rna6242, rna6242 (mRNA) Nannochloropsis gaditana

Overview
Namerna6242
Unique Namerna6242
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length650
Alignment locationCM002468.1:63196..64258 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100820g4.5791.mrna
Orig protein idgnl|cribi|Naga_100820g4.5791
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:63196..64258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100820g4gene6033Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24444.1cds6227Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6242rna6242-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6242 ID=rna6242|Name=rna6242|organism=Nannochloropsis gaditana|type=mRNA|length=650bp
TCAGTTCTCCCCACGTACGTCCTCGATTGCATCGACGATGTGCAGACCAA
GGCAGAGCTTTTGATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCG
CCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAG
CTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTCAGATACCTCCT
TCGGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGTATACTCCCACG
AGAAACCGCGCGGATCCCTCCTCCCTCTCACCGACGAGCAAGAAGCAGCC
CCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGT
CCTTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCT
TGTGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGAAGGACTT
TCTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCG
CGCGACCTTCCAGAACCGCGACACGAACGACATCTCCATGCAGGACATCG
AGGAAGTGTGTCAAGATATATGGCGCTGTCGCTGTGTGCTGACAGGGGCC
CGTTTAGGAACCGGGAAGGTCTTTGCGCTCACACGGTACGCCTTCCCTCC
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protein sequence of rna6242

>rna6242-protein ID=rna6242-protein|Name=rna6242|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MLASFYDRCLIGIISTQKASNMSEYVPPPPLPSTSSATNLSRASSHVCRD
VIRFLRSACSLTTEYADTLALYLKGRDPSDPELLTLRTLQNRLSLILPPL
PLPSAPHETGDEMARPPIDRVLGDADLLQLIFARFVDGKSAGLTSRKSLG
VLGLVCRSWQAVAWRDALWEEICRETLPLLEVEEGGGADGGKHMPQWSRR
EMMRKHGMALAGPGRRLLSGQWVDEVFVCFEIFEKESGRRLYVGLGAINL
FQREDPEDPVRAGGRAGERAGGREGKEGRGNVVLLPPVKRV
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mRNA from alignment at CM002468.1:63196..64258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6242 ID=rna6242|Name=rna6242|organism=Nannochloropsis gaditana|type=mRNA|length=1063bp|location=Sequence derived from alignment at CM002468.1:63196..64258- (Nannochloropsis gaditana)
GTGAGATATCTATCGTGAAGGTGAAGGAGGAGAAGAGAGTAACAATCGGT
GTATCGGGTACTTTTCGAGGGCAGATTGGTTCTCATCGTGGGGAGGATCA
GCAGTCTTATTAGCGAGTATTTTGAAGTCGTTCTGACTGACATCCGAAGG
CATACCAACTTATACAAACACGCTCTCGCACATTGTCATGCTTGCTTCTT
TCTATGACAGGTGCTTGATCGGCATCATATCCACGCAAAAGGCATCCAAT
ATGTCAGAATACGTGCCACCTCCACCCCTCCCATCGACGTCCTCTGCCAC
AAACCTCAGTCGTGCCTCCTCACACGTCTGTCGCGACGTCATACGTTTCC
TCCGCTCTGCTTGCTCGCTCACCACCGAATATGCAGACACGCTCGCGTTA
TATTTAAAGGGCCGAGACCCATCTGACCCCGAACTTTTGACCCTACGGAC
CCTGCAAAACCGCCTCTCCCTCATCCTCCCCCCCCTCCCCCTGCCCTCAG
CCCCTCACGAAACTGGAGACGAGATGGCCCGGCCTCCCATCGATCGCGTC
CTGGGTGACGCCGATCTCCTTCAATTAATTTTCGCCCGGTTCGTAGACGG
TAAATCCGCCGGGCTGACGTCCCGAAAATCGCTTGGGGTCTTGGGCTTGG
TGTGCCGGTCGTGGCAGGCGGTGGCCTGGAGGGACGCGCTGTGGGAAGAA
ATCTGTCGGGAGACGCTCCCTTTGCTGGAGGTGGAGGAGGGAGGCGGAGC
GGACGGCGGCAAACACATGCCGCAATGGTCTCGGCGGGAAATGATGAGGA
AGCACGGGATGGCGCTGGCGGGGCCGGGGAGGCGGCTGCTCTCTGGACAG
TGGGTGGACGAGGTTTTCGTGTGTTTCGAGATATTCGAGAAGGAGAGCGG
GAGGAGGCTGTACGTGGGCTTGGGCGCGATAAACTTGTTTCAGCGAGAGG
ACCCGGAGGACCCGGTGAGGGCGGGGGGGAGGGCGGGGGAGAGGGCGGGA
GGGAGGGAAGGGAAAGAAGGAAGGGGCAATGTCGTGCTTCTCCCTCCCGT
AAAGAGGGTGTGA
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Coding sequence (CDS) from alignment at CM002468.1:63196..64258-

>rna6242 ID=rna6242|Name=rna6242|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002468.1:63196..64258- (Nannochloropsis gaditana)
ATGCTTGCTTCTTTCTATGACAGGTGCTTGATCGGCATCATATCCACGCA
AAAGGCATCCAATATGTCAGAATACGTGCCACCTCCACCCCTCCCATCGA
CGTCCTCTGCCACAAACCTCAGTCGTGCCTCCTCACACGTCTGTCGCGAC
GTCATACGTTTCCTCCGCTCTGCTTGCTCGCTCACCACCGAATATGCAGA
CACGCTCGCGTTATATTTAAAGGGCCGAGACCCATCTGACCCCGAACTTT
TGACCCTACGGACCCTGCAAAACCGCCTCTCCCTCATCCTCCCCCCCCTC
CCCCTGCCCTCAGCCCCTCACGAAACTGGAGACGAGATGGCCCGGCCTCC
CATCGATCGCGTCCTGGGTGACGCCGATCTCCTTCAATTAATTTTCGCCC
GGTTCGTAGACGGTAAATCCGCCGGGCTGACGTCCCGAAAATCGCTTGGG
GTCTTGGGCTTGGTGTGCCGGTCGTGGCAGGCGGTGGCCTGGAGGGACGC
GCTGTGGGAAGAAATCTGTCGGGAGACGCTCCCTTTGCTGGAGGTGGAGG
AGGGAGGCGGAGCGGACGGCGGCAAACACATGCCGCAATGGTCTCGGCGG
GAAATGATGAGGAAGCACGGGATGGCGCTGGCGGGGCCGGGGAGGCGGCT
GCTCTCTGGACAGTGGGTGGACGAGGTTTTCGTGTGTTTCGAGATATTCG
AGAAGGAGAGCGGGAGGAGGCTGTACGTGGGCTTGGGCGCGATAAACTTG
TTTCAGCGAGAGGACCCGGAGGACCCGGTGAGGGCGGGGGGGAGGGCGGG
GGAGAGGGCGGGAGGGAGGGAAGGGAAAGAAGGAAGGGGCAATGTCGTGC
TTCTCCCTCCCGTAAAGAGGGTGTGA
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Synonyms
Publications