rna6254, rna6254 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6254
Unique Name	rna6254
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1025
Alignment location	CM002468.1:97493..100548 -

Link to JBrowse

Properties


Property Name	Value
Product	putative tyrosinase-like protein in chromosome
Orig transcript id	gnl\|cribi\|Naga_100481g2.5251.mrna
Orig protein id	gnl\|cribi\|Naga_100481g2.5251
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:97493..100548 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100481g2	gene6047	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24434.1	cds6239	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6254	rna6254-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:97493..100548-
coding sequence from alignment at CM002468.1:97493..100548-

mRNA sequence

>rna6254 ID=rna6254|Name=rna6254|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp
TCCCTCCCTCCCTCCCTCACTTCGCCCCTCCTCCCTCCCACGCCCCCCCT
CCTCCCGCCCCCTGGAGGCCCGCGTCGGTTTCTACGTCCAGCCAGCCATG
CCCTCCCACATCAACCACGACGGCCTCCCCCAGGCGGAAAAACTCTGGCG
ATTGGCGGGTGGAGACGAAGAGCGGTACCCCGAGCATGGATCCTTCATCC
GCCTCGGATTCAACACCGACGACGTCAGGGCCGTGGGGCGCTTCCTCCAG
TCCCTCCGGGGATAGGACATTCCCTTCCTCCCTCCCTTCCTCCCTCCCTC
CTCCCCTCCCTCCCTCTCTCCATCCCTGCCTCCCGTCTTTTTTTGCATGT
GTTGGGCGGTCTGTGGTGGGGATTCCGTGCCGTTGCTGTATCATCGTCAT
CCATCTCTGAAAATTTTTACATGTCGGTGAGCCTTTTAGGTTTCTGTTGT
CACTTGTGGACCCGAGTGGCCTTAAAATGCACTTGCCCCCATATTGGGGA
ACGACGCGATTGTCGAGGAATCAAACGGGAGGGGAAGGAAGAGGGCAAAG
CCATGTCGGGCATGATACAAACATGAGGTTTACATGCTCACTGCCTGCCT
CGAACATTAGCTTGTAAGGATGTAGGAGAGTACGTGGAACCGGTGAATGT
AACTGGTGTAACATTGTAATCAAAAGAAAGGTACGCACGGACTCGAGAGG
GTGGGTATCGTGGGTTTTGTCAAACAATATCAGCACAGTAGGCTGTGTGC
ATGTTTGGTATGCATGCATGCAATCCCTTTAAAGGAATAGGAGGCTTTAT
CAAGCGTACAGAGCAAATGCATTTTCGCGGCGCGAATTAAGAAAAAAGGT
GCATTCGAGGGAAGGGAAAGACGTAAAGGACGCCAGTGTCTTAATACCTG
TAATATAGGACTCCCGAGCAACCAACTTGTTTCCCGGCCAGACGAGAATC
AAAAAGCATGTAGAATACATTATATCATGAGGATACCGAGCAATGAGGAT
AAAGAGATCATATAGCAAAACTTGC

protein sequence of rna6254

>rna6254-protein ID=rna6254-protein|Name=rna6254|organism=Nannochloropsis gaditana|type=polypeptide|length=983bp
MGEAYGDDKSDDLGISGVTDGEVDDSEAFLLEKSAWAGPSPSSKKPNDDK
LLTPARTSPPDQASVQPYSSCWHRLTPYYALVTLGALYLGARSYIHSQHN
SSPPDAIMNISFNSSSLRSKSSFYTQVLDPNKNIHPPVKVIETSRVPEVP
SSSYHNLSLTPTSKAADMPPFPSSALSNSTKILLRDGRNASGTQPKSMSS
SSSMPSVPPGASPSNFITSSTSHASIISPSGSEPTHDLAQTPLHIQAYSA
DYGAIAEETLQLYGWDMIIEAKRPTTLRVLNPLHTLDSSPLSSPPTRRTS
SSRYHEFGDMTYDFEVQEEGGNVVFSRRGVGRLVHDVTCTQAGSTLTVQV
TERPSLRSYRTFSAVCKEVRREMRTLTRDDRQTYLESLDIFYRIPLADGR
ARYGPRFANNALLTAAHSSEIWCLHDPNQFMAVHSAFMHWAEQNMKRISA
VESGEKGEADRKRQPVVLNETAPLRSVGEKSAHVPHLALGAIPYWDFHID
TQTLGSTWWWGNPFFQADDNEGFGPIGTSPTTGHVVEGSGRFARMPMVRA
EDLPEDVMRAYDPGVDAYGFVTSKSFTLNSSPFVTRSETVCDLPMALPMA
PAQNLFDCYDSFNTWKEATSCLYMQVHLQLHSHFGGGAWHCGVNLKEFQK
SFPQYSSELLSFLGVSGRAQGLRGFRECDREAGRCHCPGLDSENMPYYKL
YRLLASDLRQVRRAWPGEFFLAPYRGTEELRFLKNDGNFHDWEDQDRLLR
MVARLWCETAVNGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFMERG
FNRTWSKAEGGGEGLQEKGEVKHRQREADDADWERDFEGRGEIEDDVMAR
NRQVRYRRGRLRRRVEAGDRETSSARGATQQVEQRDVPEDWDSPKESIAS
DGEMRECLGGRYTDPSPFTPYLMAAADEDEEERVAKEQDLYPGRHYSMKE
IDELMHPLHPSLPYVYDDLVHWGGKQWDPSRTE

mRNA from alignment at CM002468.1:97493..100548-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6254 ID=rna6254|Name=rna6254|organism=Nannochloropsis gaditana|type=mRNA|length=3056bp|location=Sequence derived from alignment at CM002468.1:97493..100548- (Nannochloropsis gaditana)
ATGGGAGAAGCTTATGGTGACGATAAAAGTGATGACCTTGGAATAAGTGG
TGTGACGGATGGAGAAGTAGATGACAGCGAGGCCTTTTTATTGGAAAAAT
CGGCCTGGGCAGGCCCGTCGCCCTCGTCGAAAAAACCCAATGACGATAAA
TTGCTTACTCCAGCACGAACATCTCCTCCAGATCAAGCAAGTGTGCAACC
CTATTCTAGTTGTTGGCATCGTCTCACTCCTTATTACGCCCTAGTAACAC
TCGGAGCTTTATACCTTGGTGCCCGGTCGTACATACATTCTCAGCACAAC
TCGAGTCCGCCTGATGCCATCATGAATATTTCATTCAACAGTTCCTCGCT
GAGAAGTAAGTCATCATTTTACACCCAAGTGCTCGATCCAAATAAAAACA
TTCACCCGCCGGTCAAGGTAATTGAGACCTCCCGCGTACCTGAAGTGCCA
TCTAGCAGTTATCACAACCTGTCGCTTACTCCAACTTCCAAAGCCGCTGA
CATGCCACCCTTTCCCTCATCAGCTCTCTCCAATTCGACTAAAATTTTAC
TACGTGATGGTCGAAATGCATCTGGTACCCAGCCAAAATCGATGTCGTCC
TCCTCTTCCATGCCTTCCGTTCCTCCAGGCGCCTCTCCCTCCAACTTCAT
AACATCCTCGACTTCTCATGCCTCTATCATCTCACCTTCGGGTTCGGAAC
CCACCCACGACTTGGCCCAAACTCCTTTACATATTCAAGCTTACAGTGCT
GACTACGGAGCAATAGCTGAAGAGACTCTGCAGCTTTATGGCTGGGATAT
GATCATTGAGGCAAAACGTCCTACGACCCTGCGTGTCCTGAACCCTCTCC
ACACACTAGATTCAAGTCCACTGTCAAGTCCTCCCACCCGTCGCACCTCC
TCCAGTAGGTATCATGAATTTGGAGATATGACGTACGATTTCGAGGTTCA
AGAGGAGGGTGGTAACGTGGTGTTCTCTCGCCGTGGCGTCGGCCGCCTGG
TTCACGATGTCACCTGCACCCAGGCCGGAAGCACGCTCACCGTCCAGGTT
ACCGAGCGCCCTTCCCTCCGAAGCTACCGGACTTTCTCTGCCGTTTGTAA
GGAGGTGCGGCGCGAAATGCGGACATTGACGCGGGACGATCGTCAGACGT
ACCTGGAGAGCCTTGACATCTTTTACCGAATACCTCTAGCAGACGGTCGG
GCGCGTTACGGGCCTCGATTCGCAAACAATGCGCTTTTGACCGCTGCGCA
CAGCAGTGAAATATGGTGCTTGCATGATCCCAACCAGTTTATGGCTGTCC
ACTCTGCTTTTATGCACTGGGCGGAGCAGAACATGAAGCGGATCAGTGCC
GTGGAGAGTGGGGAAAAAGGCGAAGCCGACAGAAAGAGGCAACCGGTTGT
GCTCAATGAGACCGCTCCATTACGTTCGGTCGGAGAAAAATCAGCACATG
TCCCTCACCTTGCCTTGGGCGCTATCCCCTACTGGGATTTCCACATTGAC
ACCCAGACGCTTGGTTCCACCTGGTGGTGGGGCAACCCGTTCTTTCAAGC
CGACGACAACGAAGGGTTCGGGCCCATAGGGACCAGTCCCACCACTGGTC
ATGTCGTGGAGGGAAGCGGTCGCTTTGCCCGGATGCCGATGGTGCGAGCG
GAAGATCTGCCGGAAGACGTGATGCGGGCGTACGATCCCGGTGTGGATGC
TTATGGATTTGTCACGTCCAAATCTTTTACTTTGAACTCCAGCCCTTTTG
TCACCCGCAGTGAGACTGTGTGCGACTTGCCCATGGCCCTGCCAATGGCA
CCGGCGCAGAACCTCTTTGACTGCTACGACAGCTTTAATACGTGGAAGGA
AGCCACCTCCTGCCTGTACATGCAGGTACATCTGCAGCTACACTCGCACT
TTGGAGGCGGTGCTTGGCATTGTGGGGTCAACCTGAAGGAATTTCAAAAG
TCGTTTCCCCAATACTCTTCCGAGCTCCTCTCTTTTTTAGGCGTTTCAGG
TCGTGCTCAAGGCTTGAGAGGGTTCCGGGAATGCGATAGGGAAGCTGGTC
GCTGCCATTGTCCCGGACTGGACTCGGAGAACATGCCATATTACAAATTG
TACCGGCTTCTCGCCAGCGATTTGCGCCAAGTCAGGCGAGCTTGGCCTGG
AGAATTCTTCTTGGCACCCTACCGAGGGACAGAAGAGCTCCGGTTTTTGA
AAAACGACGGAAATTTTCACGACTGGGAAGACCAAGACCGCTTACTGCGG
ATGGTGGCACGTTTATGGTGCGAAACAGCCGTGAACGGACATTTTGTCTC
CATGGCCTCCATCAACGACCCAGTCTTTTATGCTGCACATGTATATTTCG
ACCGCCTTTCTCATTTCTTGGCCTTGTCACCGGCCTTTATGGAGCGCGGT
TTCAATCGAACTTGGAGTAAAGCGGAAGGCGGCGGAGAGGGGTTGCAAGA
GAAGGGAGAGGTAAAACATCGACAAAGGGAAGCAGACGATGCTGACTGGG
AAAGAGATTTTGAAGGGAGAGGAGAAATCGAAGACGATGTCATGGCAAGG
AATCGACAAGTGAGATATAGACGCGGACGGTTGAGGAGACGGGTGGAAGC
AGGGGATCGGGAGACTTCGAGCGCCCGAGGAGCAACCCAGCAAGTCGAAC
AAAGAGATGTACCGGAGGATTGGGATTCCCCCAAAGAGAGCATTGCGTCT
GACGGCGAAATGCGCGAATGTCTTGGCGGTCGATACACGGACCCTTCGCC
GTTCACGCCGTATCTGATGGCAGCCGCCGATGAGGACGAGGAAGAGAGGG
TTGCCAAAGAGCAAGATCTATACCCAGGGCGGCACTACAGCATGAAAGAA
ATAGACGAGCTCATGCACCCGCTCCACCCGTCCCTTCCCTATGTCTATGA
TGACCTCGTACATTGGGGAGGGAAGCAATGGGACCCGAGTAGGACTGAGT
AGCAAAATTTCAGCGCGTGAGATATTGTATTGTAAGAATGAAAGACCATA
AGCATCAAGGGCGATGTGTAAAATAAAAGCAAAGGATTAATAAGATGTAA
ACAACG

Coding sequence (CDS) from alignment at CM002468.1:97493..100548-

>rna6254 ID=rna6254|Name=rna6254|organism=Nannochloropsis gaditana|type=CDS|length=2952bp|location=Sequence derived from alignment at CM002468.1:97493..100548- (Nannochloropsis gaditana)
ATGGGAGAAGCTTATGGTGACGATAAAAGTGATGACCTTGGAATAAGTGG
TGTGACGGATGGAGAAGTAGATGACAGCGAGGCCTTTTTATTGGAAAAAT
CGGCCTGGGCAGGCCCGTCGCCCTCGTCGAAAAAACCCAATGACGATAAA
TTGCTTACTCCAGCACGAACATCTCCTCCAGATCAAGCAAGTGTGCAACC
CTATTCTAGTTGTTGGCATCGTCTCACTCCTTATTACGCCCTAGTAACAC
TCGGAGCTTTATACCTTGGTGCCCGGTCGTACATACATTCTCAGCACAAC
TCGAGTCCGCCTGATGCCATCATGAATATTTCATTCAACAGTTCCTCGCT
GAGAAGTAAGTCATCATTTTACACCCAAGTGCTCGATCCAAATAAAAACA
TTCACCCGCCGGTCAAGGTAATTGAGACCTCCCGCGTACCTGAAGTGCCA
TCTAGCAGTTATCACAACCTGTCGCTTACTCCAACTTCCAAAGCCGCTGA
CATGCCACCCTTTCCCTCATCAGCTCTCTCCAATTCGACTAAAATTTTAC
TACGTGATGGTCGAAATGCATCTGGTACCCAGCCAAAATCGATGTCGTCC
TCCTCTTCCATGCCTTCCGTTCCTCCAGGCGCCTCTCCCTCCAACTTCAT
AACATCCTCGACTTCTCATGCCTCTATCATCTCACCTTCGGGTTCGGAAC
CCACCCACGACTTGGCCCAAACTCCTTTACATATTCAAGCTTACAGTGCT
GACTACGGAGCAATAGCTGAAGAGACTCTGCAGCTTTATGGCTGGGATAT
GATCATTGAGGCAAAACGTCCTACGACCCTGCGTGTCCTGAACCCTCTCC
ACACACTAGATTCAAGTCCACTGTCAAGTCCTCCCACCCGTCGCACCTCC
TCCAGTAGGTATCATGAATTTGGAGATATGACGTACGATTTCGAGGTTCA
AGAGGAGGGTGGTAACGTGGTGTTCTCTCGCCGTGGCGTCGGCCGCCTGG
TTCACGATGTCACCTGCACCCAGGCCGGAAGCACGCTCACCGTCCAGGTT
ACCGAGCGCCCTTCCCTCCGAAGCTACCGGACTTTCTCTGCCGTTTGTAA
GGAGGTGCGGCGCGAAATGCGGACATTGACGCGGGACGATCGTCAGACGT
ACCTGGAGAGCCTTGACATCTTTTACCGAATACCTCTAGCAGACGGTCGG
GCGCGTTACGGGCCTCGATTCGCAAACAATGCGCTTTTGACCGCTGCGCA
CAGCAGTGAAATATGGTGCTTGCATGATCCCAACCAGTTTATGGCTGTCC
ACTCTGCTTTTATGCACTGGGCGGAGCAGAACATGAAGCGGATCAGTGCC
GTGGAGAGTGGGGAAAAAGGCGAAGCCGACAGAAAGAGGCAACCGGTTGT
GCTCAATGAGACCGCTCCATTACGTTCGGTCGGAGAAAAATCAGCACATG
TCCCTCACCTTGCCTTGGGCGCTATCCCCTACTGGGATTTCCACATTGAC
ACCCAGACGCTTGGTTCCACCTGGTGGTGGGGCAACCCGTTCTTTCAAGC
CGACGACAACGAAGGGTTCGGGCCCATAGGGACCAGTCCCACCACTGGTC
ATGTCGTGGAGGGAAGCGGTCGCTTTGCCCGGATGCCGATGGTGCGAGCG
GAAGATCTGCCGGAAGACGTGATGCGGGCGTACGATCCCGGTGTGGATGC
TTATGGATTTGTCACGTCCAAATCTTTTACTTTGAACTCCAGCCCTTTTG
TCACCCGCAGTGAGACTGTGTGCGACTTGCCCATGGCCCTGCCAATGGCA
CCGGCGCAGAACCTCTTTGACTGCTACGACAGCTTTAATACGTGGAAGGA
AGCCACCTCCTGCCTGTACATGCAGGTACATCTGCAGCTACACTCGCACT
TTGGAGGCGGTGCTTGGCATTGTGGGGTCAACCTGAAGGAATTTCAAAAG
TCGTTTCCCCAATACTCTTCCGAGCTCCTCTCTTTTTTAGGCGTTTCAGG
TCGTGCTCAAGGCTTGAGAGGGTTCCGGGAATGCGATAGGGAAGCTGGTC
GCTGCCATTGTCCCGGACTGGACTCGGAGAACATGCCATATTACAAATTG
TACCGGCTTCTCGCCAGCGATTTGCGCCAAGTCAGGCGAGCTTGGCCTGG
AGAATTCTTCTTGGCACCCTACCGAGGGACAGAAGAGCTCCGGTTTTTGA
AAAACGACGGAAATTTTCACGACTGGGAAGACCAAGACCGCTTACTGCGG
ATGGTGGCACGTTTATGGTGCGAAACAGCCGTGAACGGACATTTTGTCTC
CATGGCCTCCATCAACGACCCAGTCTTTTATGCTGCACATGTATATTTCG
ACCGCCTTTCTCATTTCTTGGCCTTGTCACCGGCCTTTATGGAGCGCGGT
TTCAATCGAACTTGGAGTAAAGCGGAAGGCGGCGGAGAGGGGTTGCAAGA
GAAGGGAGAGGTAAAACATCGACAAAGGGAAGCAGACGATGCTGACTGGG
AAAGAGATTTTGAAGGGAGAGGAGAAATCGAAGACGATGTCATGGCAAGG
AATCGACAAGTGAGATATAGACGCGGACGGTTGAGGAGACGGGTGGAAGC
AGGGGATCGGGAGACTTCGAGCGCCCGAGGAGCAACCCAGCAAGTCGAAC
AAAGAGATGTACCGGAGGATTGGGATTCCCCCAAAGAGAGCATTGCGTCT
GACGGCGAAATGCGCGAATGTCTTGGCGGTCGATACACGGACCCTTCGCC
GTTCACGCCGTATCTGATGGCAGCCGCCGATGAGGACGAGGAAGAGAGGG
TTGCCAAAGAGCAAGATCTATACCCAGGGCGGCACTACAGCATGAAAGAA
ATAGACGAGCTCATGCACCCGCTCCACCCGTCCCTTCCCTATGTCTATGA
TGACCTCGTACATTGGGGAGGGAAGCAATGGGACCCGAGTAGGACTGAGT
AG

Synonyms

Publications