rna6118, rna6118 (mRNA) Nannochloropsis gaditana

Overview
Namerna6118
Unique Namerna6118
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1401
Alignment locationCM002467.1:616061..618055 -

Link to JBrowse

Properties
Property NameValue
Productsulfate adenylyltransferase
Orig transcript idgnl|cribi|Naga_100462g3.1418.mrna
Orig protein idgnl|cribi|Naga_100462g3.1418
GeneATS
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:616061..618055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATSgene5910Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6118rna6118-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24572.1cds6103Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6118 ID=rna6118|Name=rna6118|organism=Nannochloropsis gaditana|type=mRNA|length=1401bp
ATGGCCATGGACTATTATGGAGACGATTCGTTCAAGCAAAAGCAAGAGCT
GGCGATGCCGCTGCTGGAGGAGCGTTCCAGGATCAAATGTGTCAAGTTTC
CGCTCGTCTACCACGTGCTTTTACCGCGGGCCATGCTGATTGAAGCCGTT
TCCCCGGGACCATGGCGTACGAAACGATTACATTTTGGCCCTTTCCCTGC
CTTCGCCGACGTACTTGAGGTTTTGCAAGTCCAATCATCGTCCGACGTGC
ACGCCTTGGGTGGGCAAGAGAGTCACAATTTCTGTGACAAGCAGGCCCCC
CCCGGCCTGGGCTATTTGCAAAGACACGATCGTCTGACGCATGTCAACGG
CCGAATTGTGCACTCCCTCAAGCACGTCCAGGAAATTCTCCTGGAAATGG
AAGAGGATGGTGCATGCGACAGCCGGGAAGCAAGAGATAAGGGTAGCGAG
GTGCGGATCCAGCTGCTTCGCAAGAAGAACCCATACGCAGTCTACATGGA
TGTGGATGACCCCGCCTCCCCCTCGACCTCGTCCTCCTTTTCCTCCTCCG
ACTCGTGCCATTCTTTTCACGAGGACAGCGGCCAAACTAGCTCGTTGCTG
GCCTTGGTCTTGTCCGGGGGGGGCTGCATTTCCTTTTCCCCCTCCTCTCC
CTCGTTCGCCTCCTTGGTCACGAGTGGCGCCGGCCCCGGCAGCAGCCGCC
GTCCTTGCCGAGTATCTTCGCTGGAATCATTACAGCCCTACGAGTCTTGG
GGGGACGAGGCCTCCCTCGAGCGCACCCACTACATGCCCCTGTGGTGCTT
CCCCCTCTTCCACTACCTAGTCCAGGCGGGGGACTCCCTGCCTTCCATCG
CGCGCACTTTCGGCGTGAGCGTGGACGTTTTGCGGAGGGACAACCGGGAC
AAATTCAGGTGCGACTTGGGGTGCACGTGTGCGGAAGGAAGGAAGACGGT
GTCGATGGAAGAGGGAGGGGAGGCGATCTACGCAGAAGACGCACTCCAGA
GCCGCGTGGTCGAAGTCGGGATGAGGCAGGGACTGGAAGAGGGAGAGGCA
TGTGGGAGGGAAAGGGGAGGGGAGGTAAGCGGCAATGGTAGAGGGAGGTC
GGTGGGATTTACTCGAATTCCGGGTATTGATGGATGGTTTCGGAGACCCG
ATCGTTGTCATGTAGGGATCTCTTCGGACACAAGCTTTCATGTGACACAC
ATGTACAAATCTTTCATGGATCGACGCCTGGTTGAAGTGTATTCTGCATT
CGCGGTCCTGTCGGCAATATATGCTATGCGGATTTTCAAGCTTCTGTGTG
CAGCCACACGTATAGAGGGAAGGAGGGAGGTAAATAGAGAGACGCCAAGA
CAGGGCGGAGGATGGGAATCAAAATTATATAAAATTTGCGCGAACGAATG
A
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protein sequence of rna6118

>rna6118-protein ID=rna6118-protein|Name=rna6118|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MFRVSLALLGLVATQTSAFVLPATRIARAPATSPTQLAATTMPADVKQQP
HGGKLVESMVEGAEAEAAKTRATQEIQLNDRQLCDVELIINGGFSPLTGF
MNEEEYKSVVETHRLPNGLLFGLPVVFDTDSEEVQPGASLLLKQGDRPIA
VFDVSAKYTPNKPLEALKCYGTSSLEHPGVQMIAMERGKYYLGGQLTGLN
LPVRDFNCKTPKEVRAGLPTGKDVVAFQCRNPVHRAHYELFTRALDAPNV
GKDGIVLVHPTCGPTQADDIPGIVRYRTYEVLKEETANPRIEWAYLPYSM
HMAGPREALQHMMIRKNYGCTHFIIGRDMAGSKSSVTGEDFYGAYDAQNF
AKSISKELGVDTVPSLDLVFTEEEGYVTAERAKEANLHIKKLSGTKFRQM
LRAGEDIPEWFAFKSVVQVLREN
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mRNA from alignment at CM002467.1:616061..618055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6118 ID=rna6118|Name=rna6118|organism=Nannochloropsis gaditana|type=mRNA|length=1995bp|location=Sequence derived from alignment at CM002467.1:616061..618055- (Nannochloropsis gaditana)
TGAGGACTCGCGCCCTATATGGGAACATTTGAGGACCTCACGGCAGTCTA
TCCATCCACGCACAGTTTGGATTGCTTCTGAGGCATGTTCCGAGTGTCCT
TGGCCTTGCTTGGCCTTGTCGCGACGCAGACAAGTGCCTTTGTTCTCCCC
GCTACGAGGATTGCCCGCGCCCCTGCGACCTCCCCCACTCAGCTTGCGGC
GGTAAGTACAAAGCCAGAGAAGTAGAGAGAACAACGTTGTGCGTGATGAT
CATCCACTATAAATTAGAATCTATAAGGTTGCCGGCTGGCATATCCTGTC
TTCTTGGGTATTTTTCTCCCTCTTGACTTCCTTTGGTTCACTAACTTCAG
CCTGACGGCAGGCGCAACGTGGAGTGTTTGATGGAGGAATGCGAAGTCGT
ACGAATACACTGTAGCGACCATTCCCCCCTTCTCCTTCCCTTTCGTTCAG
CGGTTTCCATGGATCTTTTTTTATCGCCTCTCACGCACCCCCCCCGGCTT
GGTCAACATTCTCATCCCACAGACAACCATGCCAGCCGACGTAAAGCAGC
AGCCCCACGGGGGGAAGCTCGTCGAATCCATGGTCGAAGGCGCAGAGGCG
GAGGCTGCCAAGACCCGAGCCACTCAGGAGATTCAGCTGAACGACCGGCA
GCTGTGTGACGTGGAGCTCATCATCAATGGCGGCTTCTCCCCGCTGACAG
GCTTCATGAACGAGGAGGAATACAAAAGCGTGGTGGAGACACACCGGCTG
CCCAACGGCCTCCTCTTCGGCCTGCCCGTGGTGTTTGACACGGACAGCGA
GGAGGTGCAGCCGGGCGCCTCCCTCCTTCTCAAGCAGGGAGACCGGCCCA
TCGCTGTCTTCGATGTCTCGGCCAAGTACACGCCGAACAAGCCCCTGGAG
GCACTCAAGTGCTACGGAACCTCCTCTCTGGAGCACCCGGGCGTGCAGAT
GATCGCCATGGAGCGAGGCAAATACTACCTGGGGGGTCAGCTCACGGGCT
TGAACCTCCCCGTCCGGGACTTCAACTGCAAGACGCCTAAGGAAGTGCGC
GCGGGTCTCCCCACGGGCAAAGACGTGGTGGCCTTCCAATGCCGCAACCC
CGTCCACAGGGCCCACTACGAGCTCTTCACCCGGGCCCTGGACGCTCCCA
ATGTGGGCAAGGACGGCATTGTCCTCGTGCACCCGACCTGCGGCCCTACC
CAGGCAGACGACATCCCCGGGATCGTCCGCTACCGGACCTACGAGGTCCT
GAAGGAGGAAACGGCCAACCCGCGCATCGAATGGGCCTACCTCCCCTACT
CCATGCACATGGCGGGCCCGCGCGAGGCGCTCCAGCACATGATGATCCGG
AAGAACTACGGGTGCACGCACTTCATCATCGGGCGCGACATGGCCGGGAG
CAAGAGCTCGGTGACGGGGGAGGATTTCTATGGTGCCTACGACGCGCAAA
ACTTCGCCAAGTCCATCTCGAAGGAGCTGGGCGTAGACACAGTGCCCTCC
CTGGACCTGGTTTTCACGGAGGAGGAAGGCTACGTGACGGCAGAGCGGGC
GAAGGAGGCGAACCTGCACATCAAGAAGCTCTCGGGCACGAAGTTCCGGC
AAATGCTGAGGGCGGGGGAGGATATCCCCGAATGGTTTGCCTTCAAGTCG
GTGGTCCAGGTGCTGCGGGAGAACTAAGACGGAGAGGGGGGGGAAGAGGG
GCGGGAAGCGTTGAAGGCCGACAGGGTCAGGCCGGGGAAAGAGGAGGGGG
AGGGGGGGGGAAGCGATGTGGGTTGGGGAGAATTGAGGACCAGAATTTTG
TGCGACGGTGTTTTATGGAATGAGGGAGGGAAGAATGTGATGAAGGAGAC
GAGGCCCATTTGATTGAGGCAGGCTGGTCAGAACAGCCCGAAGGGTGGAA
GGGGAGGGAGACAGGCAGGAGGGATCATCCCCGTGTGGAGAGCCCGTACT
GCCCTTTTTGGAAAAGCAACACCGACCACAGAGGCCCTGTTTGCA
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Coding sequence (CDS) from alignment at CM002467.1:616061..618055-

>rna6118 ID=rna6118|Name=rna6118|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002467.1:616061..618055- (Nannochloropsis gaditana)
ACAACCATGCCAGCCGACGTAAAGCAGCAGCCCCACGGGGGGAAGCTCGT
CGAATCCATGGTCGAAGGCGCAGAGGCGGAGGCTGCCAAGACCCGAGCCA
CTCAGGAGATTCAGCTGAACGACCGGCAGCTGTGTGACGTGGAGCTCATC
ATCAATGGCGGCTTCTCCCCGCTGACAGGCTTCATGAACGAGGAGGAATA
CAAAAGCGTGGTGGAGACACACCGGCTGCCCAACGGCCTCCTCTTCGGCC
TGCCCGTGGTGTTTGACACGGACAGCGAGGAGGTGCAGCCGGGCGCCTCC
CTCCTTCTCAAGCAGGGAGACCGGCCCATCGCTGTCTTCGATGTCTCGGC
CAAGTACACGCCGAACAAGCCCCTGGAGGCACTCAAGTGCTACGGAACCT
CCTCTCTGGAGCACCCGGGCGTGCAGATGATCGCCATGGAGCGAGGCAAA
TACTACCTGGGGGGTCAGCTCACGGGCTTGAACCTCCCCGTCCGGGACTT
CAACTGCAAGACGCCTAAGGAAGTGCGCGCGGGTCTCCCCACGGGCAAAG
ACGTGGTGGCCTTCCAATGCCGCAACCCCGTCCACAGGGCCCACTACGAG
CTCTTCACCCGGGCCCTGGACGCTCCCAATGTGGGCAAGGACGGCATTGT
CCTCGTGCACCCGACCTGCGGCCCTACCCAGGCAGACGACATCCCCGGGA
TCGTCCGCTACCGGACCTACGAGGTCCTGAAGGAGGAAACGGCCAACCCG
CGCATCGAATGGGCCTACCTCCCCTACTCCATGCACATGGCGGGCCCGCG
CGAGGCGCTCCAGCACATGATGATCCGGAAGAACTACGGGTGCACGCACT
TCATCATCGGGCGCGACATGGCCGGGAGCAAGAGCTCGGTGACGGGGGAG
GATTTCTATGGTGCCTACGACGCGCAAAACTTCGCCAAGTCCATCTCGAA
GGAGCTGGGCGTAGACACAGTGCCCTCCCTGGACCTGGTTTTCACGGAGG
AGGAAGGCTACGTGACGGCAGAGCGGGCGAAGGAGGCGAACCTGCACATC
AAGAAGCTCTCGGGCACGAAGTTCCGGCAAATGCTGAGGGCGGGGGAGGA
TATCCCCGAATGGTTTGCCTTCAAGTCGGTGGTCCAGGTGCTGCGGGAGA
ACTAAATGTTCCGAGTGTCCTTGGCCTTGCTTGGCCTTGTCGCGACGCAG
ACAAGTGCCTTTGTTCTCCCCGCTACGAGGATTGCCCGCGCCCCTGCGAC
CTCCCCCACTCAGCTTGCGGCGACAACCATGCCAGCCGACGTAAAGCAGC
AGCCCCACGGGGGGAAGCTCGTCGAATCCATGGTCGAAGGCGCAGAGGCG
GAGGCTGCCAAGACCCGAGCCACTCAGGAGATTCAGCTGAACGACCGGCA
GCTGTGTGACGTGGAGCTCATCATCAATGGCGGCTTCTCCCCGCTGACAG
GCTTCATGAACGAGGAGGAATACAAAAGCGTGGTGGAGACACACCGGCTG
CCCAACGGCCTCCTCTTCGGCCTGCCCGTGGTGTTTGACACGGACAGCGA
GGAGGTGCAGCCGGGCGCCTCCCTCCTTCTCAAGCAGGGAGACCGGCCCA
TCGCTGTCTTCGATGTCTCGGCCAAGTACACGCCGAACAAGCCCCTGGAG
GCACTCAAGTGCTACGGAACCTCCTCTCTGGAGCACCCGGGCGTGCAGAT
GATCGCCATGGAGCGAGGCAAATACTACCTGGGGGGTCAGCTCACGGGCT
TGAACCTCCCCGTCCGGGACTTCAACTGCAAGACGCCTAAGGAAGTGCGC
GCGGGTCTCCCCACGGGCAAAGACGTGGTGGCCTTCCAATGCCGCAACCC
CGTCCACAGGGCCCACTACGAGCTCTTCACCCGGGCCCTGGACGCTCCCA
ATGTGGGCAAGGACGGCATTGTCCTCGTGCACCCGACCTGCGGCCCTACC
CAGGCAGACGACATCCCCGGGATCGTCCGCTACCGGACCTACGAGGTCCT
GAAGGAGGAAACGGCCAACCCGCGCATCGAATGGGCCTACCTCCCCTACT
CCATGCACATGGCGGGCCCGCGCGAGGCGCTCCAGCACATGATGATCCGG
AAGAACTACGGGTGCACGCACTTCATCATCGGGCGCGACATGGCCGGGAG
CAAGAGCTCGGTGACGGGGGAGGATTTCTATGGTGCCTACGACGCGCAAA
ACTTCGCCAAGTCCATCTCGAAGGAGCTGGGCGTAGACACAGTGCCCTCC
CTGGACCTGGTTTTCACGGAGGAGGAAGGCTACGTGACGGCAGAGCGGGC
GAAGGAGGCGAACCTGCACATCAAGAAGCTCTCGGGCACGAAGTTCCGGC
AAATGCTGAGGGCGGGGGAGGATATCCCCGAATGGTTTGCCTTCAAGTCG
GTGGTCCAGGTGCTGCGGGAGAACTAAATGTTCCGAGTGTCCTTGGCCTT
GCTTGGCCTTGTCGCGACGCAGACAAGTGCCTTTGTTCTCCCCGCTACGA
GGATTGCCCGCGCCCCTGCGACCTCCCCCACTCAGCTTGCGGCG
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Synonyms
Publications