rna6251, rna6251 (mRNA) Nannochloropsis gaditana

Overview
Namerna6251
Unique Namerna6251
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length424
Alignment locationCM002468.1:91196..92071 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101033g2.4764.mrna
Orig protein idgnl|cribi|Naga_101033g2.4764
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:91196..92071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101033g2gene6044Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24436.1cds6236Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6251rna6251-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6251 ID=rna6251|Name=rna6251|organism=Nannochloropsis gaditana|type=mRNA|length=424bp
TCGTTGTCAAAGTTTCACTTCTCTTTTCCCTCAACGCATACATCACCAGG
AATGCGACGGCTAAGACCATTTTTCGCCTTCCCATGCTGCAGTCTCCTCT
TCCTCCCTCTCCTCTCCTTCTTCCTGCCTGCGGCCGCCGAGGAAGCTCCT
CTATGTGGCACTTCTCCAGCTTTCTTATGGGGCGGCCGTGAAAATTACTT
TGGGGGAAGGGAAGAGTATGCGTTCAGCAGTGTCGGTCACGACGAAGTTG
TGGAGAGCGTCCGGAGTCTTCAACGCCTAGACACGCCACCTGAGGTGGTC
GTCGTCCTTGTGACATCTGCCTCCCCGGACGTCCCCTCCCCATCCTCCCT
CCCGTCCTTAAAAGCGGCCGTCCAGGAAGCGGTCTCCTCGCGAGTCATTC
CCTGCCTGACCAGGTGAGGGAGGG
back to top

protein sequence of rna6251

>rna6251-protein ID=rna6251-protein|Name=rna6251|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MIKSQSAYAPRTHVPILYRGSGGVKRSIAFLFMPFNARGFFTAKYTHAKV
HSIKRTASMACFGCGQWKCIFSTPHLLLTALLSCRRWTWAISSTRLSKRN
PSDWIYEERGYPESCKDTLYA
back to top

mRNA from alignment at CM002468.1:91196..92071-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6251 ID=rna6251|Name=rna6251|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at CM002468.1:91196..92071- (Nannochloropsis gaditana)
AGAAAGGGGCCGACTAGACACTTGAAAAGGTTCGCGGAGTGTACGACTGA
GAAATTCGAATTTTGTGGGCCAGCTAAACACACAATCATTGCCTATCACA
CAATCAGGTCGCGAGCACAATTTTGGCATGATGCCTGTTTAACAGATGAG
GACATCCCGAAAATAGGATGACTTTGACGTTGTAGGCTGTGCAGGCATCA
AAAATGGTCAAAGAAACCCAGGATTTCGGGCCACCAGGAGGAAGAACGAT
GCGACCGCAGGTGTTGGCGAGCCACGCAAAGCCAGCTTGTGGCATAAACG
ATAATCTCAACCCCGTCTTGGACCGTGTAAGTGAAACGCGCCTTACAGAG
TTACCAAGTGGTCACATGCATGTGGGGAGGGATTTTACAAGGAGATTACA
GGCATGATTAAGTCACAAAGCGCGTACGCACCACGGACACATGTGCCGAT
CTTGTACCGGGGCAGCGGGGGGGTAAAGCGAAGTATTGCCTTCCTTTTCA
TGCCTTTTAATGCCCGCGGTTTTTTTACCGCCAAGTACACACACGCCAAA
GTACATTCCATTAAACGTACTGCCTCGATGGCATGTTTTGGTTGCGGACA
GTGGAAGTGCATTTTTAGCACGCCGCACCTACTCTTAACGGCCCTCCTCT
CGTGTCGCCGATGGACTTGGGCCATAAGTTCTACACGCCTGTCAAAGAGA
AATCCATCTGATTGGATATATGAGGAGAGAGGTTACCCTGAGTCCTGCAA
AGATACCTTATATGCTTAAAAGATTGTATTCAGGGTCAGAACAGGGGGAG
GGCCTTCACGTGTGCCTATCGACAAGCACACTTGGGGCTGAGCACACTTG
ATTGTAGCAAAAGAAATACCTTCACC
back to top

Coding sequence (CDS) from alignment at CM002468.1:91196..92071-

>rna6251 ID=rna6251|Name=rna6251|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002468.1:91196..92071- (Nannochloropsis gaditana)
ATGATTAAGTCACAAAGCGCGTACGCACCACGGACACATGTGCCGATCTT
GTACCGGGGCAGCGGGGGGGTAAAGCGAAGTATTGCCTTCCTTTTCATGC
CTTTTAATGCCCGCGGTTTTTTTACCGCCAAGTACACACACGCCAAAGTA
CATTCCATTAAACGTACTGCCTCGATGGCATGTTTTGGTTGCGGACAGTG
GAAGTGCATTTTTAGCACGCCGCACCTACTCTTAACGGCCCTCCTCTCGT
GTCGCCGATGGACTTGGGCCATAAGTTCTACACGCCTGTCAAAGAGAAAT
CCATCTGATTGGATATATGAGGAGAGAGGTTACCCTGAGTCCTGCAAAGA
TACCTTATATGCTTAA
back to top
Synonyms
Publications