rna6197, rna6197 (mRNA) Nannochloropsis gaditana

Overview
Namerna6197
Unique Namerna6197
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002467.1:817981..818384 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101876g2.9907.mrna
Orig protein idgnl|cribi|Naga_101876g2.9907
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:817981..818384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101876g2gene5987Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6197rna6197-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24491.1cds6182Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6197 ID=rna6197|Name=rna6197|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGCGCATGACAGGGAAGCACGAGGGTTGCGTGTTCAACGGTGGGACCAA
AGAGATCTTAAATTCAAAGTTTTGGATATCGGGTGCATATGCCGGGAAAT
CCTGCAAAATTAGCCATAGTTGGACGCCACGGGAGGGTGGGCGGTGCTGG
GAAGGGGAAAAGACTAAGAGGGAGGTGGTAGGGAGGCAGACGACACGCGA
AGGGAGGCATGAGAGGCGAGCGAGGGGGAGGAGGGAATGGAAAGCAGTGC
ACGGCCCCGCGTTTTTTATTTTAAATACCAGCCACGATAGGGAGGCTGTG
CGTGATCGGCGATAG
back to top

protein sequence of rna6197

>rna6197-protein ID=rna6197-protein|Name=rna6197|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MVGFELGREDVCVPSLFCKEAHRLQSDRAIERQDGRAWRGVTKRVMRRED
HEGWYWHRGERSQPKRRGTGSHFIQSYFTEKTRASSSVLFGESMSEAFEM
HGKRSHPEQDGGVQLIFWE
back to top

mRNA from alignment at CM002467.1:817981..818384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6197 ID=rna6197|Name=rna6197|organism=Nannochloropsis gaditana|type=mRNA|length=404bp|location=Sequence derived from alignment at CM002467.1:817981..818384- (Nannochloropsis gaditana)
ATGGTAGGGTTCGAGTTAAGATGACAGTTAATATGGTAGGGTTAGACTTA
AGATGAAGGTTAGGGCGTGAGGATGTGTGCGTGCCGAGTCTATTTTGTAA
AGAAGCGCATAGGCTGCAGTCAGACCGAGCGATCGAACGGCAGGATGGGA
GGGCGTGGCGGGGTGTGACGAAAAGGGTGATGAGGAGGGAGGACCACGAG
GGGTGGTATTGGCACCGGGGAGAACGAAGTCAGCCCAAGAGGAGGGGAAC
GGGCAGTCATTTTATACAGTCATATTTCACAGAGAAAACGAGGGCGTCTT
CCTCTGTGCTTTTTGGGGAAAGTATGTCAGAGGCATTTGAAATGCACGGT
AAAAGGAGCCATCCCGAGCAAGACGGCGGCGTCCAGCTGATCTTTTGGGA
ATAA
back to top

Coding sequence (CDS) from alignment at CM002467.1:817981..818384-

>rna6197 ID=rna6197|Name=rna6197|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002467.1:817981..818384- (Nannochloropsis gaditana)
GTTAGGGCGTGAGGATGTGTGCGTGCCGAGTCTATTTTGTAAAGAAGCGC
ATAGGCTGCAGTCAGACCGAGCGATCGAACGGCAGGATGGGAGGGCGTGG
CGGGGTGTGACGAAAAGGGTGATGAGGAGGGAGGACCACGAGGGGTGGTA
TTGGCACCGGGGAGAACGAAGTCAGCCCAAGAGGAGGGGAACGGGCAGTC
ATTTTATACAGTCATATTTCACAGAGAAAACGAGGGCGTCTTCCTCTGTG
CTTTTTGGGGAAAGTATGTCAGAGGCATTTGAAATGCACGGTAAAAGGAG
CCATCCCGAGCAAGACGGCGGCGTCCAGCTGATCTTTTGGGAATAAATGG
TAGGGTTCGAGTTAGGGCGTGAGGATGTGTGCGTGCCGAGTCTATTTTGT
AAAGAAGCGCATAGGCTGCAGTCAGACCGAGCGATCGAACGGCAGGATGG
GAGGGCGTGGCGGGGTGTGACGAAAAGGGTGATGAGGAGGGAGGACCACG
AGGGGTGGTATTGGCACCGGGGAGAACGAAGTCAGCCCAAGAGGAGGGGA
ACGGGCAGTCATTTTATACAGTCATATTTCACAGAGAAAACGAGGGCGTC
TTCCTCTGTGCTTTTTGGGGAAAGTATGTCAGAGGCATTTGAAATGCACG
GTAAAAGGAGCCATCCCGAGCAAGACGGCGGCGTCCAGCTGATCTTTTGG
GAATAAATGGTAGGGTTCGA
back to top
Synonyms
Publications