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Properties
| Property Name | Value |
|---|
| Product | mpn pad-1 domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100171g2.2661.mrna |
| Orig protein id | gnl|cribi|Naga_100171g2.2661 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:532524..534551 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6084 ID=rna6084|Name=rna6084|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp
GGATTGACAAAAGTTTTAACACTTGCTACTCTCTTAATTAACACGTGGAG
GGCTACGACACGCCCGACTCAAGGCTTCAAGCAAGCAATTACTACCAAGC
AAGCACGAGGCATGCCCCATGTCAACCCGTCTGGCTACTAGCAGTAGAGG
AGAGCTCACGATGTACCTTCTCCCCGCAATTTTCCCGCTTCGCAGGTTCA
GTCAACGACCGCCCCCAAGTGTCCACGCTTTCCCACACCCTGAAGTATTG
CCTGCTTCATGTTGGGGCGCGTCCCATCGTTTCTTGTGAGATCCTGTGCA
AGAGCCGAAGCCCCTATTACCTCCTCTGCCCTTCCAGTCCGCCTCCAGAG
CCCAAGTAGCAGGACCATGTCTAACTCAGCCACCTGTGCCAAACGCGACC
ATTCTGCTCAGCTAGGCGGCCCAATACAAAGCTGTATCGAAAGAAAACTT
CAGGCGGCGCTCGTCCCCGCCCATCTGCAAGTCATAAATGAAAGCCATAG
CCACAACGTGCCGAAGGGCTCGGAAACGCATTTCAAAGTCGTGGCGGTTT
CGTCCATGTTCGAGGGGAAAGCCTTATTGGCCCGGCATCGATTGATCAAC
GGGCTGTTGAGTGAAGAATTAGAGGCGGGTATTCACGCCCTTTCCATCGT
GGCCAAGACGGCGAGTGAATGGGAGAAAGCAGAGGGCGCAGTGCCTCCCT
CGCCAGCTTGCAGGGGAGGGAGCCAGAAATGACAGTTTTATGTACCTCCA
CATATGTCATAACGAGCGAGACGATGCAGAGCAAGAGCAAGAATTCGCCT
GCACCGTCACCGACGAAGCAAGTGCCAACGTCATGCGTTTATTTTAATTC
CTTCGGTGCCGTTTCACATGTGCCGATTCCAACGCGGACATGAATTTGCC
AAAATGAAATGCAATCTCCTATCTTTGGTGCTCTTATTCCTAGTTGTGGC
TCAACAGTTCGAGACTGCACCACTGGGACCTCGCCCCATCCGAGAGCACT
TACACAGCCTCGCGCTCAAAGTGCTCATCACCTACAGACTCAACGTTAAC
ATATCTAATACGTACATGCGATGATACAAATATATGCATGCAGCTTTCTT
ACGTGAAAACGGCTAGTTCGCTGCCCCCTACGCGCCGAAATTCGGGGCTC
GTCTCTGGATTAGACTCGCACACAAAAATCACGAGATTCCCAGGGCCCCA
GGCTCCCTACTCCGCACACCCCAGCAGGCCCTCCGATCTCTGCCCCCCTG
TCAGAACCGCATCCCGAGAAAGATGCCTAGCAAAATTGTTCGAGCGCTTA
TTCTTGTCCGAATGTCA back to topprotein sequence of rna6084 >rna6084-protein ID=rna6084-protein|Name=rna6084|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MHVYSAPNRSSMPSTSSGGASAEELTRRHLKELDRYVDVPRLNDSTRLSV
YYGMSKQVLAQAQEFRRSHDLERAYIFYKRFLRLALDCIPEHVAYKDGTF
SRDKNWLVRERRQALKALEEVNADITAETAAYHRRVPPALGVPPAPSFPS
RGASLSAASDCSGEDEDLTRRFQRLRGGGAPSYPGIDSSFGQGDTASEEN
EAPLSPVLTMPEPSAPPLFLDDGPAPQDAAENEGLSARELDAAFQSLRMA
DGDDEPSQVRRFYPSLPSSRASQPKGEERMGSPLIPGQANWFSKRGKLRP
LMLPAGLVGKFLEIADKNSRKPPDGIETCGVLAGVRDGQGLMRCTTLIIP
KQEGTSDTVSMTHEEELISFCCSGKHPMGEEGNLLQLGWIHTHPSQSCFM
SSVDIHTHCGYQTMLPEAVAVVVALVNSRRPQVGVFRLTEPEGLQLIQRC
ELRGFHPHPIPDPQIYKSHHTVVWEESGFSVVDLRS back to topmRNA from alignment at CM002467.1:532524..534551+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6084 ID=rna6084|Name=rna6084|organism=Nannochloropsis gaditana|type=mRNA|length=2028bp|location=Sequence derived from alignment at CM002467.1:532524..534551+ (Nannochloropsis gaditana)
TTCAGCAAGAAGCAACAGGCGTGGGTGGCCTACTGAGGTTTTTATAAGGC
AAGAACATGTATACTATCACTTGACGTAACCGACTAACATGCACGTGTAC
TCCGCTCCCAATCGCAGCAGCATGCCGTCGACTTCGTCCGGGGGTGCAAG
CGCGGAGGAGCTCACCAGGCGGCATCTCAAGGAGCTGGACAGGCGCGTCT
GAACCTAAATTATGCCCCggacccctctccctcttctccgctcATCTGTT
CTGCCATGTTTTCTGCAGGTATGTTGACGTGCCTAGACTCAACGACAGCA
CCCGCTTGAGTGTGTACTACGGAATGAGCAAACAAGTGCTGGCCCAGGCA
CAGGAATTTCGGAGGTCTCACGACCTCGAGCGGGTACGTGGTCCCAATGG
CTCGGAGAATGGTGTGCAAAACATGCAAAATGAGATGAAGAACCACAACA
ACCATCCGAGAGAAAGGCTTAAACTATCAGTGGCCTTTCTTGAAATGGGG
CGCCTTTTACTGCCTTTTCGCTTATCGTCGTTATCGCCTGTGACGGCTGA
ACTTCTCCCTTGCTGATCCTCACAGGCTTACATTTTCTACAAGCGCTTCC
TGCGATTGGCCCTGGATTGCATACCAGAGCACGTCGCATACAAAGACGGC
ACCTTCAGTCGCGACAAAAATTGGCTGGTCCGTGAGCGGCGCCAGGCTCT
GAAAGcgttggaggaggttaaTGCTGATATCACCGCAGAGACAGCCGCCT
ACCATCGCCGCGTCCCACCTGCCCTCGGTgtgcctcctgctccttcgtTT
CCGTCGCGAGGAGCGTCGCTGTCTGCCGCCTCGGACTGTAGcggtgagga
cgaggaccttACGCGTCGGTTTCAGAGActgcggggaggaggtgcgccCT
CGTACCCGGGGATTGACAGTTCTTTTGGCCAAGGAGACACCGCATCAGAA
GAAAACGAGGCTCCTTTGTCCCCCGTTTTGACGATGCCGGAGCCGTCGGc
gccgcccctcttccttgacGACGGACCAGCACCCCAGGACGCAGCGGAAA
ACGAGGGCTTGAGCGCCCGCGAGCTCGACGCCGCCTTCCAGTCCCTTCGG
ATGGCGGACGGGGACGATGAACCGTCTCAAGTGCGACGCttctacccctc
ccttccctcgaGCAGGGCTTCCCAGcccaagggagaggagaggatgggct
CTCCCCTGATCCCGGGCCAGGCCAACTGGTTCAGCAAACGAGGCAAGCTT
AGACCACTGATGCTTCCGGCTGGCTTGGTAGGAAAGTTCTTGGAGATCGC
CGACAAGAACAGTAGGAAGGTAGGCCGGGCGGGAGCAGGACGGGGGGCTT
GGCCGTGGAGCTCTCCTAGACCCGAGCTTTCAGACTAGGGTCCGGGCATC
AGAGAGCGCGGATCGACTCCTTTCTAAACGACTCCCCACTTCAATGATCT
CAGAgaccctctcttcttcaatAAATGTCCAGCCTCCAGATGGGATCGAG
ACCTGTGGCGTGCTCGCCGGAGTACGCGACGGCCAAGGTCTCATGCGTTG
CACTACCCTGATAATCCCCAAGCAAGAAGGCACATCAGACACAGTAAGTA
TGACACACGAAGAGGAACTGATCAGCTTCTGCTGCTCTGGGAAGCACCcg
atgggagaggaaggaaacctCCTGCAACTTGGCTGGATTCACACCCACCC
CAGTCAGAGCTGCTTCATGTCCTCAGTAGACATCCACACGCATTGCGGCT
ATCAAACCATGCTTCCCGAGGCCGTAGCCGTGGTGGTAGCCTTAGTAAAC
TCGCGGAGGCCGCAAGTGGGAGTCTTCCGTCTCACTGAGCCCGAAGGGCT
TCAACTTATCCAACGTTGTGAGCTCCGAGGTTTCCATCCCCATCCCATAC
CCGATCCTCAAATTTACAAAAGTCATCACACTGTCGTTTGGGAGGAATCA
GGATTTTCTGTTGTGGATCTTAGATCGTAAACGCATCAAAACCAGACAGA
GAGAAGCAACAAATAGTACTGATTCTGA back to topCoding sequence (CDS) from alignment at CM002467.1:532524..534551+ >rna6084 ID=rna6084|Name=rna6084|organism=Nannochloropsis gaditana|type=CDS|length=5844bp|location=Sequence derived from alignment at CM002467.1:532524..534551+ (Nannochloropsis gaditana)
ATGCACGTGTACTCCGCTCCCAATCGCAGCAGCATGCCGTCGACTTCGTC
CGGGGGTGCAAGCGCGGAGGAGCTCACCAGGCGGCATCTCAAGGAGCTGG
ACAGGTATGTTGACGTGCCTAGACTCAACGACAGCACCCGCTTGAGTGTG
TACTACGGAATGAGCAAACAAGTGCTGGCCCAGGCACAGGAATTTCGGAG
GTCTCACGACCTCGAGCGGGCTTACATTTTCTACAAGCGCTTCCTGCGAT
TGGCCCTGGATTGCATACCAGAGCACGTCGCATACAAAGACGGCACCTTC
AGTCGCGACAAAAATTGGCTGGTCCGTGAGCGGCGCCAGGCTCTGAAAGc
gttggaggaggttaaTGCTGATATCACCGCAGAGACAGCCGCCTACCATC
GCCGCGTCCCACCTGCCCTCGGTgtgcctcctgctccttcgtTTCCGTCG
CGAGGAGCGTCGCTGTCTGCCGCCTCGGACTGTAGcggtgaggacgagga
ccttACGCGTCGGTTTCAGAGActgcggggaggaggtgcgccCTCGTACC
CGGGGATTGACAGTTCTTTTGGCCAAGGAGACACCGCATCAGAAGAAAAC
GAGGCTCCTTTGTCCCCCGTTTTGACGATGCCGGAGCCGTCGGcgccgcc
cctcttccttgacGACGGACCAGCACCCCAGGACGCAGCGGAAAACGAGG
GCTTGAGCGCCCGCGAGCTCGACGCCGCCTTCCAGTCCCTTCGGATGGCG
GACGGGGACGATGAACCGTCTCAAGTGCGACGCttctacccctcccttcc
ctcgaGCAGGGCTTCCCAGcccaagggagaggagaggatgggctCTCCCC
TGATCCCGGGCCAGGCCAACTGGTTCAGCAAACGAGGCAAGCTTAGACCA
CTGATGCTTCCGGCTGGCTTGGTAGGAAAGTTCTTGGAGATCGCCGACAA
GAACAGTAGGAAGCCTCCAGATGGGATCGAGACCTGTGGCGTGCTCGCCG
GAGTACGCGACGGCCAAGGTCTCATGCGTTGCACTACCCTGATAATCCCC
AAGCAAGAAGGCACATCAGACACAGTAAGTATGACACACGAAGAGGAACT
GATCAGCTTCTGCTGCTCTGGGAAGCACCcgatgggagaggaaggaaacc
tCCTGCAACTTGGCTGGATTCACACCCACCCCAGTCAGAGCTGCTTCATG
TCCTCAGTAGACATCCACACGCATTGCGGCTATCAAACCATGCTTCCCGA
GGCCGTAGCCGTGGTGGTAGCCTTAGTAAACTCGCGGAGGCCGCAAGTGG
GAGTCTTCCGTCTCACTGAGCCCGAAGGGCTTCAACTTATCCAACGTTGT
GAGCTCCGAGGTTTCCATCCCCATCCCATACCCGATCCTCAAATTTACAA
AAGTCATCACACTGTCGTTTGGGAGGAATCAGGATTTTCTGTTGTGGATC
TTAGATCGTAAATGCACGTGTACTCCGCTCCCAATCGCAGCAGCATGCCG
TCGACTTCGTCCGGGGGTGCAAGCGCGGAGGAGCTCACCAGGCGGCATCT
CAAGGAGCTGGACAGGTATGTTGACGTGCCTAGACTCAACGACAGCACCC
GCTTGAGTGTGTACTACGGAATGAGCAAACAAGTGCTGGCCCAGGCACAG
GAATTTCGGAGGTCTCACGACCTCGAGCGGGCTTACATTTTCTACAAGCG
CTTCCTGCGATTGGCCCTGGATTGCATACCAGAGCACGTCGCATACAAAG
ACGGCACCTTCAGTCGCGACAAAAATTGGCTGGTCCGTGAGCGGCGCCAG
GCTCTGAAAGcgttggaggaggttaaTGCTGATATCACCGCAGAGACAGC
CGCCTACCATCGCCGCGTCCCACCTGCCCTCGGTgtgcctcctgctcctt
cgtTTCCGTCGCGAGGAGCGTCGCTGTCTGCCGCCTCGGACTGTAGcggt
gaggacgaggaccttACGCGTCGGTTTCAGAGActgcggggaggaggtgc
gccCTCGTACCCGGGGATTGACAGTTCTTTTGGCCAAGGAGACACCGCAT
CAGAAGAAAACGAGGCTCCTTTGTCCCCCGTTTTGACGATGCCGGAGCCG
TCGGcgccgcccctcttccttgacGACGGACCAGCACCCCAGGACGCAGC
GGAAAACGAGGGCTTGAGCGCCCGCGAGCTCGACGCCGCCTTCCAGTCCC
TTCGGATGGCGGACGGGGACGATGAACCGTCTCAAGTGCGACGCttctac
ccctcccttccctcgaGCAGGGCTTCCCAGcccaagggagaggagaggat
gggctCTCCCCTGATCCCGGGCCAGGCCAACTGGTTCAGCAAACGAGGCA
AGCTTAGACCACTGATGCTTCCGGCTGGCTTGGTAGGAAAGTTCTTGGAG
ATCGCCGACAAGAACAGTAGGAAGCCTCCAGATGGGATCGAGACCTGTGG
CGTGCTCGCCGGAGTACGCGACGGCCAAGGTCTCATGCGTTGCACTACCC
TGATAATCCCCAAGCAAGAAGGCACATCAGACACAGTAAGTATGACACAC
GAAGAGGAACTGATCAGCTTCTGCTGCTCTGGGAAGCACCcgatgggaga
ggaaggaaacctCCTGCAACTTGGCTGGATTCACACCCACCCCAGTCAGA
GCTGCTTCATGTCCTCAGTAGACATCCACACGCATTGCGGCTATCAAACC
ATGCTTCCCGAGGCCGTAGCCGTGGTGGTAGCCTTAGTAAACTCGCGGAG
GCCGCAAGTGGGAGTCTTCCGTCTCACTGAGCCCGAAGGGCTTCAACTTA
TCCAACGTTGTGAGCTCCGAGGTTTCCATCCCCATCCCATACCCGATCCT
CAAATTTACAAAAGTCATCACACTGTCGTTTGGGAGGAATCAGGATTTTC
TGTTGTGGATCTTAGATCGTAAATGCACGTGTACTCCGCTCCCAATCGCA
GCAGCATGCCGTCGACTTCGTCCGGGGGTGCAAGCGCGGAGGAGCTCACC
AGGCGGCATCTCAAGGAGCTGGACAGGTATGTTGACGTGCCTAGACTCAA
CGACAGCACCCGCTTGAGTGTGTACTACGGAATGAGCAAACAAGTGCTGG
CCCAGGCACAGGAATTTCGGAGGTCTCACGACCTCGAGCGGGCTTACATT
TTCTACAAGCGCTTCCTGCGATTGGCCCTGGATTGCATACCAGAGCACGT
CGCATACAAAGACGGCACCTTCAGTCGCGACAAAAATTGGCTGGTCCGTG
AGCGGCGCCAGGCTCTGAAAGcgttggaggaggttaaTGCTGATATCACC
GCAGAGACAGCCGCCTACCATCGCCGCGTCCCACCTGCCCTCGGTgtgcc
tcctgctccttcgtTTCCGTCGCGAGGAGCGTCGCTGTCTGCCGCCTCGG
ACTGTAGcggtgaggacgaggaccttACGCGTCGGTTTCAGAGActgcgg
ggaggaggtgcgccCTCGTACCCGGGGATTGACAGTTCTTTTGGCCAAGG
AGACACCGCATCAGAAGAAAACGAGGCTCCTTTGTCCCCCGTTTTGACGA
TGCCGGAGCCGTCGGcgccgcccctcttccttgacGACGGACCAGCACCC
CAGGACGCAGCGGAAAACGAGGGCTTGAGCGCCCGCGAGCTCGACGCCGC
CTTCCAGTCCCTTCGGATGGCGGACGGGGACGATGAACCGTCTCAAGTGC
GACGCttctacccctcccttccctcgaGCAGGGCTTCCCAGcccaaggga
gaggagaggatgggctCTCCCCTGATCCCGGGCCAGGCCAACTGGTTCAG
CAAACGAGGCAAGCTTAGACCACTGATGCTTCCGGCTGGCTTGGTAGGAA
AGTTCTTGGAGATCGCCGACAAGAACAGTAGGAAGCCTCCAGATGGGATC
GAGACCTGTGGCGTGCTCGCCGGAGTACGCGACGGCCAAGGTCTCATGCG
TTGCACTACCCTGATAATCCCCAAGCAAGAAGGCACATCAGACACAGTAA
GTATGACACACGAAGAGGAACTGATCAGCTTCTGCTGCTCTGGGAAGCAC
CcgatgggagaggaaggaaacctCCTGCAACTTGGCTGGATTCACACCCA
CCCCAGTCAGAGCTGCTTCATGTCCTCAGTAGACATCCACACGCATTGCG
GCTATCAAACCATGCTTCCCGAGGCCGTAGCCGTGGTGGTAGCCTTAGTA
AACTCGCGGAGGCCGCAAGTGGGAGTCTTCCGTCTCACTGAGCCCGAAGG
GCTTCAACTTATCCAACGTTGTGAGCTCCGAGGTTTCCATCCCCATCCCA
TACCCGATCCTCAAATTTACAAAAGTCATCACACTGTCGTTTGGGAGGAA
TCAGGATTTTCTGTTGTGGATCTTAGATCGTAAATGCACGTGTACTCCGC
TCCCAATCGCAGCAGCATGCCGTCGACTTCGTCCGGGGGTGCAAGCGCGG
AGGAGCTCACCAGGCGGCATCTCAAGGAGCTGGACAGGTATGTTGACGTG
CCTAGACTCAACGACAGCACCCGCTTGAGTGTGTACTACGGAATGAGCAA
ACAAGTGCTGGCCCAGGCACAGGAATTTCGGAGGTCTCACGACCTCGAGC
GGGCTTACATTTTCTACAAGCGCTTCCTGCGATTGGCCCTGGATTGCATA
CCAGAGCACGTCGCATACAAAGACGGCACCTTCAGTCGCGACAAAAATTG
GCTGGTCCGTGAGCGGCGCCAGGCTCTGAAAGcgttggaggaggttaaTG
CTGATATCACCGCAGAGACAGCCGCCTACCATCGCCGCGTCCCACCTGCC
CTCGGTgtgcctcctgctccttcgtTTCCGTCGCGAGGAGCGTCGCTGTC
TGCCGCCTCGGACTGTAGcggtgaggacgaggaccttACGCGTCGGTTTC
AGAGActgcggggaggaggtgcgccCTCGTACCCGGGGATTGACAGTTCT
TTTGGCCAAGGAGACACCGCATCAGAAGAAAACGAGGCTCCTTTGTCCCC
CGTTTTGACGATGCCGGAGCCGTCGGcgccgcccctcttccttgacGACG
GACCAGCACCCCAGGACGCAGCGGAAAACGAGGGCTTGAGCGCCCGCGAG
CTCGACGCCGCCTTCCAGTCCCTTCGGATGGCGGACGGGGACGATGAACC
GTCTCAAGTGCGACGCttctacccctcccttccctcgaGCAGGGCTTCCC
AGcccaagggagaggagaggatgggctCTCCCCTGATCCCGGGCCAGGCC
AACTGGTTCAGCAAACGAGGCAAGCTTAGACCACTGATGCTTCCGGCTGG
CTTGGTAGGAAAGTTCTTGGAGATCGCCGACAAGAACAGTAGGAAGCCTC
CAGATGGGATCGAGACCTGTGGCGTGCTCGCCGGAGTACGCGACGGCCAA
GGTCTCATGCGTTGCACTACCCTGATAATCCCCAAGCAAGAAGGCACATC
AGACACAGTAAGTATGACACACGAAGAGGAACTGATCAGCTTCTGCTGCT
CTGGGAAGCACCcgatgggagaggaaggaaacctCCTGCAACTTGGCTGG
ATTCACACCCACCCCAGTCAGAGCTGCTTCATGTCCTCAGTAGACATCCA
CACGCATTGCGGCTATCAAACCATGCTTCCCGAGGCCGTAGCCGTGGTGG
TAGCCTTAGTAAACTCGCGGAGGCCGCAAGTGGGAGTCTTCCGTCTCACT
GAGCCCGAAGGGCTTCAACTTATCCAACGTTGTGAGCTCCGAGGTTTCCA
TCCCCATCCCATACCCGATCCTCAAATTTACAAAAGTCATCACACTGTCG
TTTGGGAGGAATCAGGATTTTCTGTTGTGGATCTTAGATCGTAA back to top
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