rna6186, rna6186 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6186
Unique Name	rna6186
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1431
Alignment location	CM002467.1:797763..799318 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101196g1.4671.mrna
Orig protein id	gnl\|cribi\|Naga_101196g1.4671
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:797763..799318 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101196g1	gene5976	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6186	rna6186-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24501.1	cds6171	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:797763..799318-
coding sequence from alignment at CM002467.1:797763..799318-

mRNA sequence

>rna6186 ID=rna6186|Name=rna6186|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp
TACCCGCTCCCCCTCCCTGCCCCCTGACCTCGAGATGCAGCGAATGGATG
CGGAAAGGGCGCTGCGTAGGGCCAGAACCAATGCAGAAATTTTAGAAAAG
GAATTCAAGCTGTTGAAAAGCCGGGCAGAAACGGCTCGCCCGGCGTTTCA
AGCAACGGTCGGACGGCTTGAAGCACTGCGACAGGGAAAGGATGCCAAGA
GAGTGCGGGAAGTCGAGCAAGTCGTGGCCGCCGTCCGCGCCGCCGACAAA
GCCCTGGAAGAATCGAAGCGCCTCGTCTTCCGTGTCCGACGTTGCCTGGA
GAAGACCGGCGGAGGGCACAGAGGGCAGGAAATGGACAACGGAAAAGAGA
GAGCGCGGTACCAGATACTCCGAACGCTGCACACTGTGCGGGTCCCGATC
GTCACATTCAAGGACATGGGCGACAAACGGAAGCAGGCAGGGAAGGCGGG
AAAGGAAGGAGGGGGCGCGTGGCAATGCGACTTGTGCATCAACAACATCG
GCGCGGTTTACAATACAGCCCTCCTCTACTCCTATCTCCAGTGCGATGAC
CGTGTGCGGCCCCTGATCCTTCTCGTCAAGGCATGGACCCGCGTCCACCA
ATGCAATGGGGCCGCTCAAGGCTTCTTCTCCTCCTATGCCCTCTCCCTCC
TCTGTATCCACTATTTGCAGCAGCTCCGCCTCCTCCCTGTCCTTCAACAC
CCCTCCCTCCTTCCACCCCACCCACGCGACCGCGAGTACTGCTTCGGTTG
CGACGTGTCCTACTGTGCGGATATAACCGCTGCCAACGCTGCTTTCTCCC
CCGTCCTTCCTTCCTCTTTCCCTCTGAGCACCCTCGTGCGGGGCTTTTTT
CATTATTACGGGTACCAGTTCAACCCGGTCCGCACCGTCGTTTCGATCCG
CCAAAGGATGCTCATGGACAAGGGAGATGTGCCGGCGGAGGGAGGGCCGT
CGGGGGGGGGAAGAAGGAAGACGTTTAAGGTATTGTGGCGGATGGCGGTG
GAGGACCCCTTTGAATGCTGTGGGAGCGCGAAAGAACACGATTTGGGGGA
TGTTTTGAAGGTGGACAAGCAAAAGATGATGCTGGATGGATTTAGAAAAG
CGTACAAAGAGCTCTCCCGGGTAGGGACAGGGGAAAGAATGGAGGACAAG
AAGAGATGGAAAGCCTTGTTTTTAGGGAAAAAAGAGGCTGGGGCAGCGAA
AGGAATGAGGGATTAGGACGCAAAGGAAGAGGTGCGATGGGAAGGGAACA
AGGTGAGGAGGAGGGAAGTAAAGGGCGAGATATGAGGGAGGAAGGCGAGT
AAGAATGAGAGCGGGCTGATGGGCAGTGACTGAATAACAGGTATGTTGAT
AGCATGTGCCAGAGGGCGCCGGTATGAAGACATGAAAGCATTCTTTCTCC
GAGATACAAGAAATGATGCAGGGCGAGATGA

protein sequence of rna6186

>rna6186-protein ID=rna6186-protein|Name=rna6186|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MEGTGSAPCNTTDIASTAKSAIKGARIAGVKTIRDADTPPENKAPAAFEA
TILRITSDLALIGKNSRKGSTSNETDGADFDQGENSENEDSGAAEGVEDA
VGTELQKIVPTGKESPPSLLSIIDDLHSCLGIHYPPRPSSSSSSPPQSTP
VLKKFQVSPGAYAIYTSLTQVALLAADGHAGAFPPPSKRVQPCPSDPSSC
LRHAARLLHRAVRADLSSFLSFLKGKQAEALRKQAQRLADLHAWYLKGPT
LPPALPPTLTPSHSTLLEATCVECFDRLCPPPDLAEEVEAVRDRLEGVLR
EHPAFRSARVLVFGSAPCGLGSSGSDIDLSRGTLSQKVAAASRAAGPGAL
PMDDGEQALQEPGTTVERPREKA

mRNA from alignment at CM002467.1:797763..799318-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6186 ID=rna6186|Name=rna6186|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp|location=Sequence derived from alignment at CM002467.1:797763..799318- (Nannochloropsis gaditana)
ATGGAGGGTACGGGCTCAGCTCCCTGCAATACAACAGACATTGCTTCTAC
AGCAAAGTCCGCAATTAAGGGCGCGAGGATAGCTGGCGTCAAAACTATAC
GGGATGCTGATACTCCACCAGAAAACAAAGCGCCTGCTGCTTTTGAGGCG
ACGATTCTTCGCATAACCTCCGACTTAGCCTTGATTGGCAAAAATTCCCG
TAAAGGCAGCACATCAAACGAGACAGATGGCGCTGACTTCGACCAGGGAG
AAAATTCGGAAAACGAAGACTCTGGAGCAGCGGAGGGAGTGGAGGACGCC
GTCGGCACGGAGTTGCAGAAGATTGTCCCGACCGGGAAGGAGAGTCCGCC
CTCTCTCCTCTCTATCATCGACGACTTGCACAGTTGCTTGGGAATCCACT
ATCCTCCACGTCCTTCCTCCTCCTCCTCCTCCCCTCCTCAATCCACGCCT
GTCCTCAAAAAGTTTCAGGTCTCGCCCGGGGCCTATGCAATATACACCTC
CCTCACGCAGGTCGCCCTCCTCGCCGCTGATGGCCACGCTGGCGCCTTTC
CTCCTCCCTCCAAGCGCGTTCAACCATGCCCGTCTGACCCGTCCTCCTGC
CTGCGCCACGCGGCCCGTCTGCTTCACCGAGCTGTCCGTGCCGATCTTTC
CAGCTTTCTCTCCTTTTTAAAGGGCAAGCAGGCGGAAGCCCTGAGGAAGC
AGGCCCAACGCCTTGCCGACCTCCACGCCTGGTACCTGAAGGGCCCCACC
CTTCCCCCCGCCCTCCCTCCCACCCTCACGCCGTCCCACTCGACGCTCCT
GGAGGCCACCTGCGTGGAGTGCTTCGACAGGCTCTGCCCCCCCCCGGACC
TGGCGGAGGAGGTGGAGGCCGTGCGGGACAGGCTGGAGGGGGTCCTGCGA
GAGCATCCAGCATTCCGATCCGCTCGTGTCCTGGTCTTCGGCTCAGCCCC
TTGTGGCCTGGGCTCCTCGGGCAGGTGAAGGGGAGGAGGGGGAGGAGGGA
GGGGAGGAGAGAGGGGGGGCTATTGAGCTCAAAACTGAGCAGAGAGGAGG
GAAAACTAGAGGTCGAGTGTCCTTGAGAAAAAGGCGCTGCCTGTAATTGA
TGGGAATGTAGCGTACGTGTGATGATCTCCTTCCTCGCTTATCCCTCCCC
TTTCCCCTTCTTTCCTCCCTCCCTCTCTCCCTCCCTCTCTTCTCTTTATG
AGGCCCCGACCGGGTGATCCTTGCTGACCCATTCCCCTCCCTCTCTCCCT
CCTCCTTTCCCTCCCTCCCTCCCTCCCTCCTTCCTCTCCATGCAGTGACA
TCGACCTGTGTCTCTTCATTCCTTCCCTCGTAGAGGCTACCAACAGACAC
GAAGCGGCCCGCGCTCGCGCCCTCGACCGCCTCCACCACCCCTCCCTCTG
CCCCTACCTCCACCTCCTCCAGCAAGAGGAACACTTTCGCAAAAGGTGGC
AGCGGCAAGTCGAGCTGCGGGGCCGGGGGCTCTCCCGATGGACGATGGCG
AACAAGCTCTGCAAGAGCCTGGAACAACAGTTGAACGCCCTCGAGAAAAA
GCGTGA

Coding sequence (CDS) from alignment at CM002467.1:797763..799318-

>rna6186 ID=rna6186|Name=rna6186|organism=Nannochloropsis gaditana|type=CDS|length=3366bp|location=Sequence derived from alignment at CM002467.1:797763..799318- (Nannochloropsis gaditana)
CAAGAGGAACACTTTCGCAAAAGGTGGCAGCGGCAAGTCGAGCTGCGGGG
CCGGGGGCTCTCCCGATGGACGATGGCGAACAAGCTCTGCAAGAGCCTGG
AACAACAGTTGAACGCCCTCGAGAAAAAGCGTGATGACATCGACCTGTAT
GGAGGGTACGGGCTCAGCTCCCTGCAATACAACAGACATTGCTTCTACAG
CAAAGTCCGCAATTAAGGGCGCGAGGATAGCTGGCGTCAAAACTATACGG
GATGCTGATACTCCACCAGAAAACAAAGCGCCTGCTGCTTTTGAGGCGAC
GATTCTTCGCATAACCTCCGACTTAGCCTTGATTGGCAAAAATTCCCGTA
AAGGCAGCACATCAAACGAGACAGATGGCGCTGACTTCGACCAGGGAGAA
AATTCGGAAAACGAAGACTCTGGAGCAGCGGAGGGAGTGGAGGACGCCGT
CGGCACGGAGTTGCAGAAGATTGTCCCGACCGGGAAGGAGAGTCCGCCCT
CTCTCCTCTCTATCATCGACGACTTGCACAGTTGCTTGGGAATCCACTAT
CCTCCACGTCCTTCCTCCTCCTCCTCCTCCCCTCCTCAATCCACGCCTGT
CCTCAAAAAGTTTCAGGTCTCGCCCGGGGCCTATGCAATATACACCTCCC
TCACGCAGGTCGCCCTCCTCGCCGCTGATGGCCACGCTGGCGCCTTTCCT
CCTCCCTCCAAGCGCGTTCAACCATGCCCGTCTGACCCGTCCTCCTGCCT
GCGCCACGCGGCCCGTCTGCTTCACCGAGCTGTCCGTGCCGATCTTTCCA
GCTTTCTCTCCTTTTTAAAGGGCAAGCAGGCGGAAGCCCTGAGGAAGCAG
GCCCAACGCCTTGCCGACCTCCACGCCTGGTACCTGAAGGGCCCCACCCT
TCCCCCCGCCCTCCCTCCCACCCTCACGCCGTCCCACTCGACGCTCCTGG
AGGCCACCTGCGTGGAGTGCTTCGACAGGCTCTGCCCCCCCCCGGACCTG
GCGGAGGAGGTGGAGGCCGTGCGGGACAGGCTGGAGGGGGTCCTGCGAGA
GCATCCAGCATTCCGATCCGCTCGTGTCCTGGTCTTCGGCTCAGCCCCTT
GTGGCCTGGGCTCCTCGGGCAGCAAGAGGAACACTTTCGCAAAAGGTGGC
AGCGGCAAGTCGAGCTGCGGGGCCGGGGGCTCTCCCGATGGACGATGGCG
AACAAGCTCTGCAAGAGCCTGGAACAACAGTTGAACGCCCTCGAGAAAAA
GCGTGATGACATCGACCTGTATGGAGGGTACGGGCTCAGCTCCCTGCAAT
ACAACAGACATTGCTTCTACAGCAAAGTCCGCAATTAAGGGCGCGAGGAT
AGCTGGCGTCAAAACTATACGGGATGCTGATACTCCACCAGAAAACAAAG
CGCCTGCTGCTTTTGAGGCGACGATTCTTCGCATAACCTCCGACTTAGCC
TTGATTGGCAAAAATTCCCGTAAAGGCAGCACATCAAACGAGACAGATGG
CGCTGACTTCGACCAGGGAGAAAATTCGGAAAACGAAGACTCTGGAGCAG
CGGAGGGAGTGGAGGACGCCGTCGGCACGGAGTTGCAGAAGATTGTCCCG
ACCGGGAAGGAGAGTCCGCCCTCTCTCCTCTCTATCATCGACGACTTGCA
CAGTTGCTTGGGAATCCACTATCCTCCACGTCCTTCCTCCTCCTCCTCCT
CCCCTCCTCAATCCACGCCTGTCCTCAAAAAGTTTCAGGTCTCGCCCGGG
GCCTATGCAATATACACCTCCCTCACGCAGGTCGCCCTCCTCGCCGCTGA
TGGCCACGCTGGCGCCTTTCCTCCTCCCTCCAAGCGCGTTCAACCATGCC
CGTCTGACCCGTCCTCCTGCCTGCGCCACGCGGCCCGTCTGCTTCACCGA
GCTGTCCGTGCCGATCTTTCCAGCTTTCTCTCCTTTTTAAAGGGCAAGCA
GGCGGAAGCCCTGAGGAAGCAGGCCCAACGCCTTGCCGACCTCCACGCCT
GGTACCTGAAGGGCCCCACCCTTCCCCCCGCCCTCCCTCCCACCCTCACG
CCGTCCCACTCGACGCTCCTGGAGGCCACCTGCGTGGAGTGCTTCGACAG
GCTCTGCCCCCCCCCGGACCTGGCGGAGGAGGTGGAGGCCGTGCGGGACA
GGCTGGAGGGGGTCCTGCGAGAGCATCCAGCATTCCGATCCGCTCGTGTC
CTGGTCTTCGGCTCAGCCCCTTGTGGCCTGGGCTCCTCGGGCAGCAAGAG
GAACACTTTCGCAAAAGGTGGCAGCGGCAAGTCGAGCTGCGGGGCCGGGG
GCTCTCCCGATGGACGATGGCGAACAAGCTCTGCAAGAGCCTGGAACAAC
AGTTGAACGCCCTCGAGAAAAAGCGTGATGACATCGACCTGTATGGAGGG
TACGGGCTCAGCTCCCTGCAATACAACAGACATTGCTTCTACAGCAAAGT
CCGCAATTAAGGGCGCGAGGATAGCTGGCGTCAAAACTATACGGGATGCT
GATACTCCACCAGAAAACAAAGCGCCTGCTGCTTTTGAGGCGACGATTCT
TCGCATAACCTCCGACTTAGCCTTGATTGGCAAAAATTCCCGTAAAGGCA
GCACATCAAACGAGACAGATGGCGCTGACTTCGACCAGGGAGAAAATTCG
GAAAACGAAGACTCTGGAGCAGCGGAGGGAGTGGAGGACGCCGTCGGCAC
GGAGTTGCAGAAGATTGTCCCGACCGGGAAGGAGAGTCCGCCCTCTCTCC
TCTCTATCATCGACGACTTGCACAGTTGCTTGGGAATCCACTATCCTCCA
CGTCCTTCCTCCTCCTCCTCCTCCCCTCCTCAATCCACGCCTGTCCTCAA
AAAGTTTCAGGTCTCGCCCGGGGCCTATGCAATATACACCTCCCTCACGC
AGGTCGCCCTCCTCGCCGCTGATGGCCACGCTGGCGCCTTTCCTCCTCCC
TCCAAGCGCGTTCAACCATGCCCGTCTGACCCGTCCTCCTGCCTGCGCCA
CGCGGCCCGTCTGCTTCACCGAGCTGTCCGTGCCGATCTTTCCAGCTTTC
TCTCCTTTTTAAAGGGCAAGCAGGCGGAAGCCCTGAGGAAGCAGGCCCAA
CGCCTTGCCGACCTCCACGCCTGGTACCTGAAGGGCCCCACCCTTCCCCC
CGCCCTCCCTCCCACCCTCACGCCGTCCCACTCGACGCTCCTGGAGGCCA
CCTGCGTGGAGTGCTTCGACAGGCTCTGCCCCCCCCCGGACCTGGCGGAG
GAGGTGGAGGCCGTGCGGGACAGGCTGGAGGGGGTCCTGCGAGAGCATCC
AGCATTCCGATCCGCTCGTGTCCTGGTCTTCGGCTCAGCCCCTTGTGGCC
TGGGCTCCTCGGGCAG

Synonyms

Publications