rna6090, rna6090 (mRNA) Nannochloropsis gaditana

Overview
Namerna6090
Unique Namerna6090
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1002
Alignment locationCM002467.1:544990..546031 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100062g6.925.mrna
Orig protein idgnl|cribi|Naga_100062g6.925
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:544990..546031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g6gene5884Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24602.1cds6075Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6090rna6090-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6090 ID=rna6090|Name=rna6090|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp
ATGGATCAGTCGACAAGAAGAAAACCAAGGCCAGGCCTGAAGACAAGTGC
TGAGGCTTTCTTCACGACAACCGCTTCAACCGCCACGCAGAGGGAGAATC
CTGCCGCCGCCTCCAGCACCAGCAAATCATCAGGATGGAAAGACAGGCTC
AAAGAACGATGCTTAAACCACGTGCATCGGGAGCGGGGCCGGTTGATTCA
AGAGCTTCGAGGCCTGAAATCCCCACCTCCTCGTGCCCTGTCCTCGCACG
TTCCGTCAGAACCCCTTCCGTCCTCAACACTTTCTCCATCGCTTGCACTA
TTGCGGCCCTCAGAGAGCTCCAGTCCATCGCTTTGTTTTAATCCATCGTT
AATGGGAAGCACGGTCATGTCTATATTACAGAGTGAAATGAGGGTTGTCC
GTATGTCCTGCGAGGAAGGGCAGGCCCACGGCGCCGATGGAAAGCTAAAT
GATGATGGCATCAATGGTTTCAGGCATGGAGAGAATGAGGATCAATCATT
CGAGCCACGTTATCCACCACGTCCCATTTTCGCATCGAACCAAGGCCATG
CGACCCCGCCATCGGGATCTTGGTTGAAGGAAGGCGGGTCTCCGATATCA
CGGTCGGTGGCAGAAGAAGAAGACCGTGCGACCACTGAATACGAAGCGGG
AGGATTGGAAGATCTCTCAGAGATGGAGCAACTCGAGCTTATGCGCTGCA
TCGAAGAAGCGCTGGAGGCGGAAGTCATGGCGGCAGATGCGGAGGCGTTG
GAAGAGTACTCGCAGTTAGAAAGCTCCGATATCGAGGCCTCAGTGCAGGC
GCTATACGATTGTCACACCCTCTCACACGACGACATCGCCGTCCTCTGCC
CTTGTTGCAAGTCTAATTTCCTGCTTAATCACAACGAGGACATAGCTTGT
GCTTGCGGCTTAAGGGGTCGGGAACAGTGGCCGGTAGCTTGGGCTCATGA
GGTCCGCGTCGCTTTCATTGTCAAGAGATTCGCCTCGGGCGAGGTTGTGT
AA
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protein sequence of rna6090

>rna6090-protein ID=rna6090-protein|Name=rna6090|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MFGIFDKLNLFHGGAAVGSHPKLSLLSSFPSTCPLDAPAPKDEGMEKEDV
TDLPLFQEGMSLLVKLRGILSVDEEESDWQDHVEEEAETKAPFDKAQARP
MSGPERGESRRETFDQLQASMAPGDYSPCGPSVSENSPLRLLGHEPFRPR
SAASLGITSPELKAMRLRKTRRRTRDQQRQDECLRAPEAGAALLQSKGPQ
SIQDEGKTDNPAHYPAGLRLQRNAAQSEIQDVNVEPSATHSVPSLASPDP
HKRARRSLRGSARRSTRGSLV
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mRNA from alignment at CM002467.1:544990..546031-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6090 ID=rna6090|Name=rna6090|organism=Nannochloropsis gaditana|type=mRNA|length=1042bp|location=Sequence derived from alignment at CM002467.1:544990..546031- (Nannochloropsis gaditana)
AATGAGCACACTACTTGATGGGAGCTAACGTAACATTTTCTCACACGAAC
ACAGTTGTAAAGCATTACCACTATGTTTGGCATCTTTGACAAATTGAACC
TCTTCCATGGTGGCGCCGCTGTAGGGAGTCACCCTAAATTATCGTTGTTG
TCCTCATTCCCAAGTACTTGTCCACTGGACGCTCCCGCCCCCAAGGACGA
AGGAATGGAAAAAGAAGACGTGACTGACCTGCCGCTCTTTCAGGAGGGAA
TGAGCCTGCTTGTAAAACTACGAGGAATACTTAGTGTGGACGAGGAGGAG
AGTGACTGGCAAGACCATGTTGAGGAGGAGGCAGAGACAAAAGCACCCTT
TGACAAGGCCCAGGCACGGCCCATGTCCGGTCCAGAGCGCGGCGAAAGTC
GGCGTGAGACGTTCGATCAGCTCCAAGCTAGTATGGCTCCTGGTGATTAT
TCTCCTTGTGGTCCTTCGGTAAGTGAAAATTCCCCCCTTAGACTTCTCGG
GCACGAACCATTCCGTCCTCGGTCTGCGGCCTCGCTAGGGATTACTTCGC
CTGAGCTCAAAGCAATGAGGCTGCGCAAAACTCGACGTCGCACTCGCGAT
CAGCAGCGTCAAGATGAATGCTTGCGAGCGCCGGAAGCCGGTGCGGCTCT
ACTCCAGTCCAAGGGGCCGCAGTCCATCCAGGACGAAGGGAAAACAGACA
ACCCCGCGCATTACCCTGCGGGCTTGAGATTGCAGAGAAATGCGGCCCAA
AGCGAGATTCAAGATGTCAATGTTGAGCCCTCTGCCACTCATTCAGTTCC
AAGTCTCGCCTCGCCAGACCCTCACAAACGTGCCCGCCGCTCCTTGCGGG
GCTCTGCTCGCCGCAGCACGAGAGGGAGCCTCGTGTAGAGTGGAGGAAGA
TCGGGAAGGATTTGTTTCTTCACTCATCACGTTTGCAGAGCCGTAATTAA
AAAAAAGGGAACAGGGAGGGGCAATCACGTGCCGAGACACCGCTTTCCGT
ACGAGCGAAAGGAAGTCCTTCATTCGACGTTCGGTGGTACTT
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Coding sequence (CDS) from alignment at CM002467.1:544990..546031-

>rna6090 ID=rna6090|Name=rna6090|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002467.1:544990..546031- (Nannochloropsis gaditana)
ATGTTTGGCATCTTTGACAAATTGAACCTCTTCCATGGTGGCGCCGCTGT
AGGGAGTCACCCTAAATTATCGTTGTTGTCCTCATTCCCAAGTACTTGTC
CACTGGACGCTCCCGCCCCCAAGGACGAAGGAATGGAAAAAGAAGACGTG
ACTGACCTGCCGCTCTTTCAGGAGGGAATGAGCCTGCTTGTAAAACTACG
AGGAATACTTAGTGTGGACGAGGAGGAGAGTGACTGGCAAGACCATGTTG
AGGAGGAGGCAGAGACAAAAGCACCCTTTGACAAGGCCCAGGCACGGCCC
ATGTCCGGTCCAGAGCGCGGCGAAAGTCGGCGTGAGACGTTCGATCAGCT
CCAAGCTAGTATGGCTCCTGGTGATTATTCTCCTTGTGGTCCTTCGGTAA
GTGAAAATTCCCCCCTTAGACTTCTCGGGCACGAACCATTCCGTCCTCGG
TCTGCGGCCTCGCTAGGGATTACTTCGCCTGAGCTCAAAGCAATGAGGCT
GCGCAAAACTCGACGTCGCACTCGCGATCAGCAGCGTCAAGATGAATGCT
TGCGAGCGCCGGAAGCCGGTGCGGCTCTACTCCAGTCCAAGGGGCCGCAG
TCCATCCAGGACGAAGGGAAAACAGACAACCCCGCGCATTACCCTGCGGG
CTTGAGATTGCAGAGAAATGCGGCCCAAAGCGAGATTCAAGATGTCAATG
TTGAGCCCTCTGCCACTCATTCAGTTCCAAGTCTCGCCTCGCCAGACCCT
CACAAACGTGCCCGCCGCTCCTTGCGGGGCTCTGCTCGCCGCAGCACGAG
AGGGAGCCTCGTGTAG
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Synonyms
Publications