rna6181, rna6181 (mRNA) Nannochloropsis gaditana

Overview
Namerna6181
Unique Namerna6181
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002467.1:787640..787942 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101924g2.7284.mrna
Orig protein idgnl|cribi|Naga_101924g2.7284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:787640..787942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101924g2gene5971Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6181rna6181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24507.1cds6166Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6181 ID=rna6181|Name=rna6181|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
CAGGTACTTCGTAATTTCGCAAGGACAGAGCCACAGAAGGCAAATTATCG
ACGCGGCTACTGCGGGGGGCACGAGAACAAAATCAAGGCCATCGCGGGTC
TTACAGCGTTCTCCAAAGAGGACAAGTCCGGTCTCGCAGCCATTGTGATT
TACTACTGTGGTCGCACAGCTACTGGAAAAACTAACATCTTTCTGGGCTG
ATAAAAAGCATCGCTTTTTTCCACACCGTGACAGTTGTGGCGATTCCTAC
AGTCACAGTGGCAGAAGGAGGGTTGCGGTAGATGTGGGGGTGAGGCGTCT
TTATTTCTCACATGCCGTCTTACCCAGTTCTCTGCAGCCGCCGCCCATTT
TTCCTTCTTCCTGTCCTTCGTACCTTTCTTGCAACCGCCTATCCGACATC
TTCCGCCAATGTCCAGTCACGTGTCGGTCCGCAAGTCTCCTCCTCCTTCT
TTTCCTCCTCTTCCTCCGATTCCATGTCAGGGATCTTGTCTCGGCTCTCC
CACGGTAAAATCACGCCATTCGAGGCCGAAACCGAGCTGCTTCGACTTCA
ACCACACATATGGAAAGGAGCAGCAGGAGAAAACACGGAGAAAGCAAAGG
GATACGACTCGGTAGAAAGCTTTGCCAAGGTCGACATATCTAGGGCGGCA
CGCACCGGATTGCCGGAGGTGAGTTCAGCAAGGGGGGAGAATCGGGAGGC
GGAAACATCGTGGCCAATATAGGAGGAAAACATCAGGAGGAGGAAGAATT
AGCTCCAGCGTATCTCCTTCTTTGGTCGTTCCAGCCTCC
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protein sequence of rna6181

>rna6181-protein ID=rna6181-protein|Name=rna6181|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MDIARDIGSDLCPSTLWLLCCCCHVSLALSVLTGLWVLARARIFSWQDLG
PVTCNAASAVEGTQRLRKCRGIDAACPCGKSRPLSSLRWTDEVTQLAKVT
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mRNA from alignment at CM002467.1:787640..787942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6181 ID=rna6181|Name=rna6181|organism=Nannochloropsis gaditana|type=mRNA|length=303bp|location=Sequence derived from alignment at CM002467.1:787640..787942+ (Nannochloropsis gaditana)
ATGGACATAGCACGTGATATCGGCTCTGATCTCTGTCCGTCAACCCTCTG
GCTCctgtgctgctgctgccacgtgtctctcgccctctccGTTCTCACGG
GGCTTTGGGTGCTTGCACGTGCGCGTATTTTTTCTTGGCAGGACCTTGGA
CCCGTGACATGCAATGCCGCCTCAGCCGTGGAGGGAACCCAACGGCTCAG
AAAATGCAGGGGAATAGACGCGGCATGTCCATGTGGCAAGTCACGGCCTC
TCTCAAGCTTGCGATGGACGGATGAGGTTACACAGCTTGCGAAAGTAACA
TGA
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Coding sequence (CDS) from alignment at CM002467.1:787640..787942+

>rna6181 ID=rna6181|Name=rna6181|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002467.1:787640..787942+ (Nannochloropsis gaditana)
ATGGACATAGCACGTGATATCGGCTCTGATCTCTGTCCGTCAACCCTCTG
GCTCctgtgctgctgctgccacgtgtctctcgccctctccGTTCTCACGG
GGCTTTGGGTGCTTGCACGTGCGCGTATTTTTTCTTGGCAGGACCTTGGA
CCCGTGACATGCAATGCCGCCTCAGCCGTGGAGGGAACCCAACGGCTCAG
AAAATGCAGGGGAATAGACGCGGCATGTCCATGTGGCAAGTCACGGCCTC
TCTCAAGCTTGCGATGGACGGATGAGGTTACACAGCTTGCGAAAGTAACA
TGA
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Synonyms
Publications