rna6096, rna6096 (mRNA) Nannochloropsis gaditana

Overview
Namerna6096
Unique Namerna6096
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length864
Alignment locationCM002467.1:555077..556897 -

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Properties
Property NameValue
Productbeta-lactamase domain protein
Orig transcript idgnl|cribi|Naga_100062g12.919.mrna
Orig protein idgnl|cribi|Naga_100062g12.919
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:555077..556897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g12gene5889Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6096rna6096-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24596.1cds6081Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6096 ID=rna6096|Name=rna6096|organism=Nannochloropsis gaditana|type=mRNA|length=864bp
ATGGGCGTCAAGGAAGTACCTTTGCCAACCTACTTCATCGAAGGGCCATC
TGCGAGTGCCGAGGCCAAGTATGGCAGCGTGGTACCGGGAGGCGACGTCT
TCCCCAAGTGCACGTACCTGGGGCCCGGGGGGCTGGAGTTGGTAGGGAAG
CTGACCGTAGGCTTCCTCAGCCAACGACACACAGACAAGGACATCGAGAA
AATCGTCGAGCCTGCCAGCAGCTCGACATTCTTAGGGGCAGACATTTTCC
TGAGCACGGACTGGGGCCAAGGCGTCGCTGCTGGATATGACTTGAGCGCA
ATGGGAGTGCGAGATGCGGCCGGGACGGGTTCCTCCACCGTCGCTGACCT
CGCGGTCGTCCTGCGTCCTCGGTATCATTTTGCCGCCCGCCCAGGAATCT
ATTTTCAACGCCCTCCGTACAAGAACCACGCAAGCAAGCCCAAGAGCAAG
CTGAGCCACGTCACCCGTTTCCTCAGCCTGGCGCCGGCCTCCGTGGCCAA
GGAGAAGGCTCGGAAGTGGCTGCATGCCATCAGCATCGAGCCCATCCCGT
ACATGACCTTGGCGGCCTTGGTGGACGAGCCTGCGGACGTGACAGAGTCG
CCGTACTCGGTCTTCAGGACGGCGGGAATGGCGTCTCACAAGTGGGAGGG
CAGTGGAGGACAGGGGGAGGCAGGGAGGCGAACCTGCCCCCCGGCTTCTC
TGCCGACGACCTGCAACGTGGTTTCTCGCACTATGGAGTGGTGGCTCGAA
TTCGGATCCCGGAGGGAAAGGATTTTGCCTTCGTCTCCTTTACGCGGCAC
GAGGAGGCACGCCAGGCCCTGGATGCCCGGGGCATCACCCTTGGCTGTGC
TGGCGTGCGGGTGA
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protein sequence of rna6096

>rna6096-protein ID=rna6096-protein|Name=rna6096|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MPRPHHAHTRPQTHSSSRRVMRMEDKDQEQPLVGPARDIADLEDFGSVEV
TDKCCGAMTCRVLAPEIFHEAKLGSSFSDTHGSSTPDNFTYVGRKIRDET
ELRQVRRAVKACPFHALKLRRGGKGATVMDEDFNAAYPIQVDQSGAVYLL
GHYSPKNAGATCYLIVRPNGGNVLVDCPVPNASLVERIKELGGAKYLVFT
HKDHTAFTKEWKMAFPAIQRVLHAGDVVENRKHFFFPYTGDVEIKLAGGK
AQPLDKEGDIVLIPIPGHSPGSLAILFQEHYLFTGDSLFYSRPRGHLVSS
RLHCWSSWEEQRASLQALDSYQWAHVLPGHGEPKRFSGKEDAQASLARAI
EWMGEQPGGSTSMASFVCWLQLRTHSGQSRFMRAIPRWARKGIERLVAPA
GAPGARERARALKWARSAVMMWILLKVLPNVLAFLSRVGERRRIQARAAA
LVRLPWGHPWLEAEKRR
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mRNA from alignment at CM002467.1:555077..556897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6096 ID=rna6096|Name=rna6096|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp|location=Sequence derived from alignment at CM002467.1:555077..556897- (Nannochloropsis gaditana)
ATGCCTCGACCCCACCACGCACACACACGACCACAGACCCACAGCTCCTC
TCGACGTGTTATGCGAATGGAGGATAAAGATCAGGAGCAGCCCTTGGTGG
GGCCAGCCAGAGACATTGCGGATTTGGAGGATTTTGGGTCTGTTGAAGTG
ACTGACAAATGCTGTGGTGCCATGACCTGTCGCGTCTTGGCTCCTGAAAT
ATTTCATGAAGCCAAATTGGGAAGCAGCTTTTCAGACACACATGGGAGTT
CGACTCCCGACAATTTTACATACGTAGGTCGAAAGATCAGGGACGAAACG
GAGCTCCGGCAGGTGCGAAGAGCAGTTAAAGCGTGCCCCTTTCACGCTCT
TAAGTTACGGCGCGGGGGAAAAGGGGCGACAGTCATGGATGAGGACTTCA
ATGCTGCCTACCCTATTCAAGTAGATCAGAGCGGGGCCGTGTATTTGTTG
GGGCACTACTCCCCGAAAAATGCCGGGGCGACTTGCTACTTGATCGTACG
ACCAAACGGCGGGAATGTTCTGGTCGATTGTCCCGTACCCAATGCCAGCC
TCGTAGAGCGTATCAAGGAATTGGGGGGGGCAAAATATCTGGTATTTACT
CATAAAGATCATACGGCGTTCACGAAAGAATGGAAAATGGCCTTCCCAGC
CATCCAGCGGGTCTTGCATGCGGGGGACGTGGTAGAGAACCGAAAACATT
TCTTCTTCCCCTACACCGGCGACGTCGAGATCAAGCTGGGTAAGGCATAG
GAGAGGGGAGAGCAGGTTGAATGAAGTCTTGGGGAAGTTTGTCATTATAT
CTGGCAGTTTGCCAGCCACAGTATTTCTCATGGCATGTTTCGAGTCTAAG
TATATCAGCTGCCGAAGCAGACTTTCCTCAATGTCTTTCCACGCGTACCT
ACATGTCATTCGCAGCGGGTGGCAAAGCCCAGCCCTTGGACAAGGAAGGA
GACATTGTCCTCATTCCCATTCCCGGACATTCTCCCGGAAGCCTGGCGAT
CCTCTTCCAAGAGCACTACCTCTTCACGGGGGACTCCCTCTTCTATTCCC
GCCCCCGCGGGCACCTGGTGTCTTCGCGTTTGCACTGCTGGTCAAGCTGG
GAGGAGCAACGAGCCAGCTTACAAGCCCTTGATTCCTATCAATGGGCCCA
CGTTTTGCCCGGGCATGGGGAGCCGAAAAGGTTTTCCGGGAAAGAAGACG
CGCAGGCCTCCCTTGCTCGGGCCATCGAGTGGATGGGGGAGCAGCCCGGC
GGCTCGACCAGCATGGCATCCTTTGTGTGCTGGCTGCAGCTGAGGACGCA
CAGCGGGCAGTCCCGGTTTATGCGTGCCATCCCACGGTGGGCGCGGAAAG
GGATCGAGCGCCTGGTGGCACCGGCGGGGGCTCCCGGGGCGAGGGAAAGG
GCAAGAGCGTTGAAATGGGCCCGATCCGCGGTGATGATGTGGATCCTGCT
CAAGGTGCTTCCAAACGTTTTGGCCTTCTTGTCGCGTGTGGGGGAGCGAC
GTCGGATTCAAGCACGGGCAGCGGCTTTGGTCAGGCTACCCTGGGGACAC
CCGTGGCTGGAGGCGGAGAAGAGGAGGTGAATTCGAGCTACCGTGCAGGT
CGAGGGTGGAGGGGTAGATAGCGAACGGGAAGGGTAATGGACGGAGATGG
GGGGGGGGAAAGGGTATGGACGGACTCGGACAGTGTGATGCTCCTGGACG
TTGGGCATAGAGTGAGTTTTAAGGGCGTGGGCCGGGAGGAAAGACAGAGA
CGCGGCATCTGAGGCGAAAGACCAGCATTCACTTTAAATCATATCACCAT
AAGACAATTTAACGTGCCACC
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Coding sequence (CDS) from alignment at CM002467.1:555077..556897-

>rna6096 ID=rna6096|Name=rna6096|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002467.1:555077..556897- (Nannochloropsis gaditana)
CGGGTGGCAAAGCCCAGCCCTTGGACAAGGAAGGAGACATTGTCCTCATT
CCCATTCCCGGACATTCTCCCGGAAGCCTGGCGATCCTCTTCCAAGAGCA
CTACCTCTTCACGGGGGACTCCCTCTTCTATTCCCGCCCCCGCGGGCACC
TGGTGTCTTCGCGTTTGCACTGCTGGTCAAGCTGGGAGGAGCAACGAGCC
AGCTTACAAGCCCTTGATTCCTATCAATGGGCCCACGTTTTGCCCGGGCA
TGGGGAGCCGAAAAGGTTTTCCGGGAAAGAAGACGCGCAGGCCTCCCTTG
CTCGGGCCATCGAGTGGATGGGGGAGCAGCCCGGCGGCTCGACCAGCATG
GCATCCTTTGTGTGCTGGCTGCAGCTGAGGACGCACAGCGGGCAGTCCCG
GTTTATGCGTGCCATCCCACGGTGGGCGCGGAAAGGGATCGAGCGCCTGG
TGGCACCGGCGGGGGCTCCCGGGGCGAGGGAAAGGGCAAGAGCGTTGAAA
TGGGCCCGATCCGCGGTGATGATGTGGATCCTGCTCAAGGTGCTTCCAAA
CGTTTTGGCCTTCTTGTCGCGTGTGGGGGAGCGACGTCGGATTCAAGCAC
GGGCAGCGGCTTTGGTCAGGCTACCCTGGGGACACCCGTGGCTGGAGGCG
GAGAAGAGGAGGTGAATGCCTCGACCCCACCACGCACACACACGACCACA
GACCCACAGCTCCTCTCGACGTGTTATGCGAATGGAGGATAAAGATCAGG
AGCAGCCCTTGGTGGGGCCAGCCAGAGACATTGCGGATTTGGAGGATTTT
GGGTCTGTTGAAGTGACTGACAAATGCTGTGGTGCCATGACCTGTCGCGT
CTTGGCTCCTGAAATATTTCATGAAGCCAAATTGGGAAGCAGCTTTTCAG
ACACACATGGGAGTTCGACTCCCGACAATTTTACATACGTAGGTCGAAAG
ATCAGGGACGAAACGGAGCTCCGGCAGGTGCGAAGAGCAGTTAAAGCGTG
CCCCTTTCACGCTCTTAAGTTACGGCGCGGGGGAAAAGGGGCGACAGTCA
TGGATGAGGACTTCAATGCTGCCTACCCTATTCAAGTAGATCAGAGCGGG
GCCGTGTATTTGTTGGGGCACTACTCCCCGAAAAATGCCGGGGCGACTTG
CTACTTGATCGTACGACCAAACGGCGGGAATGTTCTGGTCGATTGTCCCG
TACCCAATGCCAGCCTCGTAGAGCGTATCAAGGAATTGGGGGGGGCAAAA
TATCTGGTATTTACTCATAAAGATCATACGGCGTTCACGAAAGAATGGAA
AATGGCCTTCCCAGCCATCCAGCGGGTCTTGCATGCGGGGGACGTGGTAG
AGAACCGAAAACATTTCTTCTTCCCCTACACCGGCGACGTCGAGATCAAG
CTGGCGGGTGGCAAAGCCCAGCCCTTGGACAAGGAAGGAGACATTGTCCT
CATTCCCATTCCCGGACATTCTCCCGGAAGCCTGGCGATCCTCTTCCAAG
AGCACTACCTCTTCACGGGGGACTCCCTCTTCTATTCCCGCCCCCGCGGG
CACCTGGTGTCTTCGCGTTTGCACTGCTGGTCAAGCTGGGAGGAGCAACG
AGCCAGCTTACAAGCCCTTGATTCCTATCAATGGGCCCACGTTTTGCCCG
GGCATGGGGAGCCGAAAAGGTTTTCCGGGAAAGAAGACGCGCAGGCCTCC
CTTGCTCGGGCCATCGAGTGGATGGGGGAGCAGCCCGGCGGCTCGACCAG
CATGGCATCCTTTGTGTGCTGGCTGCAGCTGAGGACGCACAGCGGGCAGT
CCCGGTTTATGCGTGCCATCCCACGGTGGGCGCGGAAAGGGATCGAGCGC
CTGGTGGCACCGGCGGGGGCTCCCGGGGCGAGGGAAAGGGCAAGAGCGTT
GAAATGGGCCCGATCCGCGGTGATGATGTGGATCCTGCTCAAGGTGCTTC
CAAACGTTTTGGCCTTCTTGTCGCGTGTGGGGGAGCGACGTCGGATTCAA
GCACGGGCAGCGGCTTTGGTCAGGCTACCCTGGGGACACCCGTGGCTGGA
GGCGGAGAAGAGGAGGTGAATGCCTCGACCCCACCACGCACACACACGAC
CACAGACCCACAGCTCCTCTCGACGTGTTATGCGAATGGAGGATAAAGAT
CAGGAGCAGCCCTTGGTGGGGCCAGCCAGAGACATTGCGGATTTGGAGGA
TTTTGGGTCTGTTGAAGTGACTGACAAATGCTGTGGTGCCATGACCTGTC
GCGTCTTGGCTCCTGAAATATTTCATGAAGCCAAATTGGGAAGCAGCTTT
TCAGACACACATGGGAGTTCGACTCCCGACAATTTTACATACGTAGGTCG
AAAGATCAGGGACGAAACGGAGCTCCGGCAGGTGCGAAGAGCAGTTAAAG
CGTGCCCCTTTCACGCTCTTAAGTTACGGCGCGGGGGAAAAGGGGCGACA
GTCATGGATGAGGACTTCAATGCTGCCTACCCTATTCAAGTAGATCAGAG
CGGGGCCGTGTATTTGTTGGGGCACTACTCCCCGAAAAATGCCGGGGCGA
CTTGCTACTTGATCGTACGACCAAACGGCGGGAATGTTCTGGTCGATTGT
CCCGTACCCAATGCCAGCCTCGTAGAGCGTATCAAGGAATTGGGGGGGGC
AAAATATCTGGTATTTACTCATAAAGATCATACGGCGTTCACGAAAGAAT
GGAAAATGGCCTTCCCAGCCATCCAGCGGGTCTTGCATGCGGGGGACGTG
GTAGAGAACCGAAAACATTTCTTCTTCCCCTACACCGGCGACGTCGAGAT
CAAGCTGG
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Synonyms
Publications