rna6175, rna6175 (mRNA) Nannochloropsis gaditana

Overview
Namerna6175
Unique Namerna6175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length762
Alignment locationCM002467.1:774303..775495 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100560g1.2583.mrna
Orig protein idgnl|cribi|Naga_100560g1.2583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:774303..775495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100560g1gene5965Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24510.1cds6160Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6175rna6175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6175 ID=rna6175|Name=rna6175|organism=Nannochloropsis gaditana|type=mRNA|length=762bp
GGAAGGGAGGACGCAGAGGAGGTCACGGCGCTGCGTCGAATCCTCTTTGC
CCGTCTGGGGGAGATGAACGATAGTCCCTCCTCCATGGAGTTTGTGCTCC
GGCAACTCCAAGTCTCGCCCCACCCCCGCCTACGGCACGCCTTCTACCAC
GTGCTTGTGGCGGTGATGGGGCAGGAAGGAGGGTGGGGGGTCCGCGCGGC
CTTTGCCACCGGGGGTTTTCGGCAGTTTTTGTTGAGCCGCAGCACCGAGA
GGGACAAGGTAGGGATGGAGTGGAAGTACAGTTTGGTGCAAGCCGTGCTT
CGGGAGACAGACGGCGGTGAAGGCGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCGCGGGGTCTGTTGGGAGAAGACGTCTTGGAGGAGC
TCCGAACATATTCCAAAGCCGGACCGTTTTATGTGGGGAGGCAGGTCGAC
GTGGAGACTATGATGTGATCAAGGAGAGGGGAGGCCGGTGGGAGGGAGAA
GCGTGGCAATGGTGAGGGGCGAGGTGCGGGTCAGGGGTAGGGTCGGCCTT
AACCTTAACCCTAACTGAAGAGACATGCGGCCCACGCCCGATGTCGGACC
AAGAGGGTGGGAGCCAGCCCGTGTTGGTATCTGGGTAGAAACCCCGTACA
GACACGCAAGAAGTTTCGATAAGGCACATAAGATCCAGAAACGAGGGGGC
ACACATGGCCATGGAAAGGAAAGCTAATAAGACGAACAAAAAACAAATTT
TGGTGTTCACGA
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protein sequence of rna6175

>rna6175-protein ID=rna6175-protein|Name=rna6175|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MAASSADSASPSPETTPEQWDRIKAFLRALPPSDSLSRTAQSRERERELV
ATFLSQHVSLIQLFLALDQATRRADKDRLHQVARAVNRCFTSALGMDLLT
DPLVLPHLVLGMRHPEEEVRRLTTKILSENLQLREGEGGGGEGEEREEKR
QALIRRLSVGTGDAEDVVSSLSDPALDPPSASPTSNFPMSVAAALAQGIA
DPSIAVAQSSADALLSMMRTCAFPSAPTAHIAPLLAHIHRFASVNPDVLR
NQVLRLRYADVIARAFALADVQPSLHASLASPSTGPALALLFDLARGASE
GGTADELIRFSALELLEAGSGTARGARSMSEAGIVRLLLGLARG
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mRNA from alignment at CM002467.1:774303..775495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6175 ID=rna6175|Name=rna6175|organism=Nannochloropsis gaditana|type=mRNA|length=1193bp|location=Sequence derived from alignment at CM002467.1:774303..775495- (Nannochloropsis gaditana)
TAATTTGCTGCCGGACAGCACTTTCTCTATGAAGAGGTTGACACAACAGC
GCTTGCGGGATATGCACAGAAACTGTGAGCACCACCGTGCCCGCCTAGTG
CAGTTCGTTGTCGCTGACTGATTGCTGTCCTGTGATTGCCAACAAACCAC
ACCCAGAGTGATGGCAGCCTCCTCAGCGGATTCTGCTTCCCCATCACCAG
AGACTACCCCGGAACAATGGGATCGAATCAAGGCTTTCCTCCGCGCGCTT
CCGCCCTCGGACTCATTGTCGCGGACAGCACAGAGTCGGGAACGCGAAAG
GGAGCTGGTGGCCACTTTCCTTTCCCAGCACGTTTCCCTCATACAGCTTT
TCCTCGCCCTGGACCAGGCGACACGGCGTGCGGATAAGGATCGGCTCCAT
CAAGTAGCGCGGGCGGTGAATCGTTGCTTCACAAGTGCGTTAGGCATGGA
TTTACTCACAGACCCGCTGGTGCTGCCCCATTTAGTCCTGGGGATGCGGC
ACCCCGAGGAGGAAGTGAGGCGGTTGACGACGAAAATTCTGAGTGAGAAT
TTGCAGCTGCGTGAGGGGGAAGGAGGCGGGGGCGAAGGGGAGGAAAGGGA
AGAAAAGCGACAAGCTCTGATCCGACGGCTCTCTGTGGGTACAGGAGATG
CAGAAGACGTCGTTTCCTCCCTCTCCGACCCTGCGCTTGACCCCCCATCG
GCCTCCCCCACCTCCAACTTTCCCATGTCCGTCGCCGCCGCGTTGGCTCA
AGGTATAGCGGACCCTAGCATTGCGGTCGCTCAGTCCTCGGCGGACGCCC
TCCTCTCCATGATGCGCACCTGTGCCTTTCCCTCCGCCCCCACCGCCCAC
ATTGCCCCCCTCCTTGCTCACATCCATCGCTTTGCCAGCGTAAACCCCGA
CGTGCTACGGAACCAAGTGCTTCGCCTTCGTTACGCCGATGTGATCGCGC
GCGCGTTCGCCCTGGCGGACGTGCAGCCCTCCCTTCATGCCTCCCTCGCC
TCACCGTCCACGGGACCCGCCCTCGCCCTCCTCTTCGACCTGGCGCGGGG
TGCAAGCGAGGGAGGGACGGCGGACGAGCTCATTCGTTTCAGTGCCCTCG
AGCTCCTGGAGGCAGGGTCAGGGACAGCTCGGGGCGCACGGAGCATGTCG
GAGGCGGGGATTGTGAGGCTGTTGCTGGGGTTGGCGCGGGGGA
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Coding sequence (CDS) from alignment at CM002467.1:774303..775495-

>rna6175 ID=rna6175|Name=rna6175|organism=Nannochloropsis gaditana|type=CDS|length=1033bp|location=Sequence derived from alignment at CM002467.1:774303..775495- (Nannochloropsis gaditana)
ATGGCAGCCTCCTCAGCGGATTCTGCTTCCCCATCACCAGAGACTACCCC
GGAACAATGGGATCGAATCAAGGCTTTCCTCCGCGCGCTTCCGCCCTCGG
ACTCATTGTCGCGGACAGCACAGAGTCGGGAACGCGAAAGGGAGCTGGTG
GCCACTTTCCTTTCCCAGCACGTTTCCCTCATACAGCTTTTCCTCGCCCT
GGACCAGGCGACACGGCGTGCGGATAAGGATCGGCTCCATCAAGTAGCGC
GGGCGGTGAATCGTTGCTTCACAAGTGCGTTAGGCATGGATTTACTCACA
GACCCGCTGGTGCTGCCCCATTTAGTCCTGGGGATGCGGCACCCCGAGGA
GGAAGTGAGGCGGTTGACGACGAAAATTCTGAGTGAGAATTTGCAGCTGC
GTGAGGGGGAAGGAGGCGGGGGCGAAGGGGAGGAAAGGGAAGAAAAGCGA
CAAGCTCTGATCCGACGGCTCTCTGTGGGTACAGGAGATGCAGAAGACGT
CGTTTCCTCCCTCTCCGACCCTGCGCTTGACCCCCCATCGGCCTCCCCCA
CCTCCAACTTTCCCATGTCCGTCGCCGCCGCGTTGGCTCAAGGTATAGCG
GACCCTAGCATTGCGGTCGCTCAGTCCTCGGCGGACGCCCTCCTCTCCAT
GATGCGCACCTGTGCCTTTCCCTCCGCCCCCACCGCCCACATTGCCCCCC
TCCTTGCTCACATCCATCGCTTTGCCAGCGTAAACCCCGACGTGCTACGG
AACCAAGTGCTTCGCCTTCGTTACGCCGATGTGATCGCGCGCGCGTTCGC
CCTGGCGGACGTGCAGCCCTCCCTTCATGCCTCCCTCGCCTCACCGTCCA
CGGGACCCGCCCTCGCCCTCCTCTTCGACCTGGCGCGGGGTGCAAGCGAG
GGAGGGACGGCGGACGAGCTCATTCGTTTCAGTGCCCTCGAGCTCCTGGA
GGCAGGGTCAGGGACAGCTCGGGGCGCACGGAGCATGTCGGAGGCGGGGA
TTGTGAGGCTGTTGCTGGGGTTGGCGCGGGGGA
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Synonyms
Publications