rna6158, rna6158 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6158
Unique Name	rna6158
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1227
Alignment location	CM002467.1:736222..737858 -

Link to JBrowse

Properties


Property Name	Value
Product	Galactose oxidase/kelch, beta-propeller
Orig transcript id	gnl\|cribi\|Naga_100427g2.10035.mrna
Orig protein id	gnl\|cribi\|Naga_100427g2.10035
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:736222..737858 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100427g2	gene5949	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6158	rna6158-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24531.1	cds6143	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:736222..737858-
coding sequence from alignment at CM002467.1:736222..737858-

mRNA sequence

>rna6158 ID=rna6158|Name=rna6158|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp
ATGGATTTCGATAGCGATCGCGTCACAGTAGTAAATACGAACCCGCAATA
CACGGGCGCAGCGCAGGTCGTAGACGAGTCTCTCTTCGAGAAGGAACGGG
CCCGCAACAGTTTTCGGGAGTTCGTCCGCAATTTCCGCCTCGGGTCGGAC
TTTTTGTACCGGAACCAACTCCTACAGCGGTACCGACGGGGTCAGTACTG
GTTGGAAATTAATATTGGTCATCTGCATGACTACGAAGCCCGCCTCTTGA
AGCACCTGCAGGACCAACCCGCGGAGTACCTCCCCGTCTACGAGAAAGGG
GCGCGGGAAGCCCTTTCCCAGCTCCTGCTCGAGGCCCCGGTGGGGGGAGG
GATGGAAGGAAGGGAGGAGCGGGAGGAGGGGATGGAAGGGGGGGTCGCTG
ACATCCAACTGACCTTGAAGAGCGAGCAAGTCCCGCGGCCGCTGCGTCAG
CTGGCGGCGGGAAACGTGGGAAGGTTAGTTAAGGTGTCGGGTATCATCAC
AGGCGCCTCGGCCGTGCGGGCGCGGGCGGTGGCCGTTCGTGTACAATGCT
CCCAGTGTCATTTGGTCAAGGTGATTCCCGCCCAGAGTGGCTTCAGTGGG
ATCCAGCTCCCTACCTACTGCGAGGGCGACGATCCCAACGCCATGGTGGG
CGAGGGCGGGGCGGAGGCAGGGGCCGGGAAGTGCAAGAGTCGGAACTACG
TGATCCTGGCCGACGAATCCGTGTACATTGACCAACAACCCTTGAAACTC
CAAGAGAGTCCAGAAACGGTCCCCACGGGCGAGATGCCACGTTCCATCTC
CCTGTCCTGCGAACGTTACCTTGCCGACCGAGTCGCCGCCGGAACACGCG
TGAGCATCATTGGGATTTTTTCCACCTTCAGTCACATGGCAGCCCGGGGC
ACGGCGGCGAGCCACGCCGTCAAGAGTGCGTACATCCGGGTAGTTGGCTT
GGAAGTGGAGGTGGAAGGGGCCGGCCGGGCTTCCACCTCCTTCACCCCCA
AGGAGGAGGAGCTTTTCGTCTCCATGGCCCGCCAGCCCGACATATACCAG
AAGCTGTCGAGCAGCCTGGCTCCCTCTATCTCGGGGGAGTATACCGTAGA
TATCAAGAAGGCGCTCGCCTGCCAACTTTTAAGCGGGTCCCGCAAGACTT
TGCCCGGTGAGGAAGGACGGAGGGAGGGGTCGAGGAGGGGAGGGAGGCAG
GGCGTTCGGTGTCGTGACCTGGCTTAA

protein sequence of rna6158

>rna6158-protein ID=rna6158-protein|Name=rna6158|organism=Nannochloropsis gaditana|type=polypeptide|length=490bp
MRNVPLLAFLLYRSASSLPTWWPVSVPQGDLRPPPTMSAITGAFANGTKF
LLYGGCTSSCCFSPVDAHWELSLSPDLKEGSWKQHTGLRSDGGTDNMGNP
VSSHPSSAPSARFGAASAVDKEDDVLYAFGGQDSSQAFLSDMWAYNAMSS
EWREIPASDRSRTDEDVWPTPRAAASLSVVADEAVGKVLVLVGGFGKVGA
EDNQVWAMRLGAQARQKTEGRPVDQDLLVSEGWIRLRPEQMESGVGKESH
PSSYSAAYGDEEIKNIPFPPTRRSSLASSVNFPARWHHVAVPSTSTGATP
SPSSSPPSSSKAGLILVGGVDAMGEDRNEVYLMTFDWHRRTYAWRVLAMG
TADDESITRLPVRHGHVALHSSSPSFPSFRIFGGLNTTHDTLPSSFLATT
FRFDLPPIERWSKEDFPSSPGARAYAGVGHGEKHSIVVGGFAGFTGDTDD
RLLDDVWVFSHGEEVEQLQMALTAGGDKEGWNMKGRHLRT

mRNA from alignment at CM002467.1:736222..737858-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6158 ID=rna6158|Name=rna6158|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp|location=Sequence derived from alignment at CM002467.1:736222..737858- (Nannochloropsis gaditana)
ATGCGGAATGTCCCTCTCCTCGCTTTTCTCCTTTACCGTTCGGCGTCATC
TCTTCCTACATGGTGGCCGGTCTCAGTACCTCAAGGAGACCTTCGTCCTC
CCCCCACCATGTCTGCCATAACGGGGGCGTTTGCCAACGGCACGAAATTT
CTTCTTTACGGAGGGTGTACCTCATCGTGTTGCTTCTCCCCCGTCGATGC
GCATTGGGAGCTTAGCCTCTCGCCAGACCTGAAAGAAGGATCATGGAAGC
AACACACAGGTCTCCGCTCCGATGGAGGGACGGATAATATGGGCAATCCC
GTGTCCTCGCATCCTTCGTCTGCTCCCTCCGCCCGTTTTGGTGCGGCCAG
TGCGGTGGATAAGGAGGACGACGTGCTGTACGCGTTCGGGGGCCAGGACT
CCTCCCAAGCATTTTTGAGCGATATGTGGGCATACAACGCCATGTCATCG
GAGTGGCGTGAAATCCCAGCATCGGACAGAAGCCGCACGGACGAAGATGT
GTGGCCTACCCCGCGTGCGGCGGCGTCCTTGAGCGTGGTGGCAGACGAAG
CGGTTGGGAAAGTCCTTGTATTGGTGGGAGGGTTCGGTAAAGTCGGGGCG
GAGGACAACCAGGTGTGGGCGATGCGACTTGGTGCACAGGCGCGCCAAAA
GACTGAGGGGAGACCTGTGGATCAAGACTTGTTGGTTTCGGAAGGGTGGA
TCCGTTTAAGACCGGAACAAATGGAGTCGGGGGTAGGAAAGGAGTCGCAT
CCCTCCTCTTACTCTGCTGCGTATGGGGATGAAGAGATAAAAAACATTCC
TTTTCCTCCGACCCGTCGATCTTCCCTCGCCTCGAGCGTGAATTTTCCAG
CCCGGTGGCATCATGTCGCGGTCCCGAGCACCTCGACAGGCGCCACGCCC
TCCCCCTCGTCCTCCCCCCCTTCCTCGTCGAAGGCCGGGCTCATCCTCGT
GGGCGGCGTGGACGCGATGGGAGAGGATCGAAACGAGGTTTATTTGATGA
CGTTTGATTGGCACAGGCGGACATACGCGTGGCGCGTGCTGGCAATGGGA
ACGGCGGACGACGAGTCAATCACCCGTCTTCCTGTGCGACAGTGAGTGGT
CGAAAAGGGGGGAAGGGAATCGCAAAGGGGTGTGTCACTGCGGCAAATTT
ATCCGTCTTGAGTATTTTTTGAGCTGATTGAAGAGGTATAGATGCATGAC
AAGTCCCCTACAACACGTTCTCACTGTCTTTTTCCTCCATCTCCCCACAT
TATAGCGGTCACGTCGCACTTCATTCCTCTTCCCCTTCATTCCCTTCCTT
CCGCATCTTTGGTGGCCTCAATACCACCCACGATACCCTTCCTTCTTCCT
TTCTTGCGACGACTTTCCGATTCGATTTGCCTCCAATCGAGCGATGGTCT
AAAGAGGATTTCCCCTCATCCCCAGGGGCTCGCGCGTACGCGGGGGTTGG
ACACGGCGAGAAGCATTCAATTGTCGTGGGTGGTTTTGCGGGGTTCACGG
GAGATACAGACGATCGATTGTTGGATGATGTATGGGTATTTTCTCACGGA
GAAGAGGTGGAGCAGCTTCAAATGGCATTGACAGCAGGAGGGGACAAGGA
AGGGTGGAATATGAAAGGGCGACATCTAAGGACCTAA

Coding sequence (CDS) from alignment at CM002467.1:736222..737858-

>rna6158 ID=rna6158|Name=rna6158|organism=Nannochloropsis gaditana|type=CDS|length=2946bp|location=Sequence derived from alignment at CM002467.1:736222..737858- (Nannochloropsis gaditana)
CGGTCACGTCGCACTTCATTCCTCTTCCCCTTCATTCCCTTCCTTCCGCA
TCTTTGGTGGCCTCAATACCACCCACGATACCCTTCCTTCTTCCTTTCTT
GCGACGACTTTCCGATTCGATTTGCCTCCAATCGAGCGATGGTCTAAAGA
GGATTTCCCCTCATCCCCAGGGGCTCGCGCGTACGCGGGGGTTGGACACG
GCGAGAAGCATTCAATTGTCGTGGGTGGTTTTGCGGGGTTCACGGGAGAT
ACAGACGATCGATTGTTGGATGATGTATGGGTATTTTCTCACGGAGAAGA
GGTGGAGCAGCTTCAAATGGCATTGACAGCAGGAGGGGACAAGGAAGGGT
GGAATATGAAAGGGCGACATCTAAGGACCTAAATGCGGAATGTCCCTCTC
CTCGCTTTTCTCCTTTACCGTTCGGCGTCATCTCTTCCTACATGGTGGCC
GGTCTCAGTACCTCAAGGAGACCTTCGTCCTCCCCCCACCATGTCTGCCA
TAACGGGGGCGTTTGCCAACGGCACGAAATTTCTTCTTTACGGAGGGTGT
ACCTCATCGTGTTGCTTCTCCCCCGTCGATGCGCATTGGGAGCTTAGCCT
CTCGCCAGACCTGAAAGAAGGATCATGGAAGCAACACACAGGTCTCCGCT
CCGATGGAGGGACGGATAATATGGGCAATCCCGTGTCCTCGCATCCTTCG
TCTGCTCCCTCCGCCCGTTTTGGTGCGGCCAGTGCGGTGGATAAGGAGGA
CGACGTGCTGTACGCGTTCGGGGGCCAGGACTCCTCCCAAGCATTTTTGA
GCGATATGTGGGCATACAACGCCATGTCATCGGAGTGGCGTGAAATCCCA
GCATCGGACAGAAGCCGCACGGACGAAGATGTGTGGCCTACCCCGCGTGC
GGCGGCGTCCTTGAGCGTGGTGGCAGACGAAGCGGTTGGGAAAGTCCTTG
TATTGGTGGGAGGGTTCGGTAAAGTCGGGGCGGAGGACAACCAGGTGTGG
GCGATGCGACTTGGTGCACAGGCGCGCCAAAAGACTGAGGGGAGACCTGT
GGATCAAGACTTGTTGGTTTCGGAAGGGTGGATCCGTTTAAGACCGGAAC
AAATGGAGTCGGGGGTAGGAAAGGAGTCGCATCCCTCCTCTTACTCTGCT
GCGTATGGGGATGAAGAGATAAAAAACATTCCTTTTCCTCCGACCCGTCG
ATCTTCCCTCGCCTCGAGCGTGAATTTTCCAGCCCGGTGGCATCATGTCG
CGGTCCCGAGCACCTCGACAGGCGCCACGCCCTCCCCCTCGTCCTCCCCC
CCTTCCTCGTCGAAGGCCGGGCTCATCCTCGTGGGCGGCGTGGACGCGAT
GGGAGAGGATCGAAACGAGGTTTATTTGATGACGTTTGATTGGCACAGGC
GGACATACGCGTGGCGCGTGCTGGCAATGGGAACGGCGGACGACGAGTCA
ATCACCCGTCTTCCTGTGCGACACGGTCACGTCGCACTTCATTCCTCTTC
CCCTTCATTCCCTTCCTTCCGCATCTTTGGTGGCCTCAATACCACCCACG
ATACCCTTCCTTCTTCCTTTCTTGCGACGACTTTCCGATTCGATTTGCCT
CCAATCGAGCGATGGTCTAAAGAGGATTTCCCCTCATCCCCAGGGGCTCG
CGCGTACGCGGGGGTTGGACACGGCGAGAAGCATTCAATTGTCGTGGGTG
GTTTTGCGGGGTTCACGGGAGATACAGACGATCGATTGTTGGATGATGTA
TGGGTATTTTCTCACGGAGAAGAGGTGGAGCAGCTTCAAATGGCATTGAC
AGCAGGAGGGGACAAGGAAGGGTGGAATATGAAAGGGCGACATCTAAGGA
CCTAAATGCGGAATGTCCCTCTCCTCGCTTTTCTCCTTTACCGTTCGGCG
TCATCTCTTCCTACATGGTGGCCGGTCTCAGTACCTCAAGGAGACCTTCG
TCCTCCCCCCACCATGTCTGCCATAACGGGGGCGTTTGCCAACGGCACGA
AATTTCTTCTTTACGGAGGGTGTACCTCATCGTGTTGCTTCTCCCCCGTC
GATGCGCATTGGGAGCTTAGCCTCTCGCCAGACCTGAAAGAAGGATCATG
GAAGCAACACACAGGTCTCCGCTCCGATGGAGGGACGGATAATATGGGCA
ATCCCGTGTCCTCGCATCCTTCGTCTGCTCCCTCCGCCCGTTTTGGTGCG
GCCAGTGCGGTGGATAAGGAGGACGACGTGCTGTACGCGTTCGGGGGCCA
GGACTCCTCCCAAGCATTTTTGAGCGATATGTGGGCATACAACGCCATGT
CATCGGAGTGGCGTGAAATCCCAGCATCGGACAGAAGCCGCACGGACGAA
GATGTGTGGCCTACCCCGCGTGCGGCGGCGTCCTTGAGCGTGGTGGCAGA
CGAAGCGGTTGGGAAAGTCCTTGTATTGGTGGGAGGGTTCGGTAAAGTCG
GGGCGGAGGACAACCAGGTGTGGGCGATGCGACTTGGTGCACAGGCGCGC
CAAAAGACTGAGGGGAGACCTGTGGATCAAGACTTGTTGGTTTCGGAAGG
GTGGATCCGTTTAAGACCGGAACAAATGGAGTCGGGGGTAGGAAAGGAGT
CGCATCCCTCCTCTTACTCTGCTGCGTATGGGGATGAAGAGATAAAAAAC
ATTCCTTTTCCTCCGACCCGTCGATCTTCCCTCGCCTCGAGCGTGAATTT
TCCAGCCCGGTGGCATCATGTCGCGGTCCCGAGCACCTCGACAGGCGCCA
CGCCCTCCCCCTCGTCCTCCCCCCCTTCCTCGTCGAAGGCCGGGCTCATC
CTCGTGGGCGGCGTGGACGCGATGGGAGAGGATCGAAACGAGGTTTATTT
GATGACGTTTGATTGGCACAGGCGGACATACGCGTGGCGCGTGCTGGCAA
TGGGAACGGCGGACGACGAGTCAATCACCCGTCTTCCTGTGCGACA

Synonyms

Publications