rna6155, rna6155 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6155
Unique Name	rna6155
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2932
Alignment location	CM002467.1:729281..731683 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100175g7.9489.mrna
Orig protein id	gnl\|cribi\|Naga_100175g7.9489
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:729281..731683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100175g7	gene5946	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6155	rna6155-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24534.1	cds6140	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:729281..731683+
coding sequence from alignment at CM002467.1:729281..731683+

mRNA sequence

>rna6155 ID=rna6155|Name=rna6155|organism=Nannochloropsis gaditana|type=mRNA|length=2932bp
TCCGCCTGAACATACACAGGAAATCGGCACGTTTTCGTCTAAAGCTTCAA
TTGCAAATGGGGAAGAGAGACAAAAAACGACGCCGTGATTACTCTTCCTC
CTCTTCCTCCTCTTCCTCCTCCTCGTCTTCCTCAGGGGGGGAGGAAGATG
AAAAAAATCACCGTAAAAGGAAACAAAAGCACGAAAAAAAGAAACATACG
CACAAGAAGAAGCAGAAAAAAGCGATGAAAGGCAAGCGCAAGTCTAAGGA
GCCCCAAAAACCACAAACACATGACAAGGAGGACGTATCCCAGCCCGCTC
AACGCACGATGGCCAGCACCTCCCTTCCACCACCTTCACCCTCAACGACT
TCCACAATTCCTACTTCTTCAGCTCCTCGCCGTGAAGCCATGGCACCTAT
GTCTTTTCAAGCCTACCAAGAGCAACAGGCCCTTGTCCGGGAGGTGTACG
ACGAGGACACTGGCCGAGTCCGCTTGGTGAGAGGGACTGGCGAGATCATT
GAACGCATTGTGAGCAGAGAAGAGCAGCGGTCGATCAATCGACAAGCAAC
TGAGGGGGATGGACGAAGTTTTCAAACTCAAGTCAGGCGGGGATGGGGGA
CCCGGTAGCGGGGAAAAGAAAGGGTAAAGAGATAGAAATTGTGCCAGAGG
AGTAGGCCCAGGAAGCAGAACGAACCGCACCGTGCACGCGGCCAAAGAGC
AAAGATAGCCTTTGAAGTGGGGGCCACGGGGCGTCACTGTTTGGAAAGAG
GAAGCAGTGTCGTGGCCGGACGGTGATTGTCAAGTCGGGCCGCTTGGCAT
GGTGATGCTGGCGACTCATGGCCGAGGATGACAAGGGGAAGGGAGGCAGG
AAGGAGGGTACTGGACGGAAGGTGTTGCAAGGGAACAGATCTAGGCCAGA
CGCGGGGGCAGGAGGGGAAGCAAAGGGAATGGAAAAGTAGACCTCTGTCT
CCCCCCGCCTAGGACAGGGTGGGGATAGAGCGTCCCTCCTGTCTTTCTTC
CCTCTGCCCCATACTCCCTTCCTTCCTCAGGGAGGGCAATGATTGATGTG
AATGGGAACGACGGCGTCCCGGGAGCCCCTCCCTGCTTTTGGCACGCTCA
TGCTTGTCCGAGCGTCCAACCAAGTGTCCGCAGTAAGGGATGTAATGCCT
GTTCGTTGATTGGCCTGGAAACGCTCTCCGGGAAATCGACGCCGCTCTTG
GGCTCACGTTCCAAAATCCCCCCCGCTCGATCACAGGGTCAGCCCCGGTC
CGGCCAGAAGGAGCATGGCCGTCCACCCCACGCCGTCATGTGCGGGTCCA
CATACCCCCTCCCCGCCCCTCCCTCCTTGCCCATCGACCGGCACTCCTTC
CTCTCCCGGCCTCCGGATCATGGCATCGCTCGAGCCCTCACCTGCCTTCC
GCCTCTTCGGGAACCTCCTCCTTCTCTCCCTCCTCTCGACCGTCGCCCAC
GCCTTCCTTCCCCCGGCCCCTTCCTCCTCCTCCCTGTCCTGCACTCCCTT
CCCTGCCTTCAACCCCCAAACCCGCTCCCAGTCTCTTTGTCCTCCTCCCT
TCCCCTTCACCGCCCTCTGCCGTTCCTCCTCCCCGTCCTCCACCTCCCCA
TCCTCCTCCTCTTCTTCCCTCGAGGAAATCCGAAAGCTCCGAGCCTCCGT
GATCAAGGCGGAGCTCGGGAGCCTAGGTGTCAGCACGGCCGGCATCGTGG
ACAAGGAGGAGCTCGTTGCCCTTCTTCTCCACCACCGGACCCATTCGCCG
GAACGGAGAGAAGGCACGTCAGAGAAGCGGACAGAGGGCCAGGGAGGCCG
AGAAGCGCCACCACTGTACACGGCCCGGGTTAAATTTCGGCAGAAAACGC
CGCCTTCCACCTTACCGGGGGGGGGACAAGCAGGGCCGGGGCCGAAAAGC
TACGTGTGTGTGGACCTGTGGATCAAGAATGAGAAATATGAGTTCTTGAT
CGATTCGGGGGCGACGCCGACCATCATCACCGAGCGGACCCGGAGCCGTT
TGAACGTCCGGGAATTGGCCGGCGGGCAACGGATAGAGGGCGTAACGGCT
ACCGGGGGGGGAGCGGCTCCGCGGGTCATGCTGGAAGAGGTCTCCCTGCT
CTCACCGACCGAGCGGGGGAGGGCAGGGGAAGGGGGAGGTATGGTGAACA
TGGACGCGTTGGTGATGGGTAATGAGGGAGTCTTGCCTCCCGGTGTAGAC
GGGTTGTTGGGGGTGGTGTGGATGCGGTATTTTGGCCTTGTGGATTTTGA
CTGGGCGAGCCAGTCCTTGACGGTTTACCCCTACGACGTGCGGGATAGGA
CGAGTGGCAGCGGGGACTTGGGCCTCGTTTTGGAAACGCCCAGCCCCAGC
CTGCTGGCCCGAGGCGTGAACATGCGACAGGACCCCATGTCAGGCATTTA
TTTTGTGAATTTATTCCTGACGCCGCCGGGAGCCAGTCCTCCCGTGCCCG
CAATTGTGGATTTGGGCGCCGGGCTCTCGATGGTGAATTGGAGGGCGGCC
AAACAGGCCGGAGTGGAGAGAGAAAGCAGCAGTCGGGTCGTGCGAAACGC
CATGAGCGTGTGGGGTATCGATGGGACCACGTTGCCCGTCGATCTCTGTG
ATTTTGAGGCATTGTCCCTAGAAAACGGCGTGACTTTGAACAGGAAACGT
ATCGGGGTCGCGGACCTGCCTGCATTTGCTCTGATCGGGTATGGATCTAA
GCCGGTGGGAGTGGTGGGCATGGACGTTTTGGGAGGGACAGACCCGAACA
ACCGAAGGATAGTTTTCGACTTTAGGAGAAGCATGTTGTACATGATGTGA
TGGACATAAGAGCAGGAGGAAAAAACAAAGAGTGGATCAAAATATCCATT
CATAGATCTTGCTTCAGTGTTTTTTATTTAAAATCACGGAAAGTGCTCGG
ATGTCTTTCAATTTTCCGTTTGCATTTTTGGG

protein sequence of rna6155

>rna6155-protein ID=rna6155-protein|Name=rna6155|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MARPTYVRLLPKHANVLLSAAVLLKCLTLALYLVALSHRNGWAHSKTTSS
NGLITYTGHWGLFVARFEGDYKVGGVEAHYTSTEPISGWASVAGGNNTVL
HKVRTVQAFSIIGGVVKILGTVSFVSGRFAARTAAQALALLDRGRLLNVS
FLLCNLLVTAVWASLPENAFFFFCNVYPQEEGVSSCISTHFTPPLGNSEW
EGRSYSFDLVVAATVCAVLAALAGALARRPLRKLAEEEDMGMGGGRDGRG
GTAGGARMLGGSAILDLDQPLLVEGGVGRDGGREGAGVAVNPSAPPSEKV

mRNA from alignment at CM002467.1:729281..731683+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6155 ID=rna6155|Name=rna6155|organism=Nannochloropsis gaditana|type=mRNA|length=2403bp|location=Sequence derived from alignment at CM002467.1:729281..731683+ (Nannochloropsis gaditana)
GTAAAAAGATCCTATCGTCTCACAAGATGGTTACAAGTGACTTTGGCGTT
GCCTTAAATCAGAACAAAGCCTTCAACCCGTCcgattcctttttttctcc
ttgcgcATTGATACAGCAAAAGACATGGCGCGGCCAACATACGTGCGCCT
CCTACCAAAACATGCCAACGTTCTCCTCTCAGCAGGTATTTGGGTTTTGT
GTCACTCGGGATGTACTATTCCCACGCGTCCTTTTCTCTGTGCAGGGTAG
TGGGGCATACGCGATTTGTGCGTTGCGACAATTCTACCCGCCTATCCAAC
TGATTCATGTCTTGCGCATCATGGAAAATGTTATTCGCCACTTGCAAGAC
ACATTGCCAAATGATAACTTAAAGTCGTTCTTTCTTTACCACAGCCGTTC
TCCTAAAATGTCTCACCCTGGCGCTCTACTTagtcgccctctcccaccgc
aaTGGGTGGGCGCATTCGAAAACGACGAGCAGCAATGGTTTGATCACATA
CACGGGTCATTGGGGCCTCTTTGTGGCCCGCTTTGAGGGGGACTATAAGG
tcgggggggtggaggcacATTATACAAGCACTGAACCCATTTCGGGCTGG
GCCTCGGTGGCAGGCGGCAACAACACGGTCTTGCACAAGGTAAGGACATT
GAGTGGGATGGGAGCCGTGTTGGGAAGAAAGCCAGAAgtgggcgacgggg
aggcaTTGGGCGGGATTGGGTAGCTCGTTCGCTCCAGGGAGCTGGGGGGG
AGATGCACACCGAGTGTGGGGAGACAAGgtggtcggggaggaggcggtgg
taaGAGCAATTTTAGGAGCAGGCTATCGCCGTGAGGTTATGAAAGAGGGg
cacggaggggaaaggaagaggggggagagggtgagagaaCACCGTGCAGG
GCCGACCGTATCGGGTTCGGTGTGGGGACCAGGGGGGAGAGCCACgcacg
gggaagaagaaagggcagggCGAGCCAGTGCATGCACCCGcccccatctc
ccctccttccctgtcggCCATCCCACAGGTTCGGACGGTTCAGGCCTTTT
CCATTATCGGGGGCGTGGTGAAGATCCTGGGCACCGTGTCCTTTGTCTCG
GGACGCTTTGCCGCCCGCACGGCCGCCCAAGCCTTGGCTTTGCTCGACCG
CGGTCGCCTTTTGAACGTGAGCTTTCTGCTTTGCAACCTGCTCGGTGAGA
atggcggggggaagggacaaggggggagtAAGGAATGGTCATCGTTCTTA
GGATGTCTCACACTGGTGCCCGtctctgcccttccctccatccctccctc
cctccctcccttcctccctcctcccttccttccctccttcccccccctcc
caagtCACTGCCGTATGGGCTTCTCTCCCCGAGAacgcttttttcttctt
ctgcaaCGTCTACCCTCAGGAAGAGGGCGTGTCCTCCTGCATCTCCACCC
ATttcacccctcccttgggAAACAGCGAATGGGAAGGTCGTTCCTATTCC
TTCGACTTGGTCGTTGCGGCCACGGTGTGTGCCGTCCTAGCCGCCCTGGC
AGGTGCCTTGGCCCGAAGACCGTTACGAAAattggcggaagaggaggaca
tggggatggggggcgggcgggacggaaggggggggacggcggggggTGCA
AGGATGCTCGGAGGCTCGGCAATATTGGACTTGGACCAACCCTTGCTGGT
AGaagggggagtggggagggatggagggcgagagggagcaggcgtgGCCG
TGAATCCCTCCGCACCGCCCAGTGAGAAAGTGTGAACgtctgaaggaggg
ggaggccaggagCGAGGACAGGCAGgcttggggggaaggagcaggaggag
ggagggagagagggagggacaaagggagggcgggtgcttggtggggaggg
aggcggcgtgCCTCCTGCCGTGTcgatggagcaggaggatggcgggTGTA
CCCCTGTTCAGTCCTTTGGTCTCGACGAGGGGGTGTAACATTTGGGCGGG
AAAAATGCGTGAAAACTTTGGACAAATCGTGAGCCCACGGGCGTTTGGAA
CTTCCAAGGTGCCTGTTGTTACGCTGTGGGGTATAGTTGGATTGATATGA
TGCGGGGGAAAATGCCGGAATGGCACGCTTGTCTGCACGGCCCCGGTTTC
GGTTTCGACGGCTGTTGCCAGGCATGACACTTCGCCGCGAAGACTTTTAA
CGAAGTTGTAACGGGTTGTGAAAATTTTACATTTCTGGGAAAGATTTGAC
ACCCCCGCCTTGCCCGTGCGCACATGGCAAGTTAAAATATGTCACCAAAG
ATGCAAGTATTCGCATTGACTACATGGTTGACGCGCTCCCGGAGAGGCCG
CTCGGTGGTGGTGTCTTGCCTGATCCAGTCGAACACTTTCTACTCCAGTA
TTT

Coding sequence (CDS) from alignment at CM002467.1:729281..731683+

>rna6155 ID=rna6155|Name=rna6155|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at CM002467.1:729281..731683+ (Nannochloropsis gaditana)
ATGGCGCGGCCAACATACGTGCGCCTCCTACCAAAACATGCCAACGTTCT
CCTCTCAGCAGCCGTTCTCCTAAAATGTCTCACCCTGGCGCTCTACTTag
tcgccctctcccaccgcaaTGGGTGGGCGCATTCGAAAACGACGAGCAGC
AATGGTTTGATCACATACACGGGTCATTGGGGCCTCTTTGTGGCCCGCTT
TGAGGGGGACTATAAGGtcgggggggtggaggcacATTATACAAGCACTG
AACCCATTTCGGGCTGGGCCTCGGTGGCAGGCGGCAACAACACGGTCTTG
CACAAGGTTCGGACGGTTCAGGCCTTTTCCATTATCGGGGGCGTGGTGAA
GATCCTGGGCACCGTGTCCTTTGTCTCGGGACGCTTTGCCGCCCGCACGG
CCGCCCAAGCCTTGGCTTTGCTCGACCGCGGTCGCCTTTTGAACGTGAGC
TTTCTGCTTTGCAACCTGCTCGtCACTGCCGTATGGGCTTCTCTCCCCGA
GAacgcttttttcttcttctgcaaCGTCTACCCTCAGGAAGAGGGCGTGT
CCTCCTGCATCTCCACCCATttcacccctcccttgggAAACAGCGAATGG
GAAGGTCGTTCCTATTCCTTCGACTTGGTCGTTGCGGCCACGGTGTGTGC
CGTCCTAGCCGCCCTGGCAGGTGCCTTGGCCCGAAGACCGTTACGAAAat
tggcggaagaggaggacatggggatggggggcgggcgggacggaaggggg
gggacggcggggggTGCAAGGATGCTCGGAGGCTCGGCAATATTGGACTT
GGACCAACCCTTGCTGGTAGaagggggagtggggagggatggagggcgag
agggagcaggcgtgGCCGTGAATCCCTCCGCACCGCCCAGTGAGAAAGTG
TGAATGGCGCGGCCAACATACGTGCGCCTCCTACCAAAACATGCCAACGT
TCTCCTCTCAGCAGCCGTTCTCCTAAAATGTCTCACCCTGGCGCTCTACT
TagtcgccctctcccaccgcaaTGGGTGGGCGCATTCGAAAACGACGAGC
AGCAATGGTTTGATCACATACACGGGTCATTGGGGCCTCTTTGTGGCCCG
CTTTGAGGGGGACTATAAGGtcgggggggtggaggcacATTATACAAGCA
CTGAACCCATTTCGGGCTGGGCCTCGGTGGCAGGCGGCAACAACACGGTC
TTGCACAAGGTTCGGACGGTTCAGGCCTTTTCCATTATCGGGGGCGTGGT
GAAGATCCTGGGCACCGTGTCCTTTGTCTCGGGACGCTTTGCCGCCCGCA
CGGCCGCCCAAGCCTTGGCTTTGCTCGACCGCGGTCGCCTTTTGAACGTG
AGCTTTCTGCTTTGCAACCTGCTCGtCACTGCCGTATGGGCTTCTCTCCC
CGAGAacgcttttttcttcttctgcaaCGTCTACCCTCAGGAAGAGGGCG
TGTCCTCCTGCATCTCCACCCATttcacccctcccttgggAAACAGCGAA
TGGGAAGGTCGTTCCTATTCCTTCGACTTGGTCGTTGCGGCCACGGTGTG
TGCCGTCCTAGCCGCCCTGGCAGGTGCCTTGGCCCGAAGACCGTTACGAA
Aattggcggaagaggaggacatggggatggggggcgggcgggacggaagg
ggggggacggcggggggTGCAAGGATGCTCGGAGGCTCGGCAATATTGGA
CTTGGACCAACCCTTGCTGGTAGaagggggagtggggagggatggagggc
gagagggagcaggcgtgGCCGTGAATCCCTCCGCACCGCCCAGTGAGAAA
GTGTGAATGGCGCGGCCAACATACGTGCGCCTCCTACCAAAACATGCCAA
CGTTCTCCTCTCAGCAGCCGTTCTCCTAAAATGTCTCACCCTGGCGCTCT
ACTTagtcgccctctcccaccgcaaTGGGTGGGCGCATTCGAAAACGACG
AGCAGCAATGGTTTGATCACATACACGGGTCATTGGGGCCTCTTTGTGGC
CCGCTTTGAGGGGGACTATAAGGtcgggggggtggaggcacATTATACAA
GCACTGAACCCATTTCGGGCTGGGCCTCGGTGGCAGGCGGCAACAACACG
GTCTTGCACAAGGTTCGGACGGTTCAGGCCTTTTCCATTATCGGGGGCGT
GGTGAAGATCCTGGGCACCGTGTCCTTTGTCTCGGGACGCTTTGCCGCCC
GCACGGCCGCCCAAGCCTTGGCTTTGCTCGACCGCGGTCGCCTTTTGAAC
GTGAGCTTTCTGCTTTGCAACCTGCTCGtCACTGCCGTATGGGCTTCTCT
CCCCGAGAacgcttttttcttcttctgcaaCGTCTACCCTCAGGAAGAGG
GCGTGTCCTCCTGCATCTCCACCCATttcacccctcccttgggAAACAGC
GAATGGGAAGGTCGTTCCTATTCCTTCGACTTGGTCGTTGCGGCCACGGT
GTGTGCCGTCCTAGCCGCCCTGGCAGGTGCCTTGGCCCGAAGACCGTTAC
GAAAattggcggaagaggaggacatggggatggggggcgggcgggacgga
aggggggggacggcggggggTGCAAGGATGCTCGGAGGCTCGGCAATATT
GGACTTGGACCAACCCTTGCTGGTAGaagggggagtggggagggatggag
ggcgagagggagcaggcgtgGCCGTGAATCCCTCCGCACCGCCCAGTGAG
AAAGTGTGAATGGCGCGGCCAACATACGTGCGCCTCCTACCAAAACATGC
CAACGTTCTCCTCTCAGCAGCCGTTCTCCTAAAATGTCTCACCCTGGCGC
TCTACTTagtcgccctctcccaccgcaaTGGGTGGGCGCATTCGAAAACG
ACGAGCAGCAATGGTTTGATCACATACACGGGTCATTGGGGCCTCTTTGT
GGCCCGCTTTGAGGGGGACTATAAGGtcgggggggtggaggcacATTATA
CAAGCACTGAACCCATTTCGGGCTGGGCCTCGGTGGCAGGCGGCAACAAC
ACGGTCTTGCACAAGGTTCGGACGGTTCAGGCCTTTTCCATTATCGGGGG
CGTGGTGAAGATCCTGGGCACCGTGTCCTTTGTCTCGGGACGCTTTGCCG
CCCGCACGGCCGCCCAAGCCTTGGCTTTGCTCGACCGCGGTCGCCTTTTG
AACGTGAGCTTTCTGCTTTGCAACCTGCTCGtCACTGCCGTATGGGCTTC
TCTCCCCGAGAacgcttttttcttcttctgcaaCGTCTACCCTCAGGAAG
AGGGCGTGTCCTCCTGCATCTCCACCCATttcacccctcccttgggAAAC
AGCGAATGGGAAGGTCGTTCCTATTCCTTCGACTTGGTCGTTGCGGCCAC
GGTGTGTGCCGTCCTAGCCGCCCTGGCAGGTGCCTTGGCCCGAAGACCGT
TACGAAAattggcggaagaggaggacatggggatggggggcgggcgggac
ggaaggggggggacggcggggggTGCAAGGATGCTCGGAGGCTCGGCAAT
ATTGGACTTGGACCAACCCTTGCTGGTAGaagggggagtggggagggatg
gagggcgagagggagcaggcgtgGCCGTGAATCCCTCCGCACCGCCCAGT
GAGAAAGTGTGA

Synonyms

Publications