rna6218, rna6218 (mRNA) Nannochloropsis gaditana

Overview
Namerna6218
Unique Namerna6218
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1528
Alignment locationCM002467.1:872240..872909 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102234g1.9011.mrna
Orig protein idgnl|cribi|Naga_102234g1.9011
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:872240..872909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102234g1gene6007Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6218rna6218-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24470.1cds6203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6218 ID=rna6218|Name=rna6218|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp
CGTGTTCAGGATTGGGCGCAGCAAGGCCAAGAAGATCAGCAAGGAGCAGG
TGAACGTCACGTTCAAGGACGTGGCCGGGGTGGACGAGGCGAAGCGGGAG
GTGATGGAGTTCGTCGAGTTCCTCAAGAACCCGAGGCGCTTCACGGACCT
GGGCGCCAAGATCCCCAAAGGAGCTCTTCTCTGCGGCCCTCCCGGCACGG
GAAAGACTCTCTTGGCCAAAGCCACGGCAGGCGAGGCGTCTGTCCCCTTC
TACTCCATCTCAGGCTCCGACTTCATCGAGATGTTTGTGGGTGTGGGCCC
AGCCCGCGTGCGTGACCTCTTCAAAGAGGCGAGGGAGTCGGCGCCCTGCA
TCGTCTTTATCGACGAGATCGACGCCGTGGGTCGGCAGCGGGGGAAAGGA
GGGTTCTCGGGGGGCAACGACGAGAGGGAGAACACGCTGAACCAGCTCCT
GGTGGAGATGGACGGCTTCTCCCCTTCCACGGGGGTGGTTGTCCTGGCGG
GGACGAACAGGGTAGACATCTTGGACGCCGCCTTGACGCGGCCCGGGCGC
TTCGACCGTCAGATCCAGGTGGACCGACCGGACATAAAAGGGCGCGCGGA
CATATTCAAGGTGCACCTGAAGCCCGTGAAGCTGTCGACGGGCCTGGAGG
AGGTGGCGAACAGGATGGCGGCCTTGACTCCTGGCTTCACGGGCGCCGAC
ATCGCCAACATCTGCAACGAGGCCGCCATCGTGGCGGCTCGCCGCAACAA
GACGAGCGTGGACCTCGCGGACTTCGAGACGGCGACCGAGCGCATCATAG
CCGGACTGGAGAGCCACAAGCTGATTTCACCCGAAGAGAAACGCATCGTC
GCATATCATGAGGCGGGGCATGCCGTGGCAGGCTGGAACTTGCAGCACGC
CGACCCTCTCCTCAAGGTGACCATTGTGCCCCGCGGCTCCGGCGCTCTGG
GCTTCGCGCAATATCTCCCCAAAGAAGTCTTTCTCCGGACAAGAGAGCAA
ATCATGGACATGGTCTGCATGACGCTGGCGGGCAGGGCGTCCGAGGAGAT
CTTCTTCGAGAAGGTTACAACCGGTGCCTCGGACGACTTGCGGAAAGTGA
CTCAGATCGTCTATCAGATGATCCAGGTGTACGGGATGAACGATCGGATC
GGGAACCTCGCTTTTCCCAAGCAGGAGGGCGGCTTCGGCATGGAGCAGCG
CGCCTACAGCGAGACGACTGCTCAGGCGATGGACGAGGAGGCGAAGAAGC
TAGTGGATGAGGCCTATACGCGCACCCTTGTGCTTCTTCAAGAGAAGAAA
GCTCAGATCGAGAACATTGCGGAGCTCCTCCTCAAGAAAGAGACCATCAA
CCACGACGACATCGTCGGGGCTATCGGTCCTCGTCCCTTCGCCGCGCACA
AGGAGTACCAGGAGTTCATCGAGAGCATCAAGCCCGCGGTCAGCGCCGAC
CCGCCAAGTAAGGATGCCAAGAAGGAGGATGAGACCAAGGAGGACGCGAG
TTTGCCGCCCAACCTGACGCCGGCGTAG
back to top

protein sequence of rna6218

>rna6218-protein ID=rna6218-protein|Name=rna6218|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MEGWSFVWEGGKREEGGRGEGSEERREFSQEVLVQQSPPRHLVSPAPCFH
RQRQRQRVPSEGEPPGLDLVSLRRFRFWRRQHAWTKWSPPRLRVRPLLLQ
HRKRRVLRTKAGERAGEGAGRKGGRSERRETTLRGWGDAFPSEAGSPHDL
TAPPNLPLSPSFLPISLLSAT
back to top

mRNA from alignment at CM002467.1:872240..872909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6218 ID=rna6218|Name=rna6218|organism=Nannochloropsis gaditana|type=mRNA|length=670bp|location=Sequence derived from alignment at CM002467.1:872240..872909- (Nannochloropsis gaditana)
ATGGAGGGGTGGTCTTTTGTCTGGGAAGGAGGGAAACGGGAGGAAGGAGG
GAGGGGAGAAGGAAGCGAAGAAAGGAGGGAGTTCTCGCAAGAGGTCCTGG
TGCAGCAGTCGCCCCCCCGTCACCTCGTCTCCCCCGCCCCCTGTTTCCAC
AGGCAACGGCAGCGGCAGCGCGTACCCTCAGAGGGTGAACCCCCCGGGCT
CGACCTCGTCTCCCTTCGGCGATTTCGGTTCTGGAGGCGCCAGCACGCCT
GGACCAAGTGGAGCCCGTGAGTCGATCGGCATCTCCCCCTCTTCCTCCAC
GACCGTCCTCTGCTGACATTATCTCTGCTCCCTCCCATTTTCTTGTCCCC
CCACCCTCTCTCCGCTTGCCTTCCCCACCCTCTCTCCGCTTGCCTTCCCC
ACCCTCTCTCCCTCCTCCAGCCCCCGGCTCCGTGTACGCCCCCTACTACT
TCAACATCGGAAGCGTCGAGTCCTTCGAACGAAAGCTGGAGAGCGTGCAG
GTGAGGGGGCGGGCAGGAAGGGAGGGAGGAGTGAAAGGAGGGAGACTACC
TTAAGGGGCTGGGGAGACGCGTTCCCCTCCGAAGCCGGGAGCCCTCACGA
CCTGACGGCTCCTCCTAACCTCCCCCTCTCTCCTTCCTTCCTGCCCATCT
CCCTCCTCAGCGCGACTTGA
back to top

Coding sequence (CDS) from alignment at CM002467.1:872240..872909-

>rna6218 ID=rna6218|Name=rna6218|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002467.1:872240..872909- (Nannochloropsis gaditana)
CCCCCGGCTCCGTGTACGCCCCCTACTACTTCAACATCGGAAGCGTCGAG
TCCTTCGAACGAAAGCTGGAGAGCGTGCAGGTGAGGGGGCGGGCAGGAAG
GGAGGGAGGAGTGAAAGGAGGGAGACTACCTTAAGGGGCTGGGGAGACGC
GTTCCCCTCCGAAGCCGGGAGCCCTCACGACCTGACGGCTCCTCCTAACC
TCCCCCTCTCTCCTTCCTTCCTGCCCATCTCCCTCCTCAGCGCGACTTGA
ATGGAGGGGTGGTCTTTTGTCTGGGAAGGAGGGAAACGGGAGGAAGGAGG
GAGGGGAGAAGGAAGCGAAGAAAGGAGGGAGTTCTCGCAAGAGGTCCTGG
TGCAGCAGTCGCCCCCCCGTCACCTCGTCTCCCCCGCCCCCTGTTTCCAC
AGGCAACGGCAGCGGCAGCGCGTACCCTCAGAGGGTGAACCCCCCGGGCT
CGACCTCGTCTCCCTTCGGCGATTTCGGTTCTGGAGGCGCCAGCACGCCT
GGACCAAGTGGAGCCCCCCCCGGCTCCGTGTACGCCCCCTACTACTTCAA
CATCGGAAGCGTCGAGTCCTTCGAACGAAAGCTGGAGAGCGTGCAGGTGA
GGGGGCGGGCAGGAAGGGAGGGAGGAGTGAAAGGAGGGAGACTACCTTAA
GGGGCTGGGGAGACGCGTTCCCCTCCGAAGCCGGGAGCCCTCACGACCTG
ACGGCTCCTCCTAACCTCCCCCTCTCTCCTTCCTTCCTGCCCATCTCCCT
CCTCAGCGCGACTTGAATGGAGGGGTGGTCTTTTGTCTGGGAAGGAGGGA
AACGGGAGGAAGGAGGGAGGGGAGAAGGAAGCGAAGAAAGGAGGGAGTTC
TCGCAAGAGGTCCTGGTGCAGCAGTCGCCCCCCCGTCACCTCGTCTCCCC
CGCCCCCTGTTTCCACAGGCAACGGCAGCGGCAGCGCGTACCCTCAGAGG
GTGAACCCCCCGGGCTCGACCTCGTCTCCCTTCGGCGATTTCGGTTCTGG
AGGCGCCAGCACGCCTGGACCAAGTGGAGCCC
back to top
Synonyms
Publications