rna61, rna61 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna61
Unique Name	rna61
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1396
Alignment location	CM002455.1:175341..178426 +

Link to JBrowse

Properties


Property Name	Value
Product	Zn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100129g5.1887.mrna
Orig protein id	gnl\|cribi\|Naga_100129g5.1887
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:175341..178426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100129g5	gene60	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna61	rna61-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30609.1	cds61	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:175341..178426+
coding sequence from alignment at CM002455.1:175341..178426+

mRNA sequence

>rna61 ID=rna61|Name=rna61|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp
GGCCGGAGAGGAATAAGAGTTAGGGAAGGATGGACGAAGGTAGGGAGGGA
GGGAGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGAGTGAACGCGA
TCCGTCCACACCAGCGCGCGGAAACCACGCACCATTTGGTTTTACTCTCT
CGGCACAACTGGCACGTCAACCATCGACTCGTCTGCGGATTCGACAGGGT
TCGCTTCTTGGCAGCTCGCCCTCCGGCCGTACTGCTACTTGTCTCACTAC
ACTGGCTCTGCCCGCCGCGGGCAACTCGGGGGAGATCGGGGCCCCTGTCA
GTGCTCGCACCACTGATCCAACTGCGATCGTCTCCTTCTTCCTGCCCGGG
GTCCGTCCAAAGTGGAAAAGGTTCTTGGAGGAAGGGCTGGGCAAGGTCCA
ATTCATTCGGTACCTCATAAAGCTGCGGCGGCGAAGGGGGTGCGACGTAC
GGTGGCGGGTGTGGGGGATAAAGACCTTGATTCTCAAGGTTATTCTCTTC
AGACCCGGTCAGGCCGCCGCAGCAGCCTCCGTGCATGCTCTTGGAAGAGG
AATAGGGAACGGTTGGTTGACCACCCGCGATTTGGGCGTATTACCGGCGT
GTACGCGACACAGCACTTGGGAGGGCTTTAACGTGAAGACGAAAAGCGCA
TCAAAAGGCGCTGAGCCCAGTGGGTAATGGCCAGGCATTACCCATCCTGT
GCATCTGTATCAAGAATAGAAAGTGACCGGGTCAATGTCCGAGTCTTGTC
GTAGTCTCTGTGCGTGCGGTAAAGTGCTTGCCGCAAGCTCACTAATATCA
GCCTCGCAATAACCGCGCATCTCCCTCTCTTGCTCAGGAAATAAAACAAC
AAATCACCACGCCCGTGTCCCGCCACCGGGGGACAGCGTCACATCCCATG
CGTTTCAACGCCCCATAAAAGAGGCGTGTTGGTGTGTGTTGGTACGTCGT
GGGTCCCGCCTTGTTGCTGTCTACATGCAACTCATGAGAGAAGACAGGTG
CGCGTGACCCTCCACCCAGAAGTGGCACGTACATAATCCACGTTTGCGTG
CGGGACAAGGTGGTCCGAGGCCTTGCGACCGTGTCGCTCATGCTCCGAAC
ACGATGACAAGCTTAGCAGAGCTACGATTGAGTCGATGTTTGATTGACGT
CGGTCCGTGGTTTTTGGCATTGACCTTCCCTCCACCTTGAAAGCTCAGCT
ACAAGCGTAACCCCCAGCCACTGCCACCCTCCGCTTTAACCATCACCCAT
GAACATTGCCACAGACTGAGACATTTAGTACTCCGTAACATTAAAGTATA
GTTTCCAAGTACCAGCATTTGTCGGTCCCCCCCGAAAAATGGAAAAAAAA
ATAATCGACAAAGACAGAAAAGTGATGTTTTAAAGTCCATTACAGG

protein sequence of rna61

>rna61-protein ID=rna61-protein|Name=rna61|organism=Nannochloropsis gaditana|type=polypeptide|length=841bp
MHGGCCGGLTGSEENNLENQGLYPPHPPPYVAPPSPPQLYEVPNELDLAQ
PFLQEPFPLWTDPGQEEGDDRSWISGASTDRGPDLPRVARGGQSQCSETS
SSTAGGRAAKKRTLSNPQTSRWLTCQLCRESKTKCDGAFPCSRCWNRMCV
CCRPQQHTLESVAPSPGPGAKKRRRRRALPEEVTDLLEEEKQDEAMEVAG
STPYVHLVFLRSRPQPLVEVFLRTFGEMYLEEQRGGARAGGEGGRDGRGF
DRGKAVRLLRCWQERSTYVGTDVTHGILPALTGLFQVTGEELGEGGDKEG
GTEGGAGAHPQSTEAMLVAAERLRGSWASAWVGGREGGREGGGEGGAQDG
GVLLAVSDGTLLHWVGNAAFDRLFLSVAGLLNESMARRRLPILLFAALLH
PQDRPVWFRGVIRALFTSPGPAPCTTGLVGEWEGDGVAGREGGVAPASRP
PTPPPSFPPRLPPPSHVIKAIDREGRISTYHLTVTALNRRVRPPPGSSAS
ATEGEDGGKEGAVEEHGMVIVLVPVPETKEGGQGGTAPPNAPVGDTGEGE
REVGGGGRKTRRAESKRRGQGGGTEALTHQSAASRRGRGRFSSACASCPP
SATSSSPSLPPWPGNTLVTPPSPSHSLAGLFPPFAASSSSSSCAASSSSS
SSAAEPATHPLLQYLHMGGEGKPVDGRASQSIHSIAYPPVHPPEGLAGRA
GREGGREGGGKTVRKGKTEEEPVGGCCQRIHPPERVWAPPSYSNSAAPPP
PLLPPPMLPAFSSLPVPSHRPPPYLPSLPPPGASLEVAGPLPTISHSAEA
INRAGPDSGEGEGSKEGREEGMEHGGEDFMRDEGLRADHEI

mRNA from alignment at CM002455.1:175341..178426+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna61 ID=rna61|Name=rna61|organism=Nannochloropsis gaditana|type=mRNA|length=3086bp|location=Sequence derived from alignment at CM002455.1:175341..178426+ (Nannochloropsis gaditana)
ATACAGATGCACAGGATGGGTAATGCCTGGCCATTACCCACTGGGCTCAG
CGCCTTTTGATGCGCTTTTCGTCTTCACGTTAAAGCCCTCCCAAGTGCTG
TGTCGCGTACACGCCGGTAATACGCCCAAATCGCGGGTGGTCAACCAACC
GTTCCCTattcctcttccaagagcATGCACGGAGGCTGCTGCGGCGGCCT
GACCGGGTCTGAAGAGAATAACCTTGAGAATCAAGGTCTTTATCCCCCAC
ACCCGCCACCGTACGTCGCACCCCCTTCGCCGCCGCAGCTTTATGAGGTA
CCGAATGAATTGGACCTTgcccagcccttcctccaagaACCTTTTCCACT
TTGGACGGACCCcgggcaggaagaaggagacgatcGCAGTTGGATCAGTG
GTGCGAGCACTGACAGGGGCCCCGATCTCCCCCGAGTTGCCCGCGGCGGG
CAGAGCCAGTGTAGTGAGACAAGTAGCAGTACGGCCGGAGGGCGAGCTGC
CAAGAAGCGAACCCTGTCGAATCCGCAGACGAGTCGATGGTTGACGTGCC
AGTTGTGCCGAGAGAGTAAAACCAAATGGTGCGTGGTTTCCGCGCGCTGG
TGTGGACGGATCGcgttcactccctccctccccccctccctccccccctc
cctccctccctccctccctaccttcgtCCATCCTTCCCTAACTCTTATTC
CTCTCCGGCCCCTGCGCCCTGTgtccccatccctctccgctCCCCTCGGT
ATATGACTATGTTTCCACACCGTTCTCTAAccatccgccctccctccctc
tgaaAGTTGTAGCGCCTTTGACGTGCCCTTCCTTAGCGTCCTTCTCTGTC
TTCGTCCACTTATCCACCCTtgccctgctccctctctcatttTCATTCTC
TCCTCTCGATTCAGTGACGGGGCGTTCCCCTGCTCGCGATGCTGGAACCG
GATGTGCGTGTGCTGTCGGCCTCAGCAGCATACCCTTGAAAGCGTGGCTC
CGAGtccggggccgggggcgaaAAAACGCCGACGCCGACGGGCGTTGCCG
GAGGAAGTGACGGacctgctggaggaagagaagcaggacgaggcgatgga
ggtggcgggaagCACCCCGTACGTGCATTTGGTTTTCCTCCGCTCCCGGC
CCCAGCCTCTGGTGGAAGTTTTCCTTCGGACCTTTGGGGAGATGTACCTG
GAGGAGCaacggggaggggcgagggcagggggggagggagggagggacgg
tcGGGGTTTCGATCGGGGGAAAGCGGTGCGATTATTGCGGTGTTGGCAGG
AGCGGAGTACCTATGTCGGGACGGACGTGACGCACGGGATATTGCCTGCC
TTGACGGGCTTGTTCCAGGTAACCGGGGAGGaactgggggagggagggga
caaggagggcgggacggagggcggggccggggcacACCCGCAATCCACGG
AGGCGATGTTGGTGGCGGCGGAACGGTTGAGGGGCTCGTGGGCCTCGGCt
tgggtgggaggaagggagggagggagggagggagggggggagggaggggc
acagGACGGTGGGGTCCTGCTCGCGGTCAGCGACGGCACTCTCCTCCACT
GGGTGGGCAACGCGGCCTTCGACCGGCTCTTTTTGAGCGTGGCAGGTCTC
TTGAACGAGTCCATGGCACGCCGGCGCTTGcctatcctcctcttcgccgc
aCTACTCCACCCACAAGATCGGCCCGTCTGGTTTCGTGGCGTCATTCGCG
CACTTTTtacctcccccggccccgcgcCATGCACGACGGGTCTCgtgggg
gaatgggagggcgACGGAGTGGCTGGTCGTGAGGGTGGTGTGGCgcctgc
ttcccgccctcctacccctcctccctccttccctccccgactccctcccc
cgtcccatGTCATCAAAGCGATTGACCGGGAGGGACGGATTTCCACCTAC
CATTTGACCGTAACGGCCCTCAACCGTCGcgtgcgtcctcctcccggttc
TTCGGCGTCGGccacggaaggagaggatggggggaaagaaggggcagtAG
AGGAGCACGGGATGGTGATTGTTTTGGTTCCTGTGCCCGAAACcaaagag
ggggggcagggtggCACCGCTCCCCCTAATGCGCCTGTAGGGGAtacagg
agaaggggaaagggaagtgggaggtggaggtaggaagacgaggcgggCAG
AGTccaagaggagagggcagggtgGTGGGACGGAGGCCCTGACGCATCAA
TCCGCTGCTTctcgacgagggaggggacggttTTCCTCCGCTTGTgcctc
ttgtcctccctcggccacctccagcagccCTTCGTTACCCCCTTGGCCGG
GCAACACTTTagtcacccctccctctccttcccactccctgGCCGGCcta
ttccctccctttgccgcttcctcctcgtcctcctcctgtgccgcctcctc
ctcgtcctcctcctctgccgccgaGCCGGCGACCCACCCTCTGCTGCAGT
ATTTGCACATGGGGGGCGAAGGCAAGCCCGTGGATGGAAGGGCCTCACAG
AGCATCCACTCGATTGCTTACCCCCCAGTGCATCCCCCCGAGGGTCTCGC
CGGgcgagcagggcgggagggtgggagggagggaggcgggaagacagtca
ggaaaggaaagacggaggaggagccggtggGCGGGTGCTGTCAGCGCATT
CACCCACCGGAACGGGTCtgggcccctccttcctactcgaactccgccgc
cccccctcctcctcttctacctccGCCCAtgctccctgccttctcctccc
ttccggtcccttcccacaggcctccgccctaccttccctccctccctccc
ccaggggCGTCTTTGGAGGTGGCCGGTCCTCTGCCCACCATTTCTCATTC
CGCGGAAGCCATCAACCGGGCGGGGCCTGActcaggagagggagaggggt
caaaggaaggaagggaagaagggatggaacatggaggggaggatttCATG
CGAGATGAGGGATTGCGCGCAGACCATGAAATAtaaggcgggaggagggg
caacaAAGCAAAAGATGAAAAAAGttgttttttccc

Coding sequence (CDS) from alignment at CM002455.1:175341..178426+

>rna61 ID=rna61|Name=rna61|organism=Nannochloropsis gaditana|type=CDS|length=5052bp|location=Sequence derived from alignment at CM002455.1:175341..178426+ (Nannochloropsis gaditana)
ATGCACGGAGGCTGCTGCGGCGGCCTGACCGGGTCTGAAGAGAATAACCT
TGAGAATCAAGGTCTTTATCCCCCACACCCGCCACCGTACGTCGCACCCC
CTTCGCCGCCGCAGCTTTATGAGGTACCGAATGAATTGGACCTTgcccag
cccttcctccaagaACCTTTTCCACTTTGGACGGACCCcgggcaggaaga
aggagacgatcGCAGTTGGATCAGTGGTGCGAGCACTGACAGGGGCCCCG
ATCTCCCCCGAGTTGCCCGCGGCGGGCAGAGCCAGTGTAGTGAGACAAGT
AGCAGTACGGCCGGAGGGCGAGCTGCCAAGAAGCGAACCCTGTCGAATCC
GCAGACGAGTCGATGGTTGACGTGCCAGTTGTGCCGAGAGAGTAAAACCA
AATGTGACGGGGCGTTCCCCTGCTCGCGATGCTGGAACCGGATGTGCGTG
TGCTGTCGGCCTCAGCAGCATACCCTTGAAAGCGTGGCTCCGAGtccggg
gccgggggcgaaAAAACGCCGACGCCGACGGGCGTTGCCGGAGGAAGTGA
CGGacctgctggaggaagagaagcaggacgaggcgatggaggtggcggga
agCACCCCGTACGTGCATTTGGTTTTCCTCCGCTCCCGGCCCCAGCCTCT
GGTGGAAGTTTTCCTTCGGACCTTTGGGGAGATGTACCTGGAGGAGCaac
ggggaggggcgagggcagggggggagggagggagggacggtcGGGGTTTC
GATCGGGGGAAAGCGGTGCGATTATTGCGGTGTTGGCAGGAGCGGAGTAC
CTATGTCGGGACGGACGTGACGCACGGGATATTGCCTGCCTTGACGGGCT
TGTTCCAGGTAACCGGGGAGGaactgggggagggaggggacaaggagggc
gggacggagggcggggccggggcacACCCGCAATCCACGGAGGCGATGTT
GGTGGCGGCGGAACGGTTGAGGGGCTCGTGGGCCTCGGCttgggtgggag
gaagggagggagggagggagggagggggggagggaggggcacagGACGGT
GGGGTCCTGCTCGCGGTCAGCGACGGCACTCTCCTCCACTGGGTGGGCAA
CGCGGCCTTCGACCGGCTCTTTTTGAGCGTGGCAGGTCTCTTGAACGAGT
CCATGGCACGCCGGCGCTTGcctatcctcctcttcgccgcaCTACTCCAC
CCACAAGATCGGCCCGTCTGGTTTCGTGGCGTCATTCGCGCACTTTTtac
ctcccccggccccgcgcCATGCACGACGGGTCTCgtgggggaatgggagg
gcgACGGAGTGGCTGGTCGTGAGGGTGGTGTGGCgcctgcttcccgccct
cctacccctcctccctccttccctccccgactccctcccccgtcccatGT
CATCAAAGCGATTGACCGGGAGGGACGGATTTCCACCTACCATTTGACCG
TAACGGCCCTCAACCGTCGcgtgcgtcctcctcccggttcTTCGGCGTCG
GccacggaaggagaggatggggggaaagaaggggcagtAGAGGAGCACGG
GATGGTGATTGTTTTGGTTCCTGTGCCCGAAACcaaagagggggggcagg
gtggCACCGCTCCCCCTAATGCGCCTGTAGGGGAtacaggagaaggggaa
agggaagtgggaggtggaggtaggaagacgaggcgggCAGAGTccaagag
gagagggcagggtgGTGGGACGGAGGCCCTGACGCATCAATCCGCTGCTT
ctcgacgagggaggggacggttTTCCTCCGCTTGTgcctcttgtcctccc
tcggccacctccagcagccCTTCGTTACCCCCTTGGCCGGGCAACACTTT
agtcacccctccctctccttcccactccctgGCCGGCctattccctccct
ttgccgcttcctcctcgtcctcctcctgtgccgcctcctcctcgtcctcc
tcctctgccgccgaGCCGGCGACCCACCCTCTGCTGCAGTATTTGCACAT
GGGGGGCGAAGGCAAGCCCGTGGATGGAAGGGCCTCACAGAGCATCCACT
CGATTGCTTACCCCCCAGTGCATCCCCCCGAGGGTCTCGCCGGgcgagca
gggcgggagggtgggagggagggaggcgggaagacagtcaggaaaggaaa
gacggaggaggagccggtggGCGGGTGCTGTCAGCGCATTCACCCACCGG
AACGGGTCtgggcccctccttcctactcgaactccgccgccccccctcct
cctcttctacctccGCCCAtgctccctgccttctcctcccttccggtccc
ttcccacaggcctccgccctaccttccctccctccctcccccaggggCGT
CTTTGGAGGTGGCCGGTCCTCTGCCCACCATTTCTCATTCCGCGGAAGCC
ATCAACCGGGCGGGGCCTGActcaggagagggagaggggtcaaaggaagg
aagggaagaagggatggaacatggaggggaggatttCATGCGAGATGAGG
GATTGCGCGCAGACCATGAAATAtaaATGCACGGAGGCTGCTGCGGCGGC
CTGACCGGGTCTGAAGAGAATAACCTTGAGAATCAAGGTCTTTATCCCCC
ACACCCGCCACCGTACGTCGCACCCCCTTCGCCGCCGCAGCTTTATGAGG
TACCGAATGAATTGGACCTTgcccagcccttcctccaagaACCTTTTCCA
CTTTGGACGGACCCcgggcaggaagaaggagacgatcGCAGTTGGATCAG
TGGTGCGAGCACTGACAGGGGCCCCGATCTCCCCCGAGTTGCCCGCGGCG
GGCAGAGCCAGTGTAGTGAGACAAGTAGCAGTACGGCCGGAGGGCGAGCT
GCCAAGAAGCGAACCCTGTCGAATCCGCAGACGAGTCGATGGTTGACGTG
CCAGTTGTGCCGAGAGAGTAAAACCAAATGTGACGGGGCGTTCCCCTGCT
CGCGATGCTGGAACCGGATGTGCGTGTGCTGTCGGCCTCAGCAGCATACC
CTTGAAAGCGTGGCTCCGAGtccggggccgggggcgaaAAAACGCCGACG
CCGACGGGCGTTGCCGGAGGAAGTGACGGacctgctggaggaagagaagc
aggacgaggcgatggaggtggcgggaagCACCCCGTACGTGCATTTGGTT
TTCCTCCGCTCCCGGCCCCAGCCTCTGGTGGAAGTTTTCCTTCGGACCTT
TGGGGAGATGTACCTGGAGGAGCaacggggaggggcgagggcaggggggg
agggagggagggacggtcGGGGTTTCGATCGGGGGAAAGCGGTGCGATTA
TTGCGGTGTTGGCAGGAGCGGAGTACCTATGTCGGGACGGACGTGACGCA
CGGGATATTGCCTGCCTTGACGGGCTTGTTCCAGGTAACCGGGGAGGaac
tgggggagggaggggacaaggagggcgggacggagggcggggccggggca
cACCCGCAATCCACGGAGGCGATGTTGGTGGCGGCGGAACGGTTGAGGGG
CTCGTGGGCCTCGGCttgggtgggaggaagggagggagggagggagggag
ggggggagggaggggcacagGACGGTGGGGTCCTGCTCGCGGTCAGCGAC
GGCACTCTCCTCCACTGGGTGGGCAACGCGGCCTTCGACCGGCTCTTTTT
GAGCGTGGCAGGTCTCTTGAACGAGTCCATGGCACGCCGGCGCTTGccta
tcctcctcttcgccgcaCTACTCCACCCACAAGATCGGCCCGTCTGGTTT
CGTGGCGTCATTCGCGCACTTTTtacctcccccggccccgcgcCATGCAC
GACGGGTCTCgtgggggaatgggagggcgACGGAGTGGCTGGTCGTGAGG
GTGGTGTGGCgcctgcttcccgccctcctacccctcctccctccttccct
ccccgactccctcccccgtcccatGTCATCAAAGCGATTGACCGGGAGGG
ACGGATTTCCACCTACCATTTGACCGTAACGGCCCTCAACCGTCGcgtgc
gtcctcctcccggttcTTCGGCGTCGGccacggaaggagaggatgggggg
aaagaaggggcagtAGAGGAGCACGGGATGGTGATTGTTTTGGTTCCTGT
GCCCGAAACcaaagagggggggcagggtggCACCGCTCCCCCTAATGCGC
CTGTAGGGGAtacaggagaaggggaaagggaagtgggaggtggaggtagg
aagacgaggcgggCAGAGTccaagaggagagggcagggtgGTGGGACGGA
GGCCCTGACGCATCAATCCGCTGCTTctcgacgagggaggggacggttTT
CCTCCGCTTGTgcctcttgtcctccctcggccacctccagcagccCTTCG
TTACCCCCTTGGCCGGGCAACACTTTagtcacccctccctctccttccca
ctccctgGCCGGCctattccctccctttgccgcttcctcctcgtcctcct
cctgtgccgcctcctcctcgtcctcctcctctgccgccgaGCCGGCGACC
CACCCTCTGCTGCAGTATTTGCACATGGGGGGCGAAGGCAAGCCCGTGGA
TGGAAGGGCCTCACAGAGCATCCACTCGATTGCTTACCCCCCAGTGCATC
CCCCCGAGGGTCTCGCCGGgcgagcagggcgggagggtgggagggaggga
ggcgggaagacagtcaggaaaggaaagacggaggaggagccggtggGCGG
GTGCTGTCAGCGCATTCACCCACCGGAACGGGTCtgggcccctccttcct
actcgaactccgccgccccccctcctcctcttctacctccGCCCAtgctc
cctgccttctcctcccttccggtcccttcccacaggcctccgccctacct
tccctccctccctcccccaggggCGTCTTTGGAGGTGGCCGGTCCTCTGC
CCACCATTTCTCATTCCGCGGAAGCCATCAACCGGGCGGGGCCTGActca
ggagagggagaggggtcaaaggaaggaagggaagaagggatggaacatgg
aggggaggatttCATGCGAGATGAGGGATTGCGCGCAGACCATGAAATAt
aa

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