rna6135, rna6135 (mRNA) Nannochloropsis gaditana

Overview
Namerna6135
Unique Namerna6135
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationCM002467.1:664948..666777 +

Link to JBrowse

Properties
Property NameValue
ProductNAD(P)-binding domain protein
Orig transcript idgnl|cribi|Naga_100548g3.7180.mrna
Orig protein idgnl|cribi|Naga_100548g3.7180
GeneDVR
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:664948..666777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DVRgene5926Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6135rna6135-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24553.1cds6120Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6135 ID=rna6135|Name=rna6135|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGCACCTGCCTCTTTTTCCCCGCAGCACACCAAGGGACGCAAAAAAAG
AAAACGCGACGCGGCCAATTCATCCTCTTACTCACATACAAACGGTCGCA
ATGCCATTGGTGGGGTCCGCTCGATCACATCCGCTCATCGGAAACGCCCT
GTCTGCGTGACGCGGGACATCTTCACCCAGCTCTTAGCTCCCCTCTCCCC
CGCCGCCTTCGTGCGTGATCACTACGACCAAAAGATTCCATTAGTGGTAA
AAGGTCATGATTTTACAACCTTGTGCGAGCAAGGCCTTGAAAGTGGAGAC
ATTCGTGCCCTGTTGGAAGCTACGCCGAGTGAAAACATCAGCGTCTGGAC
CGTCTCTGGCCCCTCCCAACGCATCAACACCGCGCGAGTCCAAGACGCAG
GCAGCGCCATGGCCCTGTACGAAGCCGGACATAGCGTGAGAATATAA
back to top

protein sequence of rna6135

>rna6135-protein ID=rna6135-protein|Name=rna6135|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MKAVTVLPLFVACLVVKTTFSFLPCPLPMTRYATAKWFVPSFQVATPYQS
RSRLQMLHTSPVAGKPPSQLTVAVAGATGYIGKAVVRECVRRGYKTKAYV
REESIERAKSLDYLKGAEVIGGSLDDSAEVEAKLFQEPVDVVISCIASRS
GAPADAWKVDHQANVHLLDASLHAPTPAQHFVMLSAFCVRKPELVFQHAK
LKFENYLRGKQDEITSTIIRPTAFFKSVSGQLEIVQKGYPYVMFGDGEIC
KCNPISEADLAEYIVKSIDDQSMHHQVLDVGGPDEGLTPKRQAEILFEVV
GKEPRFIAVPIGLFDAIIGTIDFFAQFFDGAKDAAELARIGKYYAVEDML
ATGRGEQYGQITLREHFARIAKEGNEYDPYTTMFSSKKEA
back to top

mRNA from alignment at CM002467.1:664948..666777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6135 ID=rna6135|Name=rna6135|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp|location=Sequence derived from alignment at CM002467.1:664948..666777+ (Nannochloropsis gaditana)
CCTTTAAAAAGAGACCTTTACGTTTTTTTCTCTCACATTTACCCTCATGT
ACATGCATACCATGCAGCCATGAAGGCAGTTACAGTTTTGCCGTTGTTCG
TGGCCTGTTTGGTGGTCAAGACGACGTTCAGTTTTCTTCCCTGTCCGCTC
CCGATGACGCGGTAAGTGCACACTGGGAGCCTTGAAGACAATGATCCATA
TCGCAATGTGCACGCTTAAAAGGCATTTGGGATGCTAGAATTCTGCACGC
ACATGGATTAAAAGGCTACGTGAGGGGCTTACAGACGTGTCCGTCCATTT
GTATCTGGGGGGGCATCTTTTGGCACAAACTTGTACTactcccctcctgc
tcggTAGACGTTCCATTCCTTTTGGGCTATCAACATTTCACGTTTACGCT
TCGGAATTATCCAGATACGCCACTGCCAAATGGTTCGTGCCATCCTTTCA
GGTTGCTACGCCCTACCAATCGCGTTCTCGCCTGCAAATGCTGCACACAA
GTCCTGTGGCTGGCAAACCACCAAGTCAGCTCACTGTCGCTGTGGCGGGC
GCGACGGGTTATATTGGCAAGGCCGTTGTACGAGAATGCGTACGAAGAGG
ATACAAAACAAAAGCGTACGTGCGAGAAGAGAGCATAGAACGGGCAAAAA
GCTTGGATTATTTGAAAGGGGCCGAGGTCATTGGGGGCAGCTTGGATGAC
AGTGCTGAAGTTGAAGCCAAGCTTTTCCAAGAGCCCGTGGACGTGGTGAT
ATCCTGCATAGCCAGCCGAAGCGGTGCGCCCGCAGATGCCTGGAAAGTGG
ATCATCAGGCTAACGTGCATTTGCTGGACGCGTCCTTGCACGCTCCGACG
CCCGCTCAGCATTTCGTCATGCTCTCCGCTTTTTGTGTCCGCAAGCCCGA
GCTTGTCTTCCAGCATGCCAAGCTGAAATTTGAGAATTATTTACGGGGGA
AGCAGGACGAAATCACCTCTACCATCATTCGGCCCACGGCGTTCTTCAAA
AGCGTGAGCGGGCAGCTTGAAATCGTGCAAAAGGGCTACCCCTACGTCAT
GTTCGGGGACGGAGAAATTTGCAAGTGCAACCCGATCTCGGAAGCCGACC
TGGCCGAGTACATTGTGAAAAGCATCGACGACCAAAGCATGCACCACCAG
GTGCTGGATGTGGGCGGGCCGGACGAGGGATTGACCCCTAAGCGGCAGGC
GGAGATCCTCTTtgaggtggtggggaaggagccTCGGTTCATCGCCGTGC
CGATCGGCTTGTTCGACGCCATCATCGGGACCATCGActttttcgcgcaa
tttttcgaCGGCGCCAAGGATGCGGCGGAGCTAGCGCGCATCGGGAAGTA
CTATgccgtggaggacatgctggccactgggaggggcgagcaATACGGGC
AGATCACGCTGAGAGAACACTTTGCCCGGATTGCCAAGGAAGGCAATGAG
TACGATCCGTACACCACCATGTTTTCCtcgaagaaagaggcttgAGGGAT
GCCTTGGGGTCGCGTGGGAGGTGAAAAAGAAGCGATGGGAGCTGCCGTAA
TTGCTGTAAGCACAGTATCAAGAGCAAGCGGCTCCGATGCATGTGAACAC
AGCGTAAAAGTAATGAGATCCTAGGGACGAGCCAtgcttccctgcctttc
ctgaGGAAGCTCGATTGGATGCGCCGTGCTGGTCTTTCATAGGTTTGTCT
CCCCTCTACACTGCAGCTTGATTCGCTTCGTCTCGTGGCAATCGTACACA
CCGCATGTAGACATGGCTCCCTTCCACACAAccactctccttcctctcgc
agATTATCTACAATTCCAAGGCCCCCGACG
back to top

Coding sequence (CDS) from alignment at CM002467.1:664948..666777+

>rna6135 ID=rna6135|Name=rna6135|organism=Nannochloropsis gaditana|type=CDS|length=2346bp|location=Sequence derived from alignment at CM002467.1:664948..666777+ (Nannochloropsis gaditana)
ATGAAGGCAGTTACAGTTTTGCCGTTGTTCGTGGCCTGTTTGGTGGTCAA
GACGACGTTCAGTTTTCTTCCCTGTCCGCTCCCGATGACGCGATACGCCA
CTGCCAAATGGTTCGTGCCATCCTTTCAGGTTGCTACGCCCTACCAATCG
CGTTCTCGCCTGCAAATGCTGCACACAAGTCCTGTGGCTGGCAAACCACC
AAGTCAGCTCACTGTCGCTGTGGCGGGCGCGACGGGTTATATTGGCAAGG
CCGTTGTACGAGAATGCGTACGAAGAGGATACAAAACAAAAGCGTACGTG
CGAGAAGAGAGCATAGAACGGGCAAAAAGCTTGGATTATTTGAAAGGGGC
CGAGGTCATTGGGGGCAGCTTGGATGACAGTGCTGAAGTTGAAGCCAAGC
TTTTCCAAGAGCCCGTGGACGTGGTGATATCCTGCATAGCCAGCCGAAGC
GGTGCGCCCGCAGATGCCTGGAAAGTGGATCATCAGGCTAACGTGCATTT
GCTGGACGCGTCCTTGCACGCTCCGACGCCCGCTCAGCATTTCGTCATGC
TCTCCGCTTTTTGTGTCCGCAAGCCCGAGCTTGTCTTCCAGCATGCCAAG
CTGAAATTTGAGAATTATTTACGGGGGAAGCAGGACGAAATCACCTCTAC
CATCATTCGGCCCACGGCGTTCTTCAAAAGCGTGAGCGGGCAGCTTGAAA
TCGTGCAAAAGGGCTACCCCTACGTCATGTTCGGGGACGGAGAAATTTGC
AAGTGCAACCCGATCTCGGAAGCCGACCTGGCCGAGTACATTGTGAAAAG
CATCGACGACCAAAGCATGCACCACCAGGTGCTGGATGTGGGCGGGCCGG
ACGAGGGATTGACCCCTAAGCGGCAGGCGGAGATCCTCTTtgaggtggtg
gggaaggagccTCGGTTCATCGCCGTGCCGATCGGCTTGTTCGACGCCAT
CATCGGGACCATCGActttttcgcgcaatttttcgaCGGCGCCAAGGATG
CGGCGGAGCTAGCGCGCATCGGGAAGTACTATgccgtggaggacatgctg
gccactgggaggggcgagcaATACGGGCAGATCACGCTGAGAGAACACTT
TGCCCGGATTGCCAAGGAAGGCAATGAGTACGATCCGTACACCACCATGT
TTTCCtcgaagaaagaggcttgAATGAAGGCAGTTACAGTTTTGCCGTTG
TTCGTGGCCTGTTTGGTGGTCAAGACGACGTTCAGTTTTCTTCCCTGTCC
GCTCCCGATGACGCGATACGCCACTGCCAAATGGTTCGTGCCATCCTTTC
AGGTTGCTACGCCCTACCAATCGCGTTCTCGCCTGCAAATGCTGCACACA
AGTCCTGTGGCTGGCAAACCACCAAGTCAGCTCACTGTCGCTGTGGCGGG
CGCGACGGGTTATATTGGCAAGGCCGTTGTACGAGAATGCGTACGAAGAG
GATACAAAACAAAAGCGTACGTGCGAGAAGAGAGCATAGAACGGGCAAAA
AGCTTGGATTATTTGAAAGGGGCCGAGGTCATTGGGGGCAGCTTGGATGA
CAGTGCTGAAGTTGAAGCCAAGCTTTTCCAAGAGCCCGTGGACGTGGTGA
TATCCTGCATAGCCAGCCGAAGCGGTGCGCCCGCAGATGCCTGGAAAGTG
GATCATCAGGCTAACGTGCATTTGCTGGACGCGTCCTTGCACGCTCCGAC
GCCCGCTCAGCATTTCGTCATGCTCTCCGCTTTTTGTGTCCGCAAGCCCG
AGCTTGTCTTCCAGCATGCCAAGCTGAAATTTGAGAATTATTTACGGGGG
AAGCAGGACGAAATCACCTCTACCATCATTCGGCCCACGGCGTTCTTCAA
AAGCGTGAGCGGGCAGCTTGAAATCGTGCAAAAGGGCTACCCCTACGTCA
TGTTCGGGGACGGAGAAATTTGCAAGTGCAACCCGATCTCGGAAGCCGAC
CTGGCCGAGTACATTGTGAAAAGCATCGACGACCAAAGCATGCACCACCA
GGTGCTGGATGTGGGCGGGCCGGACGAGGGATTGACCCCTAAGCGGCAGG
CGGAGATCCTCTTtgaggtggtggggaaggagccTCGGTTCATCGCCGTG
CCGATCGGCTTGTTCGACGCCATCATCGGGACCATCGActttttcgcgca
atttttcgaCGGCGCCAAGGATGCGGCGGAGCTAGCGCGCATCGGGAAGT
ACTATgccgtggaggacatgctggccactgggaggggcgagcaATACGGG
CAGATCACGCTGAGAGAACACTTTGCCCGGATTGCCAAGGAAGGCAATGA
GTACGATCCGTACACCACCATGTTTTCCtcgaagaaagaggcttgA
back to top
Synonyms
Publications