAGTGGCGGGAGGTGATCAAGGT
AATCCCGTCCTTCCTCCCGCCCTCCCTCCCTTCTTACCTTAAAAAGCATG
CGCCCCCCTCCCTTCGTCCTTGTCTCACGCGACTTTTCCTTTCTTCTCCT
CACACAAGTGGAGAACAACCCTCACCTTCCCTTCCTCCCTCCCTCCCTCC
CTCCCCCCCTTCCTCCCTCCCTCCCCCCCCCCTCCCACGGTCCGGGCCTT
GATGAAGGCATACCGTGTGTCTGCCGACTCGGACAGCTACTGTTGGTTTA
TCACAGCCTATCTGGCACTGGGGCGCACCTACGATGCCACGCGACTCTTG
GCTGAGATGGGGGATCGGGGGCTCGCGCCATCGGAGCGTATGTTTGCCAT
GTGGACATCCATGGCGGCAGTGACCTCGGCAGAGAGGCGAGCAGCAGCGG
CGGTAGGAGGAATCGCCTCTCCCGGTGCGGCGGCAGCGGGTTTGGTGGAG
GGCATGGAGGAGAGGGAGGTGGGGGAAGGGGAGATGGGGGGGGAGGAGGG
CCCGTCCATGTCGTTGGCGTGAGGTGGCGCACGGGCAGGATGGGAAGGAG
GAAGAGGGGGGTGCGAGCACAGGGATGACGGGACGCCTGGCGGTAGTCGG
GACTCTAGACACGGGGTGTATGTAACGATTCTAGCAATCAGTAGAGGTCT
TGGGGAGGGTTCACAGCGATCTGGTATAGGGCAAGATGGTTGAAAGGCAT
TCGCAGGGAGGGGTCTGCATATGAGGGATAGGTGAAGACGTCGAGGCAAA
CAGCGCGGGATTAAAGCAGGCATAAACTGGAGAGAACGGGCGAAGGGGTG
GGGAGAGGCTCGACCATAGGAACGGACGAGTCATGGAAATGGTGTGAAGG
AGCGTAAATGAAAATGTGACAAAGTCGTTTGAGAACGGCTGCGCCTTGTG
GCAGCGTTGAGCTGTTGCAGGATGAAGATGACGATAACATTAACGAATGA
AGGAATGGCACGATTTTGGAAGAGTCTGAAAGGTGGCACTCTCATCGTGT
GTCCTCACTTCTTTGCATCTTCGTCTTCATTCT
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protein sequence of rna6259

>rna6259-protein ID=rna6259-protein|Name=rna6259|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MDLAAVFCWGDRREEQNGKSYTVACVLWRKGNNTGTAAWRFCIFGAGDFS
TRLGGETMSVWMSRDGVVPAFFLWAPSRPSPAAWIITRHDPDMFFSVTFV
SAMWVYCSLRSFLLAQGSPSMMRTMRCGIGGYLSRRPFVQATHCARSKHE
MRRDIIDQHILS
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mRNA from alignment at CM002468.1:114874..115419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6259 ID=rna6259|Name=rna6259|organism=Nannochloropsis gaditana|type=mRNA|length=546bp|location=Sequence derived from alignment at CM002468.1:114874..115419- (Nannochloropsis gaditana)
ATGGATCTCGCTGCTGTCTTCTGTTGGGGAGACCGGAGGGAAGAGCAAAA
CGGGAAAAGTTACACAGTGGCGTGCGTGCTATGGCGGAAAGGGAATAACA
CGGGCACGGCCGCCTGGCGTTTTTGCATTTTTGGTGCAGGTGATTTCTCG
ACACGTCTTGGTGGAGAAACTATGTCCGTATGGATGTCCAGAGACGGTGT
CGTGCCCGCCTTTTTCCTTTGGGGTCTTGGCAGCCTCCTCCTTCCTGTTT
TCGGCTACGCCTATTGATGCACGTTCTTAGCTCCTTCGCGCCCTTCTCCG
GCTGCTTGGATTATCACCCGGCACGACCCAGACATGTTTTTTTCGGTCAC
TTTCGTCTCGGCAATGTGGGTTTATTGTTCACTTCGAAGCTTTCTTTTGG
CGCAGGGATCGCCATCAATGATGCGTACCATGCGGTGTGGCATAGGGGGG
TATCTATCTAGACGTCCATTTGTTCAAGCTACACACTGCGCTCGGTCTAA
ACACGAGATGCGACGCGATATTATTGACCAACATATCCTGAGCTGA
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Coding sequence (CDS) from alignment at CM002468.1:114874..115419-

>rna6259 ID=rna6259|Name=rna6259|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002468.1:114874..115419- (Nannochloropsis gaditana)
CTCCTTCGCGCCCTTCTCCGGCTGCTTGGATTATCACCCGGCACGACCCA
GACATGTTTTTTTCGGTCACTTTCGTCTCGGCAATGTGGGTTTATTGTTC
ACTTCGAAGCTTTCTTTTGGCGCAGGGATCGCCATCAATGATGCGTACCA
TGCGGTGTGGCATAGGGGGGTATCTATCTAGACGTCCATTTGTTCAAGCT
ACACACTGCGCTCGGTCTAAACACGAGATGCGACGCGATATTATTGACCA
ACATATCCTGAGCTGAATGGATCTCGCTGCTGTCTTCTGTTGGGGAGACC
GGAGGGAAGAGCAAAACGGGAAAAGTTACACAGTGGCGTGCGTGCTATGG
CGGAAAGGGAATAACACGGGCACGGCCGCCTGGCGTTTTTGCATTTTTGG
TGCAGGTGATTTCTCGACACGTCTTGGTGGAGAAACTATGTCCGTATGGA
TGTCCAGAGACGGTGTCGTGCCCGCCTTTTTCCTTTGGGCTCCTTCGCGC
CCTTCTCCGGCTGCTTGGATTATCACCCGGCACGACCCAGACATGTTTTT
TTCGGTCACTTTCGTCTCGGCAATGTGGGTTTATTGTTCACTTCGAAGCT
TTCTTTTGGCGCAGGGATCGCCATCAATGATGCGTACCATGCGGTGTGGC
ATAGGGGGGTATCTATCTAGACGTCCATTTGTTCAAGCTACACACTGCGC
TCGGTCTAAACACGAGATGCGACGCGATATTATTGACCAACATATCCTGA
GCTGAATGGATCTCGCTGCTGTCTTCTGTTGGGGAGACCGGAGGGAAGAG
CAAAACGGGAAAAGTTACACAGTGGCGTGCGTGCTATGGCGGAAAGGGAA
TAACACGGGCACGGCCGCCTGGCGTTTTTGCATTTTTGGTGCAGGTGATT
TCTCGACACGTCTTGGTGGAGAAACTATGTCCGTATGGATGTCCAGAGAC
GGTGTCGTGCCCGCCTTTTTCCTTTGGG
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Synonyms
Publications