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Properties
Property Name | Value |
Product | peptidase c13-like protein |
Orig transcript id | gnl|cribi|Naga_100171g6.2671.mrna |
Orig protein id | gnl|cribi|Naga_100171g6.2671 |
Gbkey | mRNA |
Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002467.1 | supercontig | CM002467.1:527089..529203 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6080 ID=rna6080|Name=rna6080|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp AGTCACTCTTCCGTTCACTTGCGAGTGCGCCATGCCCCCTGAACAATGAC GTCAATACTGAATTCTTTGGCACTTTGCAATGAGCACGACTCCTGAAGTA TGTAGGGTTACGGAGGCTCTTGTTGTCATTCTTGGACGAGAAGATACTTC CGGTTCCAGGAAGCTTCCAAACCTGCCCCCCTCACTCCTTTGTTCTTTCT CAAATCTCACGCCTTTGCATCCTGTATTTTCTTTGTACAATCCGCATGCT CATCACGTGGACCGAAATGCTCCTTTTAAATCCTTTTGCAGTGAACACAG ATCATCATGCTTCGACAAGTCTTGCGTCGTGCTCCCAGCCGGGCACTTGC GATGCAGATGCGTGGCATGGCAGGTAAGCACTACAGATCCTCAGTGGAAC ATTTATAAGGATAAGGAAGGCAATATGACTATTGTGAGGGTGATATTAGC TGCATGGTGAATTGAAACGCTGCCGGCAGACGACTTTGGGGATGAGAGTG AAGTGAGTGCTCGTACACCTCCTGGGAGAATGTTCGTGGCCACGGGAATC AGTCAGGTCATCACCTTAAATTTAAAGCTCGTGTCGTTTTTATGAGCCAT GGAATCTTTGGCACGCCACTTTATTGACAAACTTCTATGATCACGTCCCT TCTCTCCTCACCTCTTCTGCGCCACGGTTTCTTGCCCCTAACCTCCCCAG GCGGGAAGGACGTTCGGTTTGGCGTGGACGGCCGCGCGCAGATGCTCATG GGCGTTGACAAGCTGGCGGACGCCGTACAAGTGACGTTGGGACCAAAAGG CCGGAACGCCATCATCGACCAGCCGTTCGGAGCCCCCAAGATCACCAAGG ACGGCGTGACGGTGGCGAAGAGTATCGAATTTAAGGAGCGTTTTGTCAAC ATGGGCGCCGCGCTCGTGCGGCAGGTGGCGAGCAAGACCAACGATGTGGC CGGGGACGGGACCACCACCGCCACGGTGTTGACGCGGGCCATCTTCTCGG AGGGTTGCAAGGCGGTGGCGGCCGGGCTGAACCCGATGGACCTGAGGAGA GGCACGCAGCTCGCCGTCGACCACGTGGTGGGCGTTTTGAACCAGATCTC CCGCGCCGTCACCTCCAAGGCGGAGGTGTCCCAGGTGGGAACGATCTCGG CGAACGGGGAGAAAGTAATTGGAGACCTGCTGGCGGACGCGATGGAGCGG GTGGGCAAGGAGGGCGTGATCACCGTCCAGGACGGAAAGACGCTTCACAA CGAGCTGGAGGTGGTGGAGGGGATGAAATTCGACCGGGGCTACATCTCCC CCTATTTCATCACCGACAACAAGACCCAGACGGCGGAGCTTGAGAATCCC TACATCCTGCTGGTCGAGAAGAAGATCACCTCCATTCAGTCCCTCATCCC GCTCCTGGAGATGGTGGTGAAGAGCCAGCGGCCCCTGCTCATCATCGCCG AAGACGTTGAGTCCGAGGCTCTGGCTACGCTGGTGGTCAACAAACTGCGG GCCGGGATCAAGGTAGCGGCCGTGAAGGCTCCAGGCTTTGGAGACAACAG GAAGGCGACGCTCCAGGACATCGCGGTGCTGACTGGGGGGCAGGTGATCA GTGAGGACCTGGGCCTGAAGGTGGAGAATACCACGGAAGACATGCTGGGC ACTTCCAAGAAGGTGACAGTCTCTAAGGATGACACCCTCATTTTGCACGG AAACGGGGCCCGGGACGCCATCGACGAGCGCTGCTTGCTGTTGAAGGACT CCATCGCCGCCACGGCCTCGGACTACGAGAAGGAGAAGCTACAGGAGCGC TTGGCGAAGCTGTCGGGGGGCGTGGCGGTGATTAAGGTGGGCGGGGCCTC GGAGGTGGAGGTGAATGAGAAGAAGGACCGCGTGGTGGACGCTTTGAATG CGACGCGGGCGGCGGTGGAGCAGGGCATTGTCCCCGGGGGCGGGTTGGCC CTGTTGTGGGCTTCCAAGCAGCTGGAGGACGTCAAGGCGAAGGTCTCGAA CATGGACCAGCGCATCGGCGTCGAGATCATTGAGAAGGCGCTGATCGCAC CCGTGAAATCCATCGCAAACAACGCCGGTGTGGAAGGGGCGGTGGTAGTG GGGGAACTCATGAAGAAGGACAAACCAGAGCTGGGGTACAACGCGCAGAC AGGCGAGTACGTTGACATGTTCGAGGCAGGGATTATCGACCCGACGAAGG TGGTGCGAACGGCGCTGGTAGACGCCCAGTCGGTGGCGGCGTTGATGATT ACGACGGAGGCCATGGTGGCGGACCTTCCCAAAGACGAGGGGGACGCACC GGCGATGCCGGGGATGGGAGGTATGGGAGGCATGGGTGGCATGGGTGGCA TGGGCTTCTAGACGTCGGTGTGCACGGAGGTTGCCTGGTGGGGAAGGAAG GGGAGATGGGGAGACGCGAAGGAGCGGCAGTTGGGGGACTGGCCTGGGAT ACAGGTGTTGGATTGGAGAAGTGATGGAAGAGCAAGTGCGGAACGGGGCG AGCATTGCCCAATATAGAGAAGCGAAAGAAGGCGGGTGATAGCGAGATAG ACATGTGGATGGGGAATGCAGCGATCTTGCTGAGGATGAAAAGGAGTGGT TAATCAACCAGGCTTGATTTTGGTAAATTACCTGGGCTGTCCATTTTCGC CCGTCCTTTAGCTTCTGGCAATGTGTGGGAAGGATAGCGGTTCCAAAACC TATAAACAAGTATATCCGGAAGTGCATCCAGTAATGTGGTCGCGTACGTC CAGAAATTGCAACTTAGTAATATCCATGCCGATTGATAAACCATTGGACA TTCTCCGTCTCTCAAACATGACAAAAGGTCCCCTCCTAGTATTCTTTTTT GCTATTTACATCTCGCACATCCTATCTATGTAAGCCTTAACAGCAATCCT ATCAATCATGATGTATCCATAAGCGCCACCTTTCC back to topprotein sequence of rna6080 >rna6080-protein ID=rna6080-protein|Name=rna6080|organism=Nannochloropsis gaditana|type=polypeptide|length=413bp MTRVSFLLLLCLCLMTFFFANASGVEKGDTWVVLACTSRFWFNYRHVANA LSFYQVVRRLGVPDSQIVLMLADDIPCNARNARPGGVYHSTTHTIDLCAN GLEVDYKNEEVTVENFVRVLTGRHPPGWPISKRLGSGNTSRVFIYMTGHG GDEFLKFHNHEEISSEDLAHTLQDMKTAGRYQDLFFVVDTCQGGTLFRRF RTPGVLAVGSSGQGENSFAHQNDMVLGVALVDRFTDASCQYLHKLADRAT APQLSSPLGLLSQVPLSMLLGSYNPVQLKSTPVLRSDLFEFEASREDEAE EVGDLGNHRGAATGTDSRLAQTAVTHFFGQEERLRVVSILEAAKDEEIES VGSRNTCSRTVEAIPVRLSQAHIDTLSTSPANHFEASYDRNSIMLSLLSL AMCAMNLRMCRIE back to topmRNA from alignment at CM002467.1:527089..529203+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6080 ID=rna6080|Name=rna6080|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp|location=Sequence derived from alignment at CM002467.1:527089..529203+ (Nannochloropsis gaditana) ATGACACGCCTCGAGTTGCAGGTGCTTCCttcaagaggagaaggcttcGC
GCAAAGTAGTCTTTTCTATGATTTAGAAGAGTGCGTAAGTGCAGAATATA
CTTTTAGGGTAAAAAAGCATGGGTCAAGACAGTCCGCCCTTCGAGGGTAC
CTGTCTGCGTCACGTCagcctacccggaggaagacCCCAAAAGGCGACTC
TAGCTTGCTCCGACTTGTAAACATCCTGTCAGGACACTTCTCACAAGGCA
CCAATGTTTCAGTAACTATCCAGTCTACTACTTCTTTCCAATCGCATCAT
GGTAGATCAGGACAAGACTTGCGACAGGCTGGCGTTCCTCATCTGAAGTG
GAGCGCGTCCTGCAGCGATGACTCGAGTGTCCTTCCTACTGCTGCTTTGC
TTATGCCTCATGACATTTTTCTTCGCCAATGCAAGCGGCGTGGAGAAGGG
TGATACTTGGGTTGTACTGGTACGTCATGTTGTCCTCGATCATGCTCCGG
GTGTCCTCCAGTTCTCATTGTTTCCCTTTGTCCTCGTAAGGCATGCACAT
CCCGTTTTTGGTTCAACTATCGCCACGTCGCCAATGCCCTGTCCTTTTAC
CAAGTGGTCAGGCGTCTCGGCGTCCCGGACAGTCAGATCGTGCTGATGCT
TGCGGATGACATACCATGTAATGCGCGAAACGCTCGACCAGGTCTGTGAA
GATCCGTTTTGGTCCCTTCCTCGACATGGCCTCACAGCCCTCTCTTGATT
CCACACCTCATGCCTAGGCGGGGTATACCATTCGACCACCCACACGATAG
ACCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAAACGAGGAAGTGACA
GTTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCATCCGCCTGGGTGGCC
CATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCGCGTGTTCATTTACA
TGACGGGTCACGGCGGCGACGAATTTCTGAAATTTCACAACCATGAGGAA
ATCAGCAGCGAGGATCTGGTAAGCCGAAACTAGGACTGGATGATGATCGC
TTTGCGATACTGGAGAAGACCCGGAAGCCCGAAGTACTCCTCCGACCTGA
TTAAACCGTGTGCGTTGCACACATAGTCCTCCCTTTGCCATACCAATCGC
TTCCTCATACGTAACGCCGGCCCCCTATCAGGCGCACACGCTCCAGGACA
TGAAGACCGCGGGCCGTTACCAAGACTTGTTCTTCGTTGTCGATACCTGT
CAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAGT
GGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGCATCAGAATGACATGG
TCCTCGGGGTTGCCCTTGTGGACCGATTTACAGACGCTTCGTGTCAGTAC
CTGCATAAGCTGGCCGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTTT
GGGTCTCTTATCTCAGGTACCTTTGTCAATGCTGCTCGGATCTTACAACC
CAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATTC
GAAGCCTCtagagaggacgaggcagaggaggtcggCGATCTTGGTAACCA
TAGAGGCGCCGCCACGGGAACCGACTCTCGACTGGCTCAGACGGCAGTGA
CGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGAA
GCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTAG
CAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGCAAGCGCACATCGATA
CTTTAAGCACATCACCTGCAAATCATTTTGAAGCATCGTATGACAGAAAC
AGTATCATGCTCTCACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGAG
GATGTGTAGAATAGAATGACTAATGGAGTGTACTTTTGTTTGGGAACCTG
GATAAATGTATCAACGTCGGCAACCGCTTTATGGTAAGCTGTGGCTTTTC
CCTGCGACCagacttccctcccttagtAATTGTCAATGTTTATGTAGATA
ATAATAAAGAAATTTGCACGACGTAAATGGTTTTCATTGCCGTGCCACCC
ACCCAAGCCTCATCC back to topCoding sequence (CDS) from alignment at CM002467.1:527089..529203+ >rna6080 ID=rna6080|Name=rna6080|organism=Nannochloropsis gaditana|type=CDS|length=4968bp|location=Sequence derived from alignment at CM002467.1:527089..529203+ (Nannochloropsis gaditana) ATGACTCGAGTGTCCTTCCTACTGCTGCTTTGCTTATGCCTCATGACATT TTTCTTCGCCAATGCAAGCGGCGTGGAGAAGGGTGATACTTGGGTTGTAC TGGCATGCACATCCCGTTTTTGGTTCAACTATCGCCACGTCGCCAATGCC CTGTCCTTTTACCAAGTGGTCAGGCGTCTCGGCGTCCCGGACAGTCAGAT CGTGCTGATGCTTGCGGATGACATACCATGTAATGCGCGAAACGCTCGAC CAGGCGGGGTATACCATTCGACCACCCACACGATAGACCTCTGTGCAAAC GGCTTGGAAGTGGACTACAAAAACGAGGAAGTGACAGTTGAAAACTTTGT GCGCGTCTTGACCGGGCGGCATCCGCCTGGGTGGCCCATTTCCAAACGCC TGGGAAGCGGCAACACAAGCCGCGTGTTCATTTACATGACGGGTCACGGC GGCGACGAATTTCTGAAATTTCACAACCATGAGGAAATCAGCAGCGAGGA TCTGGCGCACACGCTCCAGGACATGAAGACCGCGGGCCGTTACCAAGACT TGTTCTTCGTTGTCGATACCTGTCAGGGGGGAACGCTCTTCCGGCGCTTC CGGACCCCTGGCGTGCTGGCAGTGGGCAGCAGTGGTCAAGGCGAGAATTC ATTCGCGCATCAGAATGACATGGTCCTCGGGGTTGCCCTTGTGGACCGAT TTACAGACGCTTCGTGTCAGTACCTGCATAAGCTGGCCGACAGAGCGACG GCCCCTCAGCTGAGCTCGCCTTTGGGTCTCTTATCTCAGGTACCTTTGTC AATGCTGCTCGGATCTTACAACCCAGTTCAACTAAAGTCAACGCCTGTGC TTCGTTCGGACCTGTTCGAATTCGAAGCCTCtagagaggacgaggcagag gaggtcggCGATCTTGGTAACCATAGAGGCGCCGCCACGGGAACCGACTC TCGACTGGCTCAGACGGCAGTGACGCATTTTTTTGGGCAAGAGGAGCGTC TACGAGTAGTTTCGATACTAGAAGCTGCAAAGGATGAGGAAATTGAGAGC GTTGGAAGCAGAAACACGTGTAGCAGGACAGTCGAGGCTATCCCAGTCCG CCTTTCGCAAGCGCACATCGATACTTTAAGCACATCACCTGCAAATCATT TTGAAGCATCGTATGACAGAAACAGTATCATGCTCTCACTGTTGAGTCTT GCGATGTGTGCCATGAATTTGAGGATGTGTAGAATAGAATGAATGACTCG AGTGTCCTTCCTACTGCTGCTTTGCTTATGCCTCATGACATTTTTCTTCG CCAATGCAAGCGGCGTGGAGAAGGGTGATACTTGGGTTGTACTGGCATGC ACATCCCGTTTTTGGTTCAACTATCGCCACGTCGCCAATGCCCTGTCCTT TTACCAAGTGGTCAGGCGTCTCGGCGTCCCGGACAGTCAGATCGTGCTGA TGCTTGCGGATGACATACCATGTAATGCGCGAAACGCTCGACCAGGCGGG GTATACCATTCGACCACCCACACGATAGACCTCTGTGCAAACGGCTTGGA AGTGGACTACAAAAACGAGGAAGTGACAGTTGAAAACTTTGTGCGCGTCT TGACCGGGCGGCATCCGCCTGGGTGGCCCATTTCCAAACGCCTGGGAAGC GGCAACACAAGCCGCGTGTTCATTTACATGACGGGTCACGGCGGCGACGA ATTTCTGAAATTTCACAACCATGAGGAAATCAGCAGCGAGGATCTGGCGC ACACGCTCCAGGACATGAAGACCGCGGGCCGTTACCAAGACTTGTTCTTC GTTGTCGATACCTGTCAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCC TGGCGTGCTGGCAGTGGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGC ATCAGAATGACATGGTCCTCGGGGTTGCCCTTGTGGACCGATTTACAGAC GCTTCGTGTCAGTACCTGCATAAGCTGGCCGACAGAGCGACGGCCCCTCA GCTGAGCTCGCCTTTGGGTCTCTTATCTCAGGTACCTTTGTCAATGCTGC TCGGATCTTACAACCCAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCG GACCTGTTCGAATTCGAAGCCTCtagagaggacgaggcagaggaggtcgg CGATCTTGGTAACCATAGAGGCGCCGCCACGGGAACCGACTCTCGACTGG CTCAGACGGCAGTGACGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTA GTTTCGATACTAGAAGCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAG CAGAAACACGTGTAGCAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGC AAGCGCACATCGATACTTTAAGCACATCACCTGCAAATCATTTTGAAGCA TCGTATGACAGAAACAGTATCATGCTCTCACTGTTGAGTCTTGCGATGTG TGCCATGAATTTGAGGATGTGTAGAATAGAATGAATGACTCGAGTGTCCT TCCTACTGCTGCTTTGCTTATGCCTCATGACATTTTTCTTCGCCAATGCA AGCGGCGTGGAGAAGGGTGATACTTGGGTTGTACTGGCATGCACATCCCG TTTTTGGTTCAACTATCGCCACGTCGCCAATGCCCTGTCCTTTTACCAAG TGGTCAGGCGTCTCGGCGTCCCGGACAGTCAGATCGTGCTGATGCTTGCG GATGACATACCATGTAATGCGCGAAACGCTCGACCAGGCGGGGTATACCA TTCGACCACCCACACGATAGACCTCTGTGCAAACGGCTTGGAAGTGGACT ACAAAAACGAGGAAGTGACAGTTGAAAACTTTGTGCGCGTCTTGACCGGG CGGCATCCGCCTGGGTGGCCCATTTCCAAACGCCTGGGAAGCGGCAACAC AAGCCGCGTGTTCATTTACATGACGGGTCACGGCGGCGACGAATTTCTGA AATTTCACAACCATGAGGAAATCAGCAGCGAGGATCTGGCGCACACGCTC CAGGACATGAAGACCGCGGGCCGTTACCAAGACTTGTTCTTCGTTGTCGA TACCTGTCAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGC TGGCAGTGGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGCATCAGAAT GACATGGTCCTCGGGGTTGCCCTTGTGGACCGATTTACAGACGCTTCGTG TCAGTACCTGCATAAGCTGGCCGACAGAGCGACGGCCCCTCAGCTGAGCT CGCCTTTGGGTCTCTTATCTCAGGTACCTTTGTCAATGCTGCTCGGATCT TACAACCCAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCGGACCTGTT CGAATTCGAAGCCTCtagagaggacgaggcagaggaggtcggCGATCTTG GTAACCATAGAGGCGCCGCCACGGGAACCGACTCTCGACTGGCTCAGACG GCAGTGACGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTAGTTTCGAT ACTAGAAGCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAGCAGAAACA CGTGTAGCAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGCAAGCGCAC ATCGATACTTTAAGCACATCACCTGCAAATCATTTTGAAGCATCGTATGA CAGAAACAGTATCATGCTCTCACTGTTGAGTCTTGCGATGTGTGCCATGA ATTTGAGGATGTGTAGAATAGAATGAATGACTCGAGTGTCCTTCCTACTG CTGCTTTGCTTATGCCTCATGACATTTTTCTTCGCCAATGCAAGCGGCGT GGAGAAGGGTGATACTTGGGTTGTACTGGCATGCACATCCCGTTTTTGGT TCAACTATCGCCACGTCGCCAATGCCCTGTCCTTTTACCAAGTGGTCAGG CGTCTCGGCGTCCCGGACAGTCAGATCGTGCTGATGCTTGCGGATGACAT ACCATGTAATGCGCGAAACGCTCGACCAGGCGGGGTATACCATTCGACCA CCCACACGATAGACCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAAAC GAGGAAGTGACAGTTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCATCC GCCTGGGTGGCCCATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCGCG TGTTCATTTACATGACGGGTCACGGCGGCGACGAATTTCTGAAATTTCAC AACCATGAGGAAATCAGCAGCGAGGATCTGGCGCACACGCTCCAGGACAT GAAGACCGCGGGCCGTTACCAAGACTTGTTCTTCGTTGTCGATACCTGTC AGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAGTG GGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGCATCAGAATGACATGGT CCTCGGGGTTGCCCTTGTGGACCGATTTACAGACGCTTCGTGTCAGTACC TGCATAAGCTGGCCGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTTTG GGTCTCTTATCTCAGGTACCTTTGTCAATGCTGCTCGGATCTTACAACCC AGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATTCG AAGCCTCtagagaggacgaggcagaggaggtcggCGATCTTGGTAACCAT AGAGGCGCCGCCACGGGAACCGACTCTCGACTGGCTCAGACGGCAGTGAC GCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGAAG CTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTAGC AGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGCAAGCGCACATCGATAC TTTAAGCACATCACCTGCAAATCATTTTGAAGCATCGTATGACAGAAACA GTATCATGCTCTCACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGAGG ATGTGTAGAATAGAATGA back to top
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