rna6167, rna6167 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6167
Unique Name	rna6167
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1599
Alignment location	CM002467.1:753628..754715 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100545g5.4565.mrna
Orig protein id	gnl\|cribi\|Naga_100545g5.4565
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:753628..754715 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100545g5	gene5957	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24521.1	cds6152	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6167	rna6167-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:753628..754715-
coding sequence from alignment at CM002467.1:753628..754715-

mRNA sequence

>rna6167 ID=rna6167|Name=rna6167|organism=Nannochloropsis gaditana|type=mRNA|length=1599bp
ATGCTCCCACGAAAGGCGGGATCGTGTCTGGTAAGAAATGCTGCTTTGTC
GTGGGCGATCGCCCCACCCAGTATGAGCCAATCCTCACCTCCTTCCTCCC
CCTCCCTCGTCATCCCGCCCACAGAATCCCAACAAAACCCGCCCCTCCCC
GCCTGGCTCCCACCCCCCATTCCTTCCTGCATGGGCCTCATCAACGTCTC
CCGCACTCCCTCCTCGTCCCTCCCGGCCTCCGTTCCTGGATCCCGGGGCC
CGGTCCCTCAAGAGAGGGAGGAGAAAGAAGTCCTCAAACGGAAAAGGGGC
CAGGCAAGCCAAGCCACCGTGGGCGAGAAAGGAAAAACTTCCACGGGGCG
GCAAGCCTTCACCGCCCCGCCCCCCCTCCCGTGCTCCTCCTCGTCCTCCT
CCCACTCCTCCTCCTCCACCACCACGGCCGCCTCCTCCACACCCGGCCTC
CCCCCACCCCCCTTCCTTCCCCCTCCCCCGCCCTCCGCCCCTTCCCCTTC
CACCTCCTTCCTCCTGGACCCCGCGCGCCTCCGCGCCCTCGGGATCGACC
GACAGATGCTCGTGGACGTGGGCATCGAGAACGAGGAGAGTCGGTCGGAC
CCTTTCTACCTTCACATGGCCCACCAGCTCCGACGCGGCGCCCGCAAGAA
GGATCCGAGTGCACCCAAGCGGCCCCTGAGTGCCTACAACCTCTTCTTCC
GGGATTTGAAGGAGGCCTTGACGGCCAAGGGGCCGGCGGTGAAGAAGTCT
TTCGAAGGGTTGGGGAAGTATGTGGGGAAAGAATGGAGGAAGTTGGGGGA
GGAGGAACGGAAACGGTACGAGCAGATGGCGGAGGTGGACCGACGCCGGT
ACCACCGGGAAATGGCCGTCTATGAGGGGAGGGAGGAGGAGTTGGAGGGC
GAAGACGTGGAAATCAAGGAGGGGGGGGAGGGAAAGGGGAGGAAAGCGGA
GGACAAGGGGGGCGGCAAGGTGGGCCAGAGGGAGCTTGGAGGCTCCGACA
CCCGGCCAACCCCGGGCAAAGGCGTCGCCGTGGCTCCTCCCAGCACGCTG
GCCGTAGCCCCTCGGCGGACCCAGCCAAAGCGTGAACAAAGCAGCCGCCA
CATCACTAGTCCCCAGGCGTCGGGCCAAGCCGGGCACGCCCCTCCCGTGG
ACAGTGTCCCCGAGGCGGGACCGGGAGGATCCCAGACCCCGGCTTTCCAC
CCAAATCTGTCTGCTCAGGCCATGCCGACGCTCGTGCCGCCACCTGTGCG
AAGTGCGGCGCCTTTGATGAGGGTGGAGAAAGGGGAGAAAGCGCTGGCGT
GGCTGCCCGAGAGCCAGCAGGCCTCCCTACCACCATCATGTCCATCCGGA
GTGCGTGCAGGGCCTGGCCATAAAGCAGCAGGGAGGAAAGCAGCGGCCAC
CGCATCCTCGTCGTCGAGAAGGCCAGAGCCTTCCGCGCGTCTTCCTTGCC
CCTCCCTTGGGCCTCCGTTGCCCGCCCCGTCAACCACGCCGTCGGTGGAG
GAAAAAATTCGTCTTCAGATTGCCACGCTTCAGACCAAGGCTTTGTTGAA
ACAGCAGCGACGAAACAGACAGGACGGACGGCCAGATATGGCAAAATAA

protein sequence of rna6167

>rna6167-protein ID=rna6167-protein|Name=rna6167|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
TMHSQGQQPHPHVGIPGGTAGLSQGPRPAPPTAQASSTTGGIPPGAGGLD
FSALLNQMGGGGGGGGGGGTSGRGFSPPQAEAELTEDELVQQAIERSLRE
T

mRNA from alignment at CM002467.1:753628..754715-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6167 ID=rna6167|Name=rna6167|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp|location=Sequence derived from alignment at CM002467.1:753628..754715- (Nannochloropsis gaditana)
GACCATGCACTCTCAAGGCCAACAACCCCATCCCCACGTGGGAATACCGG
GAGGAACTGCTGGACTCTCCCAAGGTCCCAGGCCCGCTCCTCCAACAGCA
CAGGCTTCCTCCACCACTGGGGGTATACCCCCTGGGGCGGGAGGGCTTGA
CTTCTCGGCCTTGCTGAATCAGATGGGGGGAGGGGGAGGGGGAGGGGGAG
GGGGAGGGACCAGTGGAAGGGGGTTTTCTCCTCCGCAAGCGGAGGCCGAG
CTGACGGAGGACGAATTGGTGCAGCAGGCGATTGAAAGGTCGCTGAGAGA
GACGTGAAAAAAAGGCGAAGAGGCGGGGAGGGAAAGGGTCGGCAAGGGTC
TGGCCCCGTCAGCCGTGAAGTGGCATCGTCAGAGTGGTGAAGAAAATGTT
GAACGTCCATCATGAACATAAGTCAAGCGCGTTTCTCGCATCTCCATCCT
GGAGAGAACCGATACCTTTGCATGGCCCGTATAATTTAAGGCACGATTTG
GAGGAAAATGTGATCAAGTCGGTCCCATGCCGTTCCGATTAATTTTCTTT
GCGGCTTCCTGGATTCTGTCGTCTGCCCATCTTATCGAGGGAAAGTGCAG
GAAGGTGTGCTTTCCTCCATGCCCGGCTCTGAAGCCAAAATAGATTTCCC
CAGAAGAGGAATCAGGGGCTTCATTGCCTGACTGACTGGGTAGGCTTAAG
GAGATTTGTACATGTGTGTGTCAGAAGGGTGGGAGAGAAGGAGTCGCGGG
AAAGTCTTCCCTCCCCACATGCCCTGAACATGCACGCGGATCAGCCAGGG
ACACGCAGGCCTCTATGCCCGGACAAATAAGAGGCTTTCATGCGTGAGTA
ACAAAGAAAGATGCATTTAGTTGAGAAGAATAAATATAGATGTAGGAGAA
ACGACGAAAAGACGATCCGAGGTTGGATTCAGGAGGAGGAAGGGGGGGGG
AGGTCATGGGGGCGAGGGCAAAGGTCGGGTACAGGAGGAGCACATGGTTC
TTTCCCTCCTCCAAAATTTTCGATAGCTGGGAGAACATTGAATAAAGAGA
GCGATCACCTAAAAAATGAAGGGAAAAGGAAGCACGCA

Coding sequence (CDS) from alignment at CM002467.1:753628..754715-

>rna6167 ID=rna6167|Name=rna6167|organism=Nannochloropsis gaditana|type=CDS|length=306bp|location=Sequence derived from alignment at CM002467.1:753628..754715- (Nannochloropsis gaditana)
ACCATGCACTCTCAAGGCCAACAACCCCATCCCCACGTGGGAATACCGGG
AGGAACTGCTGGACTCTCCCAAGGTCCCAGGCCCGCTCCTCCAACAGCAC
AGGCTTCCTCCACCACTGGGGGTATACCCCCTGGGGCGGGAGGGCTTGAC
TTCTCGGCCTTGCTGAATCAGATGGGGGGAGGGGGAGGGGGAGGGGGAGG
GGGAGGGACCAGTGGAAGGGGGTTTTCTCCTCCGCAAGCGGAGGCCGAGC
TGACGGAGGACGAATTGGTGCAGCAGGCGATTGAAAGGTCGCTGAGAGAG
ACGTGA

Synonyms

Publications