rna6236, rna6236 (mRNA) Nannochloropsis gaditana

Overview
Namerna6236
Unique Namerna6236
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length381
Alignment locationCM002468.1:50785..51105 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100486g5.7029.mrna
Orig protein idgnl|cribi|Naga_100486g5.7029
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:50785..51105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100486g5gene6027Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6236rna6236-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24453.1cds6221Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6236 ID=rna6236|Name=rna6236|organism=Nannochloropsis gaditana|type=mRNA|length=381bp
CTTAGTTCCTGGCCACGATCGTCACCGGATCCATGAGTACTCAGTCCGAC
CAAGGCCGGGATCAGGCCACCCGGCGCGTCATTCAGGGGCTTAAAAATAT
TTACAAAAGCACGATTTTGCCGCTCGAGCAGATGTACATGTATGACGCCT
TCTATTCTCCTGCGCTTTCGGACTCCGAGTTTGACTCGAAACCCATGGTC
ATGCTTGTGGGCCAGTACAGTACCGGGAAGACCTCGTTCATTCGGTACCT
GATCGGTCGCGACTTTCCCGGGCAACGCATTGGTCCTGAGCCCACGACCG
ACCGGTTCGTGGCGGTCATGGACGGGCCTGAGGAGAGGGTGATCCCCGGT
AGGGAGGGAGGGAGGGAGGGAGATGGGAAGG
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protein sequence of rna6236

>rna6236-protein ID=rna6236-protein|Name=rna6236|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MKCMHATRSRGSWTTDYWCTGKFACSLWWDVALPASIGQLSVCTGSPLLE
NKSPALYLFNDERVFSHCLVRFACGAHLFFSQILSLFSGVIDVAHTAFSE
DTNLSH
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mRNA from alignment at CM002468.1:50785..51105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6236 ID=rna6236|Name=rna6236|organism=Nannochloropsis gaditana|type=mRNA|length=321bp|location=Sequence derived from alignment at CM002468.1:50785..51105+ (Nannochloropsis gaditana)
ATGAAATGCATGCACGCCACACGTAGTAGGGGCAGCTGGACTACTGACTA
CTGGTGCACAGGGAAGTTTGCGTGCTCCCTTTGGTGGGATGtggccctcc
ctgcttcaATTGGCCAACTCTCGGTCTGCACGGGCTCCCCGCTTTTGGAG
AATAAAAGTCCAGCACTATACCTTTTCAATGATGAAAGGGTATTCTCACA
CTGTTTGGTGCGGTTCGCATGCGGAGCACATCTTTTTTTCTCACAAATTT
TATCGTTGTTCTCCGGCGTTATTGATGTCGCACACACAGCATTTAGTGAA
GATACCAACCTGTCTCATTGA
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Coding sequence (CDS) from alignment at CM002468.1:50785..51105+

>rna6236 ID=rna6236|Name=rna6236|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002468.1:50785..51105+ (Nannochloropsis gaditana)
ATGAAATGCATGCACGCCACACGTAGTAGGGGCAGCTGGACTACTGACTA
CTGGTGCACAGGGAAGTTTGCGTGCTCCCTTTGGTGGGATGtggccctcc
ctgcttcaATTGGCCAACTCTCGGTCTGCACGGGCTCCCCGCTTTTGGAG
AATAAAAGTCCAGCACTATACCTTTTCAATGATGAAAGGGTATTCTCACA
CTGTTTGGTGCGGTTCGCATGCGGAGCACATCTTTTTTTCTCACAAATTT
TATCGTTGTTCTCCGGCGTTATTGATGTCGCACACACAGCATTTAGTGAA
GATACCAACCTGTCTCATTGA
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Synonyms
Publications