rna6194, rna6194 (mRNA) Nannochloropsis gaditana

Overview
Namerna6194
Unique Namerna6194
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002467.1:813709..814475 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100883g2.3080.mrna
Orig protein idgnl|cribi|Naga_100883g2.3080
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:813709..814475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100883g2gene5984Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6194rna6194-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24494.1cds6179Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6194 ID=rna6194|Name=rna6194|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
CCCCAGGCGTGATGGACATCACATGTTCTTACTGTCTTGCTGCTTGCTGA
GAAAGTGAAGTTTCGCGCGAGCTCTCAATGTCCGAGACCAGAATGCTTGT
TCATCGGCATCCATTTTTCACGAATTCTTCACGTCAACCTCACAGGAGAG
GTGCCTGCACACTGTCCACACTCTCTGTCGCCCTTGTCAGCCATGGTGGG
CGTGGAGGAGTGTGGGAAGGATGGTACATGTGCATGTGGGTTTTGGCGGA
AACTCTCCCTGCTCGGCCGAGGTGCGCATGGCTCCGTGTATCTGGGCCGG
CTGACGAAATCAGGAGAGCTGGTCGCGGTCAAACAGGTGCTAGTCAACAA
ACGGGTAGACCGAGAGATGGCAGGCGCTGTGGTGCAAGAAATCGGCCTTA
CACGGTCCCTCTCCCACGTGCACATCGTCCGCTACTTGGGAACCCACCAA
TGCGGGAGCTGCTTGAACATCTTTTTGGAATACTGCCCTCGTGGATCGCT
ACGGCACATGCTTCAAAGCGAAGGTAGGTGCCTTCACCCTGTCCTTCGTC
GGCGGCGCGTCCTCCTATTCACTACCTCCCTCCCTCCTCCC
back to top

protein sequence of rna6194

>rna6194-protein ID=rna6194-protein|Name=rna6194|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MHPNPAPLANKYHSQNIRKFSLCPSKSCVGCHYFAAVLMESFTLTFLWLV
KHEVNTLRISLSLPRFIV
back to top

mRNA from alignment at CM002467.1:813709..814475+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6194 ID=rna6194|Name=rna6194|organism=Nannochloropsis gaditana|type=mRNA|length=767bp|location=Sequence derived from alignment at CM002467.1:813709..814475+ (Nannochloropsis gaditana)
TGATTTCGGAATGCTCGTGTGCCGAGGAGCCGAGAGCAGCCGAGACAGAA
ATGTTCGTCGttcgggcggcgggggggtggAAATGGCCTGGAAAACGACC
ACTGGTGCACGTGGGACGCGTACAAGTGGGATTTTGTCCTCGTTTGGTGT
TTGGGGTTGTGTGTGATCGTTGGTGTTGagtgggaaagaaggaccGTGAC
ATTTGTGGCACAAGAAGGTGCGTCCTCACATGAAATTTCTTCCTTCGCTG
GAAGTCTGTTGTTACACCACATGCATCCAAATCCAGCACCGCTTGCAAAT
AAATATCACTCGCAGAATATCCGTAAATTTTCGCTTTGCCCGAGTAAGTC
GTGTGTGGGGTGTCACTATTTCGCAGCTGTCTTAATGGAGAGCTTCACGT
TGACATTCCTCTGGTTGGTGAAACATGAAGTAAACACGCTCCGCATATCG
TTATCGCTACCGAGATTCATTGTTTAGATGCGATACAAGCATCTGAGGTA
CATTAGAACATCTTCATAAAATACTCTAGGGGTGGCACGAAAAAAATTAT
GGGGAACACCGGGTATATTAAGATCTCCCACGGCAGGGATTGCCCAAGCA
CATCGAGCCGCTTGCACGTTTTAAATATATATTATGCCTCTCTTGGAAAG
CCAAAATAAAATAAAATCTTTCGCTTATCACCCTGACGGCTTGAGTGTAT
TTAAAttgtgaaagaaaaagcaagggaGCAGAGAGCTACAATCACTACTC
TTTAATTTCTTCGATAT
back to top

Coding sequence (CDS) from alignment at CM002467.1:813709..814475+

>rna6194 ID=rna6194|Name=rna6194|organism=Nannochloropsis gaditana|type=CDS|length=207bp|location=Sequence derived from alignment at CM002467.1:813709..814475+ (Nannochloropsis gaditana)
ATGCATCCAAATCCAGCACCGCTTGCAAATAAATATCACTCGCAGAATAT
CCGTAAATTTTCGCTTTGCCCGAGTAAGTCGTGTGTGGGGTGTCACTATT
TCGCAGCTGTCTTAATGGAGAGCTTCACGTTGACATTCCTCTGGTTGGTG
AAACATGAAGTAAACACGCTCCGCATATCGTTATCGCTACCGAGATTCAT
TGTTTAG
back to top
Synonyms
Publications