rna6107, rna6107 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6107
Unique Name	rna6107
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2233
Alignment location	CM002467.1:588586..590463 -

Link to JBrowse

Properties


Property Name	Value
Product	cdc37 protein
Orig transcript id	gnl\|cribi\|Naga_100062g25.918.mrna
Orig protein id	gnl\|cribi\|Naga_100062g25.918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:588586..590463 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g25	gene5900	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6107	rna6107-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24595.1	cds6092	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:588586..590463-
coding sequence from alignment at CM002467.1:588586..590463-

mRNA sequence

>rna6107 ID=rna6107|Name=rna6107|organism=Nannochloropsis gaditana|type=mRNA|length=2233bp
GTTCCGTTGCTTAGAAGGCAGTTTGAATCCACTCGCCACATGGGCAAAGT
TTATGTTCAGAGGCTCTTTCACCCCAAAACGATAACAGGAAAAGTAACCA
AGAATGGTTGTTAGATATTTTCGAGTTCATAAACATGGAATACGAATATT
GTGTATCACTCGCCAAATTTCTTGCAAATCGCCACTCTTCGTCGGGTTCT
CCCAGTTGGACATGAATGAAGTGAAGTGTCCTGCATTCCACCACTAAGTC
CCGCTGACTCCATTCGGCACGAGCAGTTTCATTACATGGCTATTCCCTGC
TTATGTCTGAAACACAGGAACGATGTACGCGACGGACTGTCCACAAAGGG
GGTATTATGATCCTGAGGCCGGGTTGCGTAGCTTTGGTCATCGGGCTTTC
GAATGCGACGAAGATGACAAGCACAGAAAGCGGCGCAATCAAACGTTACC
CGTGGCGTTAAAGTGGGCCATGATAGTTTGTTTTGCGTGGGGCTTATTTG
TTGTGGTAGTTGGAATGGCCAGTCGTACCTCTGGAGCTAACGTAAGCTTC
TTCTCTGCGAGGGCCCGGCTATCGGAAAGCGAGCGAGGACTGAAGGACAA
AGAAGATTCACCGGATTTTTATCACGAAAGAGAGCAAGAAAATATGTCAC
AGTCTGTACAAGCGGATGATAGGTCAGAGTCGCCCATGGGTGGGGAGGAA
TTCGGGGTAGGCGAGGGGGCAGCTCCCCAGACAGAGACGGAGTCCTCCTG
GGAGGGCCGTATGGCCACGGGCCGGGCCCACTTGCTGAAAGGCGTTGCTT
TGGCGTTGCAGGAGCTTATAGCGACGCGAGGGCAGTCTCCTCTTTCGGCC
TTACGCCATGACCCGGGGCCCACAAGCCCCGATTTCTCCGAAGCCCTCAG
TCACATCGAGCAATCAGCAAACGTATTGGCTCATTCCAACTCAGGCGAAC
TCGAGATCATCGAGCGAGATTATGTGAATGCCACGACCGTGTTGGCTTTG
CTGAGGCTACATGAGGGCAACTTCGACGAAGTCTTCAGACTCGTGGGGGT
ACTCCAGTCCCAAGTAGACCTCGACCCGGAGGAGAAGTCCCTCTTGGCCT
TGCTGCAGGGCTACGTGCAGGAGGCCCAAGGGACGGACAAGGCAGGAATG
TTTTTTGCCCTGGCTCGCGAATACGATCCAAAGGGATGCCACGAATCGCT
CTTGGACACAAGCTACCAGCCCCCTCACTACAAACTCAGCGCGGGGATCC
CGGCGGAACGCCCCGCCTACTGGCCCGCCTTGGCGGACCTCTTCGTTTTT
CGCGAGCTCTACACGCGGCAGCATGCACTGTCGCCTGCGGCTAGCTGGCC
CGGGACCGTGTGGTCGGAGGCCGCGCAGAGCGATAAGGACCGGCATGGCG
CCAATATTGGCTGGGGGCTCCATTCCGCCGGGGTGGCGCGCGCGGCTGAC
CTCTTCGCAGCACAAGACTTTGTCATCTTGCGAGAATTCTTGCATCCCTT
TGAATTGGCTGTGTTGGAACGGCATTATCAAGCCAGAGCTCAGGGAGGGG
ACGTGGAGTATGATCAACACTTGGGCCGAGCTACTTCGTACCAGGACCGC
GTCGGTAATTTTTTAAATCATCGCCTGACCGGGCTTTTGAACACGATTGG
GAAACGTCCTCTGAAGCATGCCTACTCTTTTTTGTGTCATTATGAGCGAC
GGAATGGGGTAGTCCCTCAATTGAAACCACACACAGACCGGGAAGACAAC
GAGGTCACCGTGAGCGCGCAAATTTACAGCGACCAGGCGCACTCTCAGTG
GCCAATTTACGTCGACACGACCGAAACTCTTCCGGAACACAGCAGTTGGC
GACCAAAACCTTCAGAGGGATCCGCCATCCAATGCGATATCAAAAACGGA
GATGCCTTGGTTTTCTTGGGTCGACGGCACACTCATTACCGGGAAGCCAT
GCCTGACGAGTTATCCACTGTCTCGTCTTTGCTTCTGCATTTTGTTGATA
GGCACTTCGATTTTTTCGATTATAAAATCGCTAGGCAACGCCAGGATCCA
TCTATATGACCGAGCAATGTAGATTAAAAAGACAAATTATGGGATGATTT
TTTTGTTTTTGTACGTCACGCGTGAGACGGAACCTTTCTTCGCGCCTTTC
AAATGGGCCGACGTCTCCCTTTTCCGTGTGCTCTCCCATCCTGCACACAG
TCTTCACTGCTGCGATCAACAAGGTGTCTCCCA

protein sequence of rna6107

>rna6107-protein ID=rna6107-protein|Name=rna6107|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MASSLTDKYKKWDKLELSDDEDDVHPNIDKQSWFRWKHQARVEREMKEKH
EQEILEEKNKMATARKVELQAQMQQIEEGVDNAASKEELIGMRAELAEIE
KDMQQRCARLEEMDRNRKLNVDNVGTVVKDYTFINTREGASDVLPDSLNF
IPKPSLDSKSAAGGSATKSTSSAVTVQSTDQLTKELSTAPSRAASTDKPG
GLARPSAGVGPHSELDAAESYNNFVLGHEKLLEDFSEVTSLEQAQEMLHK
EGHILLAEHSQSYLLLSCLEDEMNGKHARMKNTARQSQILSHITELAHSL
DRSPRDVVVPFFRRLQEPVHLKGFSDAVQDFIVKVQKRAVEKRKEMAEAR
ARGEEVDGLVQEEEEEVALGPGGLNPIQVFQELPPVLQEAFESRDMNALR
AALAAMPAEEARRHMKACEDSGLWVPHRGDDETVKEEHEISQS

mRNA from alignment at CM002467.1:588586..590463-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6107 ID=rna6107|Name=rna6107|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp|location=Sequence derived from alignment at CM002467.1:588586..590463- (Nannochloropsis gaditana)
AGTGATGCCATAGACATGGAAAAAGGGAGTCATTCTATCCATACTGATCC
ACGCACAGACGCATTCCAATCGGGTCACTTATGGCTAGCAGCCTAACGGA
CAAGTATAAAAAATGGGACAAATTGGAGCTGTCAGACGACGAGGACGATG
TGCATCCGAATATCGACAAGCAGAGTTGGTTCCGATGGAAGCATCAGGCT
CGCGTTGAACGGTAAGTACGCGCGATGGGATTAGCTTGGGACCAACCTTG
TATTGATGCTTGTGTCACCCTTTTTTTTCATTGCCTTGAGCTTTTCTAAG
CGAAAAAAGTGCGGGTGGGATGTCTTCAGGAGAGCTCTAGGAATGTTCTT
CAGGGGGCCATGGAAGAGAAGCAGTGAGATGTTGCCCGAGGGGGCACTTT
TCAAAAAAATCCGGTGAAAGAAAATTGTGAACTTTATATAAGATACTCAC
ACTGTGTGCGTCTTAAATTTGGAACGACAAGTGCGTCTGCATATAAATGA
GTATCAGACACAACTTGGAAAGCTTGCGCACCTGATCCCACGTGGCGCAC
TTCCCCCACATCCCAGAGAAATGAAAGAAAAACACGAACAGGAAATACTT
GAAGAGAAAAACAAAATGGCAACAGCACGAAAGGTGGAGTTGCAGGCGCA
GATGCAGCAGATTGAGGAGGGCGTGGACAACGCAGCTAGCAAAGAGGAGC
TCATAGGTATGCGAGCGGAGCTAGCTGAAATTGAAAAAGACATGCAACAG
CGCTGTGCACGATTGGAGGAAATGGATCGAAATCGAAAGCTGAATGTGGA
CAATGTCGGGACGGTGGTCAAGGACTACACCTTCATCAACACTCGAGAGG
GAGCCTCGGACGTATTGCCCGACTCCTTGAATTTCATTCCCAAACCAAGC
CTCGATTCGAAAAGTGCTGCCGGGGGCAGCGCGACGAAAAGCACGAGCAG
CGCTGTGACGGTGCAGTCGACGGACCAGCTTACCAAGGAACTCTCCACGG
CGCCCTCGAGGGCCGCGAGCACTGATAAGCCTGGGGGGCTAGCGAGACCC
TCGGCGGGAGTAGGCCCGCATTCGGAGCTGGACGCTGCGGAGAGCTACAA
CAACTTTGTCCTGGGTCACGAGAAGCTTTTGGAAGACTTCAGCGAGGTCA
CGTCTCTGGAGCAAGCCCAGGAAATGTTGCACAAGGAAGGGCACATCTTG
CTGGCGGAGCACTCCCAGTCCTACCTGCTGCTCTCGTGCCTGGAGGATGA
GATGAATGGGAAACACGCACGGATGAAAAACACGGCCCGGCAGAGTCAGA
TCCTCTCGCACATCACGGAGCTGGCGCACTCGCTGGACCGCAGTCCCCGG
GATGTGGTAGTGCCTTTCTTCCGCCGTCTGCAGGAACCCGTACACTTGAA
AGGATTCTCTGACGCCGTGCAAGACTTCATAGTGAAGGTTCAAAAGCGGG
CGGTGGAAAAGCGCAAAGAGATGGCGGAGGCACGAGCTCGGGGGGAGGAG
GTGGACGGCCTTGTTCAGGAGGAAGAAGAGGAGGTGGCGCTGGGTCCGGG
GGGGTTAAATCCGATCCAAGTCTTTCAAGAACTCCCTCCGGTATTGCAAG
AGGCATTTGAAAGCCGAGACATGAATGCCTTACGTGCGGCTCTGGCGGCC
ATGCCCGCAGAGGAAGCTCGTAGACACATGAAAGCGTGCGAAGACTCGGG
TTTGTGGGTGCCACATCGAGGGGACGACGAGACGGTAAAGGAAGAGCACG
AAATCAGTCAATCCTGAGGGAATAGTGCGCGGAAGATGGTAAAAGGGAAC
TCCAACTGACCTGGCGGGGGGCTGTTGAACCACGGCTTCGAATGCTAGAA
TGAACAAGACCGTGTTATTTGGACAGAA

Coding sequence (CDS) from alignment at CM002467.1:588586..590463-

>rna6107 ID=rna6107|Name=rna6107|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002467.1:588586..590463- (Nannochloropsis gaditana)
AGAAATGAAAGAAAAACACGAACAGGAAATACTTGAAGAGAAAAACAAAA
TGGCAACAGCACGAAAGGTGGAGTTGCAGGCGCAGATGCAGCAGATTGAG
GAGGGCGTGGACAACGCAGCTAGCAAAGAGGAGCTCATAGGTATGCGAGC
GGAGCTAGCTGAAATTGAAAAAGACATGCAACAGCGCTGTGCACGATTGG
AGGAAATGGATCGAAATCGAAAGCTGAATGTGGACAATGTCGGGACGGTG
GTCAAGGACTACACCTTCATCAACACTCGAGAGGGAGCCTCGGACGTATT
GCCCGACTCCTTGAATTTCATTCCCAAACCAAGCCTCGATTCGAAAAGTG
CTGCCGGGGGCAGCGCGACGAAAAGCACGAGCAGCGCTGTGACGGTGCAG
TCGACGGACCAGCTTACCAAGGAACTCTCCACGGCGCCCTCGAGGGCCGC
GAGCACTGATAAGCCTGGGGGGCTAGCGAGACCCTCGGCGGGAGTAGGCC
CGCATTCGGAGCTGGACGCTGCGGAGAGCTACAACAACTTTGTCCTGGGT
CACGAGAAGCTTTTGGAAGACTTCAGCGAGGTCACGTCTCTGGAGCAAGC
CCAGGAAATGTTGCACAAGGAAGGGCACATCTTGCTGGCGGAGCACTCCC
AGTCCTACCTGCTGCTCTCGTGCCTGGAGGATGAGATGAATGGGAAACAC
GCACGGATGAAAAACACGGCCCGGCAGAGTCAGATCCTCTCGCACATCAC
GGAGCTGGCGCACTCGCTGGACCGCAGTCCCCGGGATGTGGTAGTGCCTT
TCTTCCGCCGTCTGCAGGAACCCGTACACTTGAAAGGATTCTCTGACGCC
GTGCAAGACTTCATAGTGAAGGTTCAAAAGCGGGCGGTGGAAAAGCGCAA
AGAGATGGCGGAGGCACGAGCTCGGGGGGAGGAGGTGGACGGCCTTGTTC
AGGAGGAAGAAGAGGAGGTGGCGCTGGGTCCGGGGGGGTTAAATCCGATC
CAAGTCTTTCAAGAACTCCCTCCGGTATTGCAAGAGGCATTTGAAAGCCG
AGACATGAATGCCTTACGTGCGGCTCTGGCGGCCATGCCCGCAGAGGAAG
CTCGTAGACACATGAAAGCGTGCGAAGACTCGGGTTTGTGGGTGCCACAT
CGAGGGGACGACGAGACGGTAAAGGAAGAGCACGAAATCAGTCAATCCTG
AATGGCTAGCAGCCTAACGGACAAGTATAAAAAATGGGACAAATTGGAGC
TGTCAGACGACGAGGACGATGTGCATCCGAATATCGACAAGCAGAGTTGG
TTCCGATGGAAGCATCAGGCTCGCGTTGAACGAGAAATGAAAGAAAAACA
CGAACAGGAAATACTTGAAGAGAAAAACAAAATGGCAACAGCACGAAAGG
TGGAGTTGCAGGCGCAGATGCAGCAGATTGAGGAGGGCGTGGACAACGCA
GCTAGCAAAGAGGAGCTCATAGGTATGCGAGCGGAGCTAGCTGAAATTGA
AAAAGACATGCAACAGCGCTGTGCACGATTGGAGGAAATGGATCGAAATC
GAAAGCTGAATGTGGACAATGTCGGGACGGTGGTCAAGGACTACACCTTC
ATCAACACTCGAGAGGGAGCCTCGGACGTATTGCCCGACTCCTTGAATTT
CATTCCCAAACCAAGCCTCGATTCGAAAAGTGCTGCCGGGGGCAGCGCGA
CGAAAAGCACGAGCAGCGCTGTGACGGTGCAGTCGACGGACCAGCTTACC
AAGGAACTCTCCACGGCGCCCTCGAGGGCCGCGAGCACTGATAAGCCTGG
GGGGCTAGCGAGACCCTCGGCGGGAGTAGGCCCGCATTCGGAGCTGGACG
CTGCGGAGAGCTACAACAACTTTGTCCTGGGTCACGAGAAGCTTTTGGAA
GACTTCAGCGAGGTCACGTCTCTGGAGCAAGCCCAGGAAATGTTGCACAA
GGAAGGGCACATCTTGCTGGCGGAGCACTCCCAGTCCTACCTGCTGCTCT
CGTGCCTGGAGGATGAGATGAATGGGAAACACGCACGGATGAAAAACACG
GCCCGGCAGAGTCAGATCCTCTCGCACATCACGGAGCTGGCGCACTCGCT
GGACCGCAGTCCCCGGGATGTGGTAGTGCCTTTCTTCCGCCGTCTGCAGG
AACCCGTACACTTGAAAGGATTCTCTGACGCCGTGCAAGACTTCATAGTG
AAGGTTCAAAAGCGGGCGGTGGAAAAGCGCAAAGAGATGGCGGAGGCACG
AGCTCGGGGGGAGGAGGTGGACGGCCTTGTTCAGGAGGAAGAAGAGGAGG
TGGCGCTGGGTCCGGGGGGGTTAAATCCGATCCAAGTCTTTCAAGAACTC
CCTCCGGTATTGCAAGAGGCATTTGAAAGCCGAGACATGAATGCCTTACG
TGCGGCTCTGGCGGCCATGCCCGCAGAGGAAGCTCGTAGACACATGAAAG
CGTGCGAAGACTCGGGTTTGTGGGTGCCACATCGAGGGGACGACGAGACG
GTAAAGGAAGAGCACGAAATCAGTCAATCCTGAATGGCTAGCAGCCTAAC
GGACAAGTATAAAAAATGGGACAAATTGGAGCTGTCAGACGACGAGGACG
ATGTGCATCCGAATATCGACAAGCAGAGTTGGTTCCGATGGAAGCATCAG
GCTCGCGTTGAACG

Synonyms

Publications