rna6093, rna6093 (mRNA) Nannochloropsis gaditana

Overview
Namerna6093
Unique Namerna6093
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1945
Alignment locationCM002467.1:550404..550850 +

Link to JBrowse

Properties
Property NameValue
Productsyntaxin-like protein
Orig transcript idgnl|cribi|Naga_100062g9.905.mrna
Orig protein idgnl|cribi|Naga_100062g9.905
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:550404..550850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g9gene5886Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6093rna6093-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24582.1cds6078Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6093 ID=rna6093|Name=rna6093|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp
CCTGATCAAAGGGGAGCATTCCAGGTCTCAAGGCCGGGGGGGTCGGGGGA
CATCCGGGTGGAAACTCAAGTGTGCGCATTGTGACGCATGTGTAGGGCTT
GGTACCCTGGCAGCGCGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCA
ACTTCTTCTGTCCGCGTCTACCCTCGATTCGAAGACGGGGGCAAGATACG
AGCTGGGAAGAAAATGATCTCATCCATATATTTTGTGCCCTTTCGCCAAC
CGTACAATGCATATAAACGCAGGATCAATTTATCCAGTGATAAAATGGCG
TCTGAAAGTACGACTGAGGTCGCCACACGAGAGACCGCGGAACAGCAGCC
CTTCACCGACCCGCACTGGCTCTACTACCATGGGCCCCTCCGGCGTGACA
ACGTTCTAGAGTACTTCGCTCATAGCAAATTCTATGACCGGTGCTCCTGC
AACGAAGAGCTTCGAATGCAGGGGGCTATAGATGTGCGACAGGAGCACCT
GGCGGGCATGCGGGGAGTGCAGTATTTGGCCGAGGAGGTCCCAGGGCCCG
TGCCAGAGGACCCGATCTTCGTCATCCGCAAGGTCCTCCGGACCGATTCG
GAACAGCCGCAAGTCATGGACGTGTACTACGTGCTACAGAACATGGTCTA
TCAGGCTCCCACCATTTTCTCGGTCTTGAACGCCCGGCTGCGGCGTTGTG
CCCACATGCTCAACAAAGCACAGAAAACGCTGAATCGGGCCGTCTCTTAC
GATTGCACGGGGGGGGGGATGGAGGGGGAGGGAGCTGGGACCGCGGGTTC
GGGAGGCGGGGGCAAGGGGGGCAGCGATATGTATCGAGTGGCGCGACGAG
CGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTCGAGCGGCGGCTGTGACA
GCCAGTGCGGAGATGTACCCACCCTCCTCCCCGCAATATGGCTTCCCGCC
TTACTCTTGGCAGCCGCAGTATTCCGAAGGGGAGCCCCTGGTTTTGGTCG
ACGGGCTGGACCCTAGCTATGCCTTGCCGCCCATGATGCCCCCGCCCCCG
CTGCCTCACCTCCTGATCGAGCCATCCTCTCCCACCGCCTCTTCTCCTCC
CTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGAGGAAAGGCCTCGATTTG
CCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGGCAGCCATGACGCATCCG
CATCCTGAGAACTCGGTGGCTGTGGACCGCGCCATGGGCATTTTGGTGAG
TGATGGAAGCGAGTGGTGCCGTTGGGAGTGTGAGATTCGGGCGGTGGGGT
TTTGATTATGATGATGATGGGTGGGATTTTGCATGCATGAAGTGGAGGGG
ACAAAATAGGCGGCCGAGCAATTTGTCTGCGTCGGTACGCGATCGAATTT
AAGTCGAACAAAATTTTCACCTGGGTTATATGCCGTTGCTCACGATATAT
GCGACTTGTTCTTCTTCGTGTCTTTACCTTTTGACAGAGGATGGAGGAGG
TCGCGGGGGGACCGCGCGGCCATAAGGAGGATTGAAGGTGCTTGCAACAA
GGCAACTACATGACATTGCTTGTGGACAGAAGGCAACGTGGCTCCATGCC
AAGATGGAAAGTTGCTGAGGAAAAGCAATTGCGAGAAGAGGACGCAAGCA
AGAAAGGGTCGACGAAAGTATACATGCGCGGCCGAGTACTAGACGGCATA
GTAATTTTCCCATTGTGTCTTTTCTTAACAGTCGCTTGTGGTGGCCTATC
AGTGACCCAGGGCAGAAACAGGTTTTGCAATTTTAAACGAGTGTCGGGAG
AAACAAAACCAAGAAAGACATACTAACGGCAAGTTCCCAGTGCCAAGATA
AAGGAGATAAAGCGGGGGACGTTAAAAAAGAATTAGCCAATAACGTCCTC
ATAAAGTGATGGTACCATTTCTTTGTCGCTAGCTCGTGCTCTTGC
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protein sequence of rna6093

>rna6093-protein ID=rna6093-protein|Name=rna6093|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MLALAQERELAIREVTSHLVELKDVFSDFAELVQGQQEGVDAVCRNVEVA
HAKTEQGYEAILKANEGQRAETGGCVLS
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mRNA from alignment at CM002467.1:550404..550850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6093 ID=rna6093|Name=rna6093|organism=Nannochloropsis gaditana|type=mRNA|length=447bp|location=Sequence derived from alignment at CM002467.1:550404..550850+ (Nannochloropsis gaditana)
ggctgcttcGCTCTCGGCGTTCTCCTCCGCGCAGACGAAACTGCCAGGAC
CCTACGCGGGCTGGGCCGGCCACGGGAGGGGCGAGCGCTCGGctcaggag
gaggctctgctCAAACAGCTTCAGTtccaggacgaggaggaggtgatgct
ggcgctggcgcaggagcgggagctggCGATCCGGGAGGTGACCTCGCACT
TGGTGGAGTTGAAGGACGTGTTCTCGGATTTCGCCGAGCTGGTGCAAGGG
CAGCAAGAGGGAGTGGACGCGGTCTGCCGGAACGTAGAGGTGGCCCACGC
CAAGACCGAACAGGGCTACGAGGCGATCTTGAAGGCGAAcgaggggcaga
gggcggagacggggggtTGTGTGCTGTCGTGatgggagcggggggagggt
gggccatgcgggagaaggcgccAGGATGCGCATGACGGGcttggggg
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Coding sequence (CDS) from alignment at CM002467.1:550404..550850+

>rna6093 ID=rna6093|Name=rna6093|organism=Nannochloropsis gaditana|type=CDS|length=237bp|location=Sequence derived from alignment at CM002467.1:550404..550850+ (Nannochloropsis gaditana)
atgctggcgctggcgcaggagcgggagctggCGATCCGGGAGGTGACCTC
GCACTTGGTGGAGTTGAAGGACGTGTTCTCGGATTTCGCCGAGCTGGTGC
AAGGGCAGCAAGAGGGAGTGGACGCGGTCTGCCGGAACGTAGAGGTGGCC
CACGCCAAGACCGAACAGGGCTACGAGGCGATCTTGAAGGCGAAcgaggg
gcagagggcggagacggggggtTGTGTGCTGTCGTGa
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Synonyms
Publications