rna6182, rna6182 (mRNA) Nannochloropsis gaditana

Overview
Namerna6182
Unique Namerna6182
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length303
Alignment locationCM002467.1:788009..788571 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101924g1.7283.mrna
Orig protein idgnl|cribi|Naga_101924g1.7283
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:788009..788571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101924g1gene5972Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6182rna6182-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24506.1cds6167Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6182 ID=rna6182|Name=rna6182|organism=Nannochloropsis gaditana|type=mRNA|length=303bp
ATGGACATAGCACGTGATATCGGCTCTGATCTCTGTCCGTCAACCCTCTG
GCTCCTGTGCTGCTGCTGCCACGTGTCTCTCGCCCTCTCCGTTCTCACGG
GGCTTTGGGTGCTTGCACGTGCGCGTATTTTTTCTTGGCAGGACCTTGGA
CCCGTGACATGCAATGCCGCCTCAGCCGTGGAGGGAACCCAACGGCTCAG
AAAATGCAGGGGAATAGACGCGGCATGTCCATGTGGCAAGTCACGGCCTC
TCTCAAGCTTGCGATGGACGGATGAGGTTACACAGCTTGCGAAAGTAACA
TGA
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protein sequence of rna6182

>rna6182-protein ID=rna6182-protein|Name=rna6182|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MLLILIFAEAALRPDRLPDLVPAERVLPGMSSRGFLFVSSFFASCIRAGT
CEEGKENEKIETGRKQNTRQKEKESSKDGKGIDENKRSRGTGVVVEVFKE
IIAPLLADRI
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mRNA from alignment at CM002467.1:788009..788571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6182 ID=rna6182|Name=rna6182|organism=Nannochloropsis gaditana|type=mRNA|length=563bp|location=Sequence derived from alignment at CM002467.1:788009..788571- (Nannochloropsis gaditana)
ATGCTTCTGATCCTGATTTTCGCGGAGGCGTTGGGTGAGGATGGGGAGAA
GGGGGAGAAGGAGAAGAGGGAGGGAGGTGGGGAGGGAGGGAAGGAGGGCA
AGGCCAGCGTCTTGCCTCCCTGATGTGGGGAACGTGGCTGCTGGGTAGCT
TAGTTGATCCCCTCGCTCACATTTTCTCTCCCTCCTTTCCACACAGGGCT
CTACGGCCTGATCGTCTCCCTGATCTTGTCCCAGCAGAACGTGTACTGCC
AGGCATGAGCTCCCGGGGCTTTTTGTTTGTTTCTTCCTTCTTTGCCTCCT
GCATTCGAGCTGGTTGGGGGGCAAGAGGGAAAACTCCGTGGGACTACGGG
AAGCAGAGGTAGTTGAGGGGAACAGGCACGTGCGAGGAAGGGAAAGAAAA
TGAAAAAATTGAAACGGGGAGGAAGCAAAACACGCGACAGAAAGAAAAAG
AAAGCAGCAAAGATGGCAAAGGGATAGACGAGAACAAGCGGAGTAGGGGA
ACGGGCGTGGTTGTGGAGGTCTTTAAGGAAATCATAGCACCTTTGCTTGC
GGACAGGATTTAA
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Coding sequence (CDS) from alignment at CM002467.1:788009..788571-

>rna6182 ID=rna6182|Name=rna6182|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at CM002467.1:788009..788571- (Nannochloropsis gaditana)
GCACGTGCGAGGAAGGGAAAGAAAATGAAAAAATTGAAACGGGGAGGAAG
CAAAACACGCGACAGAAAGAAAAAGAAAGCAGCAAAGATGGCAAAGGGAT
AGACGAGAACAAGCGGAGTAGGGGAACGGGCGTGGTTGTGGAGGTCTTTA
AGGAAATCATAGCACCTTTGCTTGCGGACAGGATTTAAGGCTCTACGGCC
TGATCGTCTCCCTGATCTTGTCCCAGCAGAACGTGTACTGCCAGGCATGA
GCTCCCGGGGCTTTTTGTTTGTTTCTTCCTTCTTTGCCTCCTGCATTCGA
GCTGATGCTTCTGATCCTGATTTTCGCGGAGGCGCACGTGCGAGGAAGGG
AAAGAAAATGAAAAAATTGAAACGGGGAGGAAGCAAAACACGCGACAGAA
AGAAAAAGAAAGCAGCAAAGATGGCAAAGGGATAGACGAGAACAAGCGGA
GTAGGGGAACGGGCGTGGTTGTGGAGGTCTTTAAGGAAATCATAGCACCT
TTGCTTGCGGACAGGATTTAAGGCTCTACGGCCTGATCGTCTCCCTGATC
TTGTCCCAGCAGAACGTGTACTGCCAGGCATGAGCTCCCGGGGCTTTTTG
TTTGTTTCTTCCTTCTTTGCCTCCTGCATTCGAGCTGATGCTTCTGATCC
TGATTTTCGCGGAGGCGCACGTGCGAGGAAGGGAAAGAAAATGAAAAAAT
TGAAACGGGGAGGAAGCAAAACACGCGACAGAAAGAAAAAGAAAGCAGCA
AAGATGGCAAAGGGATAGACGAGAACAAGCGGAGTAGGGGAACGGGCGTG
GTTGTGGAGGTCTTTAAGGAAATCATAGCACCTTTGCTTGCGGACAGGAT
TTAAGGCTCTACGGCCTGATCGTCTCCCTGATCTTGTCCCAGCAGAACGT
GTACTGCCAGGCATGAGCTCCCGGGGCTTTTTGTTTGTTTCTTCCTTCTT
TGCCTCCTGCATTCGAGCTGATGCTTCTGATCCTGATTTTCGCGGAGGC
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Synonyms
Publications