rna6204, rna6204 (mRNA) Nannochloropsis gaditana

Overview
Namerna6204
Unique Namerna6204
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationCM002467.1:831868..833459 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100662g2.4387.mrna
Orig protein idgnl|cribi|Naga_100662g2.4387
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:831868..833459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100662g2gene5993Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6204rna6204-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24484.1cds6189Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6204 ID=rna6204|Name=rna6204|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
CCCCTACTCCCTCCCTCCCTCCCTCCCCCCCTCCTTCCCTCCTTCCCTCC
TGCTCTCCCTTCTCGCTACATTCTCCCCCTCTCCTGTCTCTCTCCCGCCC
AGGAGGCTTTGCTCGCCCTCTTAGGGTCCGTGATGCGCTTCCTCCGCTTG
GCGCGCGAGGTGGCTGGGAGGGAGAGGAAGATGCTGACCAAGCGCTACCT
GGAGGTGGTGGTGCGAGAAACAGCCGAAATTCACCGGCTGTTCGTGAAGC
AGGTTCACGCCTTCCGCGTCCTCGTCGACGGGGTCCCCGAAGGGGAAGAG
CTCTCCGTGCGCCTCGCCGCCACCCACCATCTCCCAGACCCTCCTCCACC
CCGCCCTTCAACCCCTCCCTCGTCCACGCCCTCCCTCCCGCCCTCCGTAA
AGGAGGAGGGCGAAGCGGTTGGAGGAAAAGTTGACAGGGAGATACCCGGA
GTTCATGTCCCGCCGCGCCTTGGACAGGCACCGCACCCTTGTGACGAGCC
ACCGCGGGCGCAAGAACGAGAAAAACGACGGCCGAGAAGCCCGCAGCAAA
GACCAGGCGCCTCCCAGGAAAGGGAAGGGCAGCATGCACCCGTCAACCAC
AGGCTTCGCCGGCCCGAAGAACCCTATTATCCCATGGTAGAAAGCACGCA
TCCTCCTGCGCCAGTCACCAGGCCGCTTGCACCGGGGCCCACGCTGCCTT
GCAAGCTGCCTTCCTCGCGTCCCATCCAGGAGGAACCGCGGGCGTGGCAC
GCCGCGAAAAGTGGCTCGGGGAGGCCGCTCTCCTTCCTTCCTCTCCCTGA
CTCTCGCTCCCACCCACCTCCTTCCTCTGTGCCTCTACCCTCCGCGTCCT
CCTTCCGCCCATCGCCAACACCGCAGCTGCCTTCCTCCCTGCCCCTCCAC
CCCGGCACTAGTTCCTCTTTGCCGTCTCACCTCCCTCCCCATCGGAATGT
GGATGCCCACGGGGGGAAAGAGGGTGTAGGTGGGAGGGACACGGCTTCAG
AGGGCAGCTTCGAGACTCTCGACGAGCACATGCAGCGACTCCGAGTGTCG
TGGAGGAAAACCGCCCCCAGCAACTAGATGCGAGCCGAGGTAGCACAGGG
AGGCGAAGGGGGCGAAAAGAGAATAGGATGCGTGGCGTCGAGGGGGCAAG
AGGACGAGAAAGATTAAGAGCGCGAATGAGGATGCAACGACAAGAAGGGT
TTCTCAAGGCAGAACATCCCTCTCTGCGCCAGAAAAGTTCGCATTGATAG
GATTCCTTGCCTGCCCAGAAAGAAAACCGTTCCAAGGGTCTCCGTTTTC
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protein sequence of rna6204

>rna6204-protein ID=rna6204-protein|Name=rna6204|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MDPGVAGHLIGQGAALGVIHVLSGPDHISALAALTATVPPYKAFMAGVQW
GLGHSTGLIIVTGIFVSVEHEVMDRVAGYFEWVVGFLMILLGVWTMWRAF
HPPKDSLAALTPREKASFSVSPVQRLSGEEDSKKTSKSLHREAPGGSGIN
ESNSTGRGGEGEDEDAGEAVVVNFDDKGTPEESPGSTASGTEEEKQEEKS
GRKWWRPTQIKEKILSFVVGIVHGVAGPGGILGVLPAVQLRDWSKSSLYL
ATFCIISSVTMGVFAAIYGGITHGLGKRMGEHDKKSGKQRAEKLEFGLKI
FSALLSFVVGVLWIVLSATGKMGEVFPE
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mRNA from alignment at CM002467.1:831868..833459-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6204 ID=rna6204|Name=rna6204|organism=Nannochloropsis gaditana|type=mRNA|length=1592bp|location=Sequence derived from alignment at CM002467.1:831868..833459- (Nannochloropsis gaditana)
ATGGATCCCGGTGTTGCTGGACATTTGATTGGTCAAGGCGCCGCCTTGGG
TGTTATTCATGTCCTCTCTGGTAGGTGGATTGAGTACACGCATCAGCACC
TATCACCAATACCACCACCAACAAATCCTCCCGAGCGACGCGTGGCACTC
ACCGGACGCCCTTGCCCTACCCTTTATTCAGGTCCGGACCACATCTCAGC
GTTGGCCGCATTGACGGCAACTGTCCCGCCTTACAAAGCTTTCATGGCTG
GTGTTCAGTGGGGTCTGGGCCACAGCACAGGCCTTATCATTGTAACTGGC
ATCTTCGTCAGTGTCGAACACGAGGTGATGGACAGAGTAGCAGGTTATTT
CGAGTGGGTTGTTGGCTTTCTGATGATACTTCTGGGAGTATGGACCATGT
GGAGAGCCTTCCATCCCCCCAAGGACTCCCTGGCCGCCTTAACACCGCGG
GAGAAGGCGAGTTTCTCTGTTTCCCCCGTCCAGCGGCTGTCTGGTGAAGA
AGACTCGAAAAAGACTTCGAAAAGTCTTCACAGGGAGGCTCCTGGAGGGT
CAGGCATCAACGAGTCGAATTCCACGGGGAGGGGGGGGGAGGGAGAGGAC
GAGGATGCAGGGGAGGCGGTGGTGGTGAACTTCGATGACAAGGGCACTCC
GGAGGAAAGCCCCGGTTCCACCGCCTCGGGCACAGAAGAGGAAAAGCAGG
AGGAAAAAAGTGGGAGGAAATGGTGGAGACCGACACAGATCAAGGAGAAA
ATCCTTTCCTTCGTCGTCGGCATTGTGCACGGGGTGGCGGGTCCGGGGGG
TATCCTCGGTGTCCTCCCTGCCGTCCAACTCCGGGACTGGAGCAAATCCT
CTTTGTACTTGGCTACCTTTTGCATCATCTCTTCTGTGACAATGGGGGTG
TTCGCGGCCATCTACGGCGGGATCACGCACGGGCTGGGCAAGCGCATGGG
GGAACACGACAAAAAGAGCGGAAAACAGCGGGCGGAAAAATTGGAGTTTG
GCCTGAAGATATTCAGCGCCCTCCTCTCTTTTGTCGTGGGTGTACTCTGG
ATCGTCTTGTCGGCGACGGGTAAGATGGGGGAGGTCTTTCCCGAGTAGAG
GGAGGGAGAAAAGGGGGGGGACATGGGCGGGAGGAGGGAGGGAAAGGAGC
CGGTTGTCAGAACGCTTCCCCAGGAGGGCGATGGTACACGCCGAGAATCC
GCAAGGAGTCCTTTTTCGTCTTTAGGAAAGGCCTTGTTAAGGATAACATC
CGTCGGCCAGGGAGGGCAAAACAAGCTTGGCCGAGAAGGAGAGAGGGAGA
AAGCAGAGACGGTGAAGGAGCGGTTACCGAGGCGGCGGACCCGTCTCATC
TGTGGTGGTGCCACAGAGCAATGAATTGGGTCGCAAAGAATGGAACGGCT
GGAGCTCAATCCCGAGTGGGGGTGTCAAGAGAGCAGTCGTCAGGCAAAGG
CACAATCGGTAGCTTTCCATGATAGCACCTGATAGCACCCCAGGCCTTGC
GTCTCTCAAATAAATCAAAGTACTGAAAATTAGCAAATTATCAGGCATGG
GGAGGAAGTAAAGATCACGAAAGTAAGTAAATAGAAAACGGA
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Coding sequence (CDS) from alignment at CM002467.1:831868..833459-

>rna6204 ID=rna6204|Name=rna6204|organism=Nannochloropsis gaditana|type=CDS|length=1974bp|location=Sequence derived from alignment at CM002467.1:831868..833459- (Nannochloropsis gaditana)
GTCCGGACCACATCTCAGCGTTGGCCGCATTGACGGCAACTGTCCCGCCT
TACAAAGCTTTCATGGCTGGTGTTCAGTGGGGTCTGGGCCACAGCACAGG
CCTTATCATTGTAACTGGCATCTTCGTCAGTGTCGAACACGAGGTGATGG
ACAGAGTAGCAGGTTATTTCGAGTGGGTTGTTGGCTTTCTGATGATACTT
CTGGGAGTATGGACCATGTGGAGAGCCTTCCATCCCCCCAAGGACTCCCT
GGCCGCCTTAACACCGCGGGAGAAGGCGAGTTTCTCTGTTTCCCCCGTCC
AGCGGCTGTCTGGTGAAGAAGACTCGAAAAAGACTTCGAAAAGTCTTCAC
AGGGAGGCTCCTGGAGGGTCAGGCATCAACGAGTCGAATTCCACGGGGAG
GGGGGGGGAGGGAGAGGACGAGGATGCAGGGGAGGCGGTGGTGGTGAACT
TCGATGACAAGGGCACTCCGGAGGAAAGCCCCGGTTCCACCGCCTCGGGC
ACAGAAGAGGAAAAGCAGGAGGAAAAAAGTGGGAGGAAATGGTGGAGACC
GACACAGATCAAGGAGAAAATCCTTTCCTTCGTCGTCGGCATTGTGCACG
GGGTGGCGGGTCCGGGGGGTATCCTCGGTGTCCTCCCTGCCGTCCAACTC
CGGGACTGGAGCAAATCCTCTTTGTACTTGGCTACCTTTTGCATCATCTC
TTCTGTGACAATGGGGGTGTTCGCGGCCATCTACGGCGGGATCACGCACG
GGCTGGGCAAGCGCATGGGGGAACACGACAAAAAGAGCGGAAAACAGCGG
GCGGAAAAATTGGAGTTTGGCCTGAAGATATTCAGCGCCCTCCTCTCTTT
TGTCGTGGGTGTACTCTGGATCGTCTTGTCGGCGACGGGTAAGATGGGGG
AGGTCTTTCCCGAGTAGATGGATCCCGGTGTTGCTGGACATTTGATTGGT
CAAGGCGCCGCCTTGGGTGTTATTCATGTCCTCTCTGGTCCGGACCACAT
CTCAGCGTTGGCCGCATTGACGGCAACTGTCCCGCCTTACAAAGCTTTCA
TGGCTGGTGTTCAGTGGGGTCTGGGCCACAGCACAGGCCTTATCATTGTA
ACTGGCATCTTCGTCAGTGTCGAACACGAGGTGATGGACAGAGTAGCAGG
TTATTTCGAGTGGGTTGTTGGCTTTCTGATGATACTTCTGGGAGTATGGA
CCATGTGGAGAGCCTTCCATCCCCCCAAGGACTCCCTGGCCGCCTTAACA
CCGCGGGAGAAGGCGAGTTTCTCTGTTTCCCCCGTCCAGCGGCTGTCTGG
TGAAGAAGACTCGAAAAAGACTTCGAAAAGTCTTCACAGGGAGGCTCCTG
GAGGGTCAGGCATCAACGAGTCGAATTCCACGGGGAGGGGGGGGGAGGGA
GAGGACGAGGATGCAGGGGAGGCGGTGGTGGTGAACTTCGATGACAAGGG
CACTCCGGAGGAAAGCCCCGGTTCCACCGCCTCGGGCACAGAAGAGGAAA
AGCAGGAGGAAAAAAGTGGGAGGAAATGGTGGAGACCGACACAGATCAAG
GAGAAAATCCTTTCCTTCGTCGTCGGCATTGTGCACGGGGTGGCGGGTCC
GGGGGGTATCCTCGGTGTCCTCCCTGCCGTCCAACTCCGGGACTGGAGCA
AATCCTCTTTGTACTTGGCTACCTTTTGCATCATCTCTTCTGTGACAATG
GGGGTGTTCGCGGCCATCTACGGCGGGATCACGCACGGGCTGGGCAAGCG
CATGGGGGAACACGACAAAAAGAGCGGAAAACAGCGGGCGGAAAAATTGG
AGTTTGGCCTGAAGATATTCAGCGCCCTCCTCTCTTTTGTCGTGGGTGTA
CTCTGGATCGTCTTGTCGGCGACGGGTAAGATGGGGGAGGTCTTTCCCGA
GTAGATGGATCCCGGTGTTGCTGGACATTTGATTGGTCAAGGCGCCGCCT
TGGGTGTTATTCATGTCCTCTCTG
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Synonyms
Publications