rna623, rna623 (mRNA) Nannochloropsis gaditana

Overview
Namerna623
Unique Namerna623
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length894
Alignment locationCM002456.1:17928..19136 -

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Properties
Property NameValue
Producttocopherol polyprenyltransferase-like protein
Orig transcript idgnl|cribi|Naga_100225g6.3533.mrna
Orig protein idgnl|cribi|Naga_100225g6.3533
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:17928..19136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100225g6gene599Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30055.1cds623Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna623rna623-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna623 ID=rna623|Name=rna623|organism=Nannochloropsis gaditana|type=mRNA|length=894bp
ATGCGCACAGAGGCTACGATGGAAGCAGATGAATGTGAGACCCGACAACG
GTATCATCACGCGGCAATGCCCGCGAGTGCTACTTTTGGGTCTCAACTGG
GGCTAAGTGCTGAGAAGGGAGGTATGATAGAAGAGGATGAAGAGCTGCAT
CGGCTGGAACAACACATGGAGGGAATTGGCAAAAACTCAAAAGATTCTGA
TACGAGCTTCTTTCAAAAAGCTCGGCAGACCACATTGGAGGGTTTAGCGG
CTCTGAAGCGCTCCATTAGTGGCAGCCGGGAGAAGGAGAGGGAGGAGAGG
GAGGAAATGTGCCGTAAGGAGGTAGTTTTTGGAGAGAGGGGTTACGGAAC
TTGTCCGTCCTCCGAGCTTGAGCAAGACATGCATCGCATGATGCAGGCAG
CTGTTGACGTTTTGAAGGAACCGACTGAGAGTCCCACGCGTAATACTACT
CGTTTGCATGCACCTGAGCTTTACCACCCGGAATCGGTGACTAGCTACGA
AGAATTGAGGAAACGGAATGCGACAGGTAAGGAAATGGAAGGAGAGTCAG
ATATAGACGCCACCACGCAACAAGTCGTGTCGAAGATGTTTGATGCAAGT
GGTGAAGAGACAAAGCCAGAAGGTCTCGAGGTCGAGGAGAAGGAAAACCA
GTCTGTCATCGACAGCCTGGGAAGCAAAGCCACAGGAATCGTCGAAAAGA
TGGGAGCTATGACACAAAGTACACAAGACATCAAAGACAACAACGAAGAG
GATCAAGAAGATGATGCCCTGGAAATGATGCAGATACGGAAGGGATGCAT
ATGTGCGTGCATTTGCGTAGGTAAGAGGTACTTAATAATGAGGGTCCCGG
GTATTCATCCAAGAAAACTTCGGAAACAAGTTATGTTGAAATAG
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protein sequence of rna623

>rna623-protein ID=rna623-protein|Name=rna623|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MMGRMTISRGRAVVWLTSVAAPVVLFLTTLLLVNSRSTAFVRSPIPRNPQ
SPFSNFSGSKKVLPRYPSDPSSSRIGMHSSASAGAAPLEGGLHVPPSKQG
GLRDRLDALYRFTRPHTIRGTILASLMGVFRCFLEHPKAFANPLQPMPRA
ILGLLALLCGNVFIVGINQIYDVEIDKVNKPFLPLAAQRMTGKAAWAVVL
AAGAGGLAITKSFFTPLIFNMYAAGIVAGTLYSVPPFYFKRFPLIAAATI
AFVRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMTIFAGVIAVSKDL
PDTEGDKKYNVRTFATRVGVKNMARGAAGVLFLNYLSAIAQGVVNPSGAF
RQWVMVGGHTVLAALLIQRYKKLEPDSLASIKAFYKSIWDLFYLEYALYP
FL
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mRNA from alignment at CM002456.1:17928..19136-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna623 ID=rna623|Name=rna623|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp|location=Sequence derived from alignment at CM002456.1:17928..19136- (Nannochloropsis gaditana)
ATGATGGGGCGGATGACCATCTCAAGAGGGCGAGCTGTAGTGTGGCTCAC
ATCGGTGGCGGCCCCGGTGGTCCTTTTTTTAACCACTTTGCTGCTTGTGA
ACTCCAGATCCACTGCCTTTGTCCGTTCTCCAATCCCCAGGAACCCGCAA
TCCCCCTTCAGCAACTTTTCAGGCAGCAAGAAAGTCTTGCCACGGTACCC
GTCTGATCCTTCGTCCTCCCGTATCGGCATGCACTCAAGCGCCAGCGCGG
GAGCCGCACCTCTGGAAGGGGGCCTCCACGTACCTCCGTCTAAGCAGGGC
GGACTCCGGGACAGACTGGATGCTCTCTATCGCTTCACTCGACCACACAC
CATCCGCGGGACCATTCTCGCCTCCCTAATGGGCGTCTTTCGTTGTTTCC
TGGAGCATCCGAAAGCTTTTGCCAACCCTTTACAGCCCATGCCACGTGCG
ATTTTGGGACTCCTTGCCCTCCTCTGTGGGAATGTGTTCATTGTGGGCAT
TAATCAGATCTACGATGTGGAAATCGACAAGGTAAACAAACCATTCTTGC
CGTTAGCAGCTCAGCGGATGACTGGAAAGGCTGCCTGGGCGGTCGTTTTG
GCAGCGGGCGCGGGCGGACTGGCCATTACCAAATCATTTTTCACCCCCCT
CATCTTCAACATGTATGCGGCAGGCATAGTGGCAGGGACGCTCTATTCTG
TCCCACCCTTCTATTTCAAGCGTTTTCCCCTGATTGCCGCAGCAACGATT
GCATTCGTGCGAGGGTTTAGCCTCAATTTTGGAGTGTACTATGCTGTTCG
GGAAGCTCTGGGAATCCCATTCGCCTGGAACCCTATCGTTCTATTCATCA
CACGCTTCATGACCATCTTTGCCGGTGTCATAGCCGTCTCAAAGGATCTT
CCTGATACGGAGGGAGACAAAAAGTACAACGTTCGAACGTTTGCCACGCG
TGTCGGAGTCAAGAATATGGCGCGGGGAGCGGCGGGGGTGCTCTTTCTCA
ATTATCTTTCCGCGATTGCACAAGGTGTTGTAAATCCTAGTGGAGCTTTC
AGACAGTGGGTAATGGTGGGCGGCCACACTGTACTGGCAGCGCTGCTAAT
ACAGCGGTATAAGAAGCTTGAACCGGACTCATTGGCTTCTATCAAGGCCT
TTTATAAGAGTATCTGGGATTTGTTTTATCTGGAATACGCTTTGTACCCA
TTCCTGTAG
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Coding sequence (CDS) from alignment at CM002456.1:17928..19136-

>rna623 ID=rna623|Name=rna623|organism=Nannochloropsis gaditana|type=CDS|length=1209bp|location=Sequence derived from alignment at CM002456.1:17928..19136- (Nannochloropsis gaditana)
ATGATGGGGCGGATGACCATCTCAAGAGGGCGAGCTGTAGTGTGGCTCAC
ATCGGTGGCGGCCCCGGTGGTCCTTTTTTTAACCACTTTGCTGCTTGTGA
ACTCCAGATCCACTGCCTTTGTCCGTTCTCCAATCCCCAGGAACCCGCAA
TCCCCCTTCAGCAACTTTTCAGGCAGCAAGAAAGTCTTGCCACGGTACCC
GTCTGATCCTTCGTCCTCCCGTATCGGCATGCACTCAAGCGCCAGCGCGG
GAGCCGCACCTCTGGAAGGGGGCCTCCACGTACCTCCGTCTAAGCAGGGC
GGACTCCGGGACAGACTGGATGCTCTCTATCGCTTCACTCGACCACACAC
CATCCGCGGGACCATTCTCGCCTCCCTAATGGGCGTCTTTCGTTGTTTCC
TGGAGCATCCGAAAGCTTTTGCCAACCCTTTACAGCCCATGCCACGTGCG
ATTTTGGGACTCCTTGCCCTCCTCTGTGGGAATGTGTTCATTGTGGGCAT
TAATCAGATCTACGATGTGGAAATCGACAAGGTAAACAAACCATTCTTGC
CGTTAGCAGCTCAGCGGATGACTGGAAAGGCTGCCTGGGCGGTCGTTTTG
GCAGCGGGCGCGGGCGGACTGGCCATTACCAAATCATTTTTCACCCCCCT
CATCTTCAACATGTATGCGGCAGGCATAGTGGCAGGGACGCTCTATTCTG
TCCCACCCTTCTATTTCAAGCGTTTTCCCCTGATTGCCGCAGCAACGATT
GCATTCGTGCGAGGGTTTAGCCTCAATTTTGGAGTGTACTATGCTGTTCG
GGAAGCTCTGGGAATCCCATTCGCCTGGAACCCTATCGTTCTATTCATCA
CACGCTTCATGACCATCTTTGCCGGTGTCATAGCCGTCTCAAAGGATCTT
CCTGATACGGAGGGAGACAAAAAGTACAACGTTCGAACGTTTGCCACGCG
TGTCGGAGTCAAGAATATGGCGCGGGGAGCGGCGGGGGTGCTCTTTCTCA
ATTATCTTTCCGCGATTGCACAAGGTGTTGTAAATCCTAGTGGAGCTTTC
AGACAGTGGGTAATGGTGGGCGGCCACACTGTACTGGCAGCGCTGCTAAT
ACAGCGGTATAAGAAGCTTGAACCGGACTCATTGGCTTCTATCAAGGCCT
TTTATAAGAGTATCTGGGATTTGTTTTATCTGGAATACGCTTTGTACCCA
TTCCTGTAG
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Synonyms
Publications