rna6248, rna6248 (mRNA) Nannochloropsis gaditana

Overview
Namerna6248
Unique Namerna6248
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationCM002468.1:87235..87638 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102440g1.1412.mrna
Orig protein idgnl|cribi|Naga_102440g1.1412
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:87235..87638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102440g1gene6041Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6248rna6248-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24440.1cds6233Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6248 ID=rna6248|Name=rna6248|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGTGGTTTGCGACACGGAAAGATCAATTGAGGCGTCATAACGATTCGAA
AACGAGCGGAAAGACAAAAGACCGGTTACATGCTTTCATAGGTGTGAATT
GTAATGATCACCCCTCGCCTGTACGAACAAATAGGGTCAAACAGAACTCA
GTATCAAATTCTGGATTGAATTCGACCGTCTTTTGGCAGCGATTGGACGT
GTTTAAAGCTATTCGCCCATTTGATACCTCAATCCTTAAACGCTGTAAAC
AGACAGGAGAAAACGATATCCTTGTCATAGAAATCTGCGTGATTTAA
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protein sequence of rna6248

>rna6248-protein ID=rna6248-protein|Name=rna6248|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MEWEGGRSAAGGGAGRVVGGEEGDKKTPKNWLQVKSLCSRCSSTQLYLLR
WCGCYEAPSSGSIVSCQPTLESTYCSRRAQVENSPFTILIKISHRVLSDF
LGEFLMPASCCHSF
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mRNA from alignment at CM002468.1:87235..87638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6248 ID=rna6248|Name=rna6248|organism=Nannochloropsis gaditana|type=mRNA|length=404bp|location=Sequence derived from alignment at CM002468.1:87235..87638- (Nannochloropsis gaditana)
ATGGAATGGGAGGGAGGTCGTTCGGCCGCGGGGGGCGGAGCGGGAAGGGT
GGTCGGGGGGGAGGAGGGGGATAAAAAGACGCCAAAGAATTGGTTGCAGG
TGAAAAGTTTGTGTTCACGGTGTTCCTCGACACAGCTGTACTTGTTGCGT
TGGTGTGGTTGTTACGAAGCACCGTCGTCGGGATCCATCGTGTCTTGTCA
ACCAACCTTGGAGAGCACTTACTGCTCGAGACGTGCCCAGGTGGAGAACT
CGCCTTTCACTATTTTAATTAAAATATCTCATCGCGTCCTCTCTGATTTT
CTAGGAGAGTTTTTAATGCCGGCGAGGTTCACACACACACAGAAAGAGAA
AAAAGATCTCGTCATATTCGCTGCCTTGAACGAAGCTGCTGTCATTCTTT
TTAA
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Coding sequence (CDS) from alignment at CM002468.1:87235..87638-

>rna6248 ID=rna6248|Name=rna6248|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002468.1:87235..87638- (Nannochloropsis gaditana)
CTGCTGTCATTCTTTTTAAATGGAATGGGAGGGAGGTCGTTCGGCCGCGG
GGGGCGGAGCGGGAAGGGTGGTCGGGGGGGAGGAGGGGGATAAAAAGACG
CCAAAGAATTGGTTGCAGGTGAAAAGTTTGTGTTCACGGTGTTCCTCGAC
ACAGCTGTACTTGTTGCGTTGGTGTGGTTGTTACGAAGCACCGTCGTCGG
GATCCATCGTGTCTTGTCAACCAACCTTGGAGAGCACTTACTGCTCGAGA
CGTGCCCAGGTGGAGAACTCGCCTTTCACTATTTTAATTAAAATATCTCA
TCGCGTCCTCTCTGATTTTCTAGGAGAGTTTTTAATGCCGGCGAGCTGCT
GTCATTCTTTTTAAATGGAATGGGAGGGAGGTCGTTCGGCCGCGGGGGGC
GGAGCGGGAAGGGTGGTCGGGGGGGAGGAGGGGGATAAAAAGACGCCAAA
GAATTGGTTGCAGGTGAAAAGTTTGTGTTCACGGTGTTCCTCGACACAGC
TGTACTTGTTGCGTTGGTGTGGTTGTTACGAAGCACCGTCGTCGGGATCC
ATCGTGTCTTGTCAACCAACCTTGGAGAGCACTTACTGCTCGAGACGTGC
CCAGGTGGAGAACTCGCCTTTCACTATTTTAATTAAAATATCTCATCGCG
TCCTCTCTGATTTTCTAGGAGAGTTTTTAATGCCGGCGAG
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Synonyms
Publications