rna6072, rna6072 (mRNA) Nannochloropsis gaditana

Overview
Namerna6072
Unique Namerna6072
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3485
Alignment locationCM002467.1:504549..504881 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103392g1.4619.mrna
Orig protein idgnl|cribi|Naga_103392g1.4619
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:504549..504881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103392g1gene5867Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6072rna6072-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24616.1cds6057Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6072 ID=rna6072|Name=rna6072|organism=Nannochloropsis gaditana|type=mRNA|length=3485bp
ACTAGGACCTTTCTTGTATCGATTTGCGAAGTGAAGACACAAAGGCAGCT
CTTGCGCTCTACGTCTACACGATGGCTTCATCCTCCTCGTCTATTGAGGC
AGGCAACGGGGGCAAAGAGCAGCAGCTACGGCCCTCCCGCTTCACTAAAA
AGACCGCAGTTTTGGCTCTGGTCGGAGGTACTCTTATCGTGGGAGCCGTG
TTTGGGGGTGTCTTCGGCTCCCGGGCTGTGGAGAAAAAAAGACGGGTACC
CATCAAGGTGGAAGATGTAACGTATGCAATGGTCACTGAGGGCTTCATGA
ACGCTGCCGTGGTGCCTGTGCCCCAAAACATCCTGCAAAAAGCCAACACT
TCCTCTGCAAGCTCGCCCGCACTCACAACATTGGCAACGGGTGACAAAGC
CCCCGCAGGAAATCCCCTTCAAGGTGAAACCTCTATTTTTAGCTTTGACT
ACTGGTTTGGTGATCAGGGTATCGCAGGCATTCCCATGTTCGACCCCATG
CCTTTGGTGCTGCCTCCTGAGGCTACGACCATTCCGTCTTGGGTGTCGGC
CGCTCAATTCCGCAATACCGAAGGCCGTGTCTTGTGCTACGCCAGCACGG
GGAAGGAAGTGATAGAAATGGTCAGCGGGGACGAGAGTCCGTGCGAAGTC
ATCGTTTTGACGAACGATCGGTTTACGCCTTACTCAATCGACAAGATCAT
GAACGTCACCAAGCCCAAGATCATCATCGGTCGGCCTATCTATGCACCTA
TGCTAAACTGCACCAACCAGATTCCGCGCTTGTTCGAAGTCTATCCGGGA
GGCCAGCTGGAGACGCGAAGCGTCATTTTAGTTCGTGGCTTTGGCCGTAA
CGTCGGTCTCAATGGGAACGAGATCAATCTTACCATCGGTACTATCATTC
GCGTGCAAGTTGGCGGGCAATTCATGGCGACCGGCTGCATGTTCCGTGAG
CGAAACAACACGTTTCCCAATTTTCTCGACGAGGTACGCCGCAAGCTTGA
GACGCCCACAGCCCGCAATCGACAGTTTGGTCAGATGACGCTAGTACTGG
GTGGAAACCTCGTTTTGCTCGGATGCCGATCACTCCGCTTCCGTCCCTTT
GGGAACGGAGTCTTGAATACGATGGTCATTGGGCGTGATATCAACGTGGT
GGCGGGCACGGCCACACTTATCGGACATTGCTCAGGATCATCGAGCTTGT
GGAGTACCAACTACTTTATGACAGGCGCTCTTGCTACGGTGATGGGCGGG
GTCTTGACCTTTATCGGTGGGAACAACATCGGTGCCAACTTGCTGCAGGT
GCAAGGCGGGACCATGGTGAACTTCGGTACTTTTGCGGGCGTCCTGGTCA
CTGTTGGCTACGGGTATACGACGGTTAAAGGTCTGCTTTTCCGGTCGATC
GCGGGGCAGTTCGGAACCATCGCTGGTGTCTCCGTTCAGATCGCTTTTGT
ACGAGGTAGTGCGGATGGTGTAAGATTTGTGGCAGGTGCGGGGCACACCC
ATGCGACATTCACGGGGGTGAATAACAGACAAACTGGAGTTGAGACCGGC
TACATGATATCAGGATGTCTCTTCGGCGTTGGGGGCTCAAACTATGTGGG
TGCAGGCTCATCATTTTTCCAAGCTATCCCGAAGGCTTCTTCGGCCGTCA
CAGACTCCAAGAGTGGTGTTGGTCTGACCAGCTACTACGGAGCGGGCAGC
TCTACTAACTCTTATGTACCGGGCTTTAGTGCGATTCTGGCCCGCTTCAA
TACAGGCATTGGGACTGATTTCTTCATGGGTGCTGGGTGGCACAACAACA
TCAACTGCACCCGCTTTAGCTACCAGCTGGCCAACTCATTCATTGGTCTC
GGCAATCAAGGTTATGTGGGCTTTGGAGGCGCAGCATTCATCCGCAGCTA
TTCTGCATCGGCTCGTGTGTACCAGTACAAATATCCCACGATCTACACCT
TCACGGTTGCAGGCACTGGTGTAGGATCGTCCGGAACAAAAGGCCAGAAC
TTGGTGCTGACCAAGGGTGGTATTACGCGCTATATCCACAACAAGACAAC
AAACACGGTCACTAAAATCTCCACACCTCACGTACAAAAAACGCTTGCGC
CGACCAGGGCCCCTGGAGGTCGAAGGCGAAGGACGGTTGCTCGGAAGCGA
GCTGTTCAAACCGAGGATCTCAAAAACATCCCGCCTACCATGGGGTCCTG
GCTCAAAAACATCGTCGACGCTACCGGTGGCTTGGACCCTGGCTTGCAAA
ACAAAATAGTAATGCTCCAGACCACAATCTTGGAGAGGAAGGTGAAATTG
CCTCCGCATCCGAAGCACTTCAGGGATCGAAGGTTGAAGGAGCGATCCGG
GGGCTACGCCAAGATCCTGGCGGATGGACTGGTTGACTTTGAAGGGTCCG
AGGCAGTCGAAACGCCTGGTTTGATCTCAGCGAACAACTCGGACTGCTTC
CTGTGCAACGTGGGCCCAGGCAACACTGCCGACCACATCGGTGGACCGGG
AGCGTGCGAGGTCAAGGACGTCTGTGGAGACTCCAATAACCCCGCAGAGA
TCTACGCTCGCGCTCAAGAGTCGACGACGACCAATATTCTTCCCCCTGCC
CTGGACAAGTCCTTAGGCAACGTGGACGAGGACGGGAACCCGATTTTATC
CGACACGTGGATCTTGTGGCACGAGATGGTCGTGTACTGCCATTCCACGG
ACCCAGAGACGGAAGACAGCAGCATCACGCGCGGGTGCTTGACTGAGCAG
TACATCAAGGACGTGATCAGGGGCTACATCCTGCTGGACAACGTGAAGAA
CGAGTACCAAATGGCGGTGAGCGAAAGTGGCGTCCATGCCTCGGCAGACG
CTTTCCCTGACCCGACACTAGATGACCTTAAGGTGGCTGTCAGTCCAGAG
TGGAATCCGGAGTGCCAAGGATGGACTAAGTACGACATTCGCATGGTGGC
GAACGACCCAGAGGTCGAGCAGCACATTTTGGACATCTTCGAGGGCTTCG
TGGAGGACCCTTCCGACTTGGAAACGACCATCATCGAGAATGCGGACCCA
TCCGCCGAGTTGCAGCCCTGTGCAATCAGAATCACGGAGAAGGGGGAGCA
GAGGTATCCTTCGATCAACTCCATGCCTGCTTTCAAGCCGTCTCGGAGGC
TGATGATAGGACCTGACGTGGTGATCGCCGATGGGGTGTCGATCGAGCCT
GTGAAGTTCCTGTATCCCGGCGAGACCTACGTGGTGTATTTGCAGAACTT
TCCCAAGGGCGCCACCATCGAGGTGATGCTCATGGATGGCCTGGTTCAGA
CAGGGCCCGTGGTAGCCACGCTCGATTCGTTTGCAGGGGATGGTATTGCA
GAGGTCAGCTGGACGGTCCCACGGGACATAATTGTAAACGATGGCAAGTA
CTACTTGAAAGCCCAGATCAAGAATCTCGCTGCTTTCTTCACGTATTCTC
AGGTGTTTTATTTCGATGATGGGTACAGCAATTGA
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protein sequence of rna6072

>rna6072-protein ID=rna6072-protein|Name=rna6072|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MGLMQDVFVRDPEHTRLLQEAWADPEIFRYLVDELPFFSVIKPLRALREK
KVLSPQDFVASFRCGLMVV
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mRNA from alignment at CM002467.1:504549..504881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6072 ID=rna6072|Name=rna6072|organism=Nannochloropsis gaditana|type=mRNA|length=333bp|location=Sequence derived from alignment at CM002467.1:504549..504881+ (Nannochloropsis gaditana)
ATGGGACTCATGCAAGACGTGTTCGTGAGGGACCCTGAGCACACGCGGCT
CTTGCAAGAGGCGTGGGCGGATCCTGAGATTTTCCGGTATTTGGTGGATG
AgctgcctttcttctcggTGATCAAGCCTTTGCGAGCgctgagggagaag
aaggtgctgTCTCCGCAGGATGTGAGTAGAAAAAAGCGACAGTGCACCAC
GCCAGTGCCGTTACCTTACGATGACAGGTGTTGCTCATTTGCCTACCTCC
ATGGTCATCCCCTTGGTTTGATTCGTCGTACGCATGCCTGTCAGTTTGTC
GCCTCGTTTAGGTGTGGACTCATGGTGGTGTGA
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Coding sequence (CDS) from alignment at CM002467.1:504549..504881+

>rna6072 ID=rna6072|Name=rna6072|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002467.1:504549..504881+ (Nannochloropsis gaditana)
ATGGGACTCATGCAAGACGTGTTCGTGAGGGACCCTGAGCACACGCGGCT
CTTGCAAGAGGCGTGGGCGGATCCTGAGATTTTCCGGTATTTGGTGGATG
AgctgcctttcttctcggTGATCAAGCCTTTGCGAGCgctgagggagaag
aaggtgctgTCTCCGCAGGATTTTGTCGCCTCGTTTAGGTGTGGACTCAT
GGTGGTGTGAATGGGACTCATGCAAGACGTGTTCGTGAGGGACCCTGAGC
ACACGCGGCTCTTGCAAGAGGCGTGGGCGGATCCTGAGATTTTCCGGTAT
TTGGTGGATGAgctgcctttcttctcggTGATCAAGCCTTTGCGAGCgct
gagggagaagaaggtgctgTCTCCGCAGGATTTTGTCGCCTCGTTTAGGT
GTGGACTCATGGTGGTGTGA
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Synonyms
Publications