rna6068, rna6068 (mRNA) Nannochloropsis gaditana

Overview
Namerna6068
Unique Namerna6068
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3525
Alignment locationCM002467.1:493592..493834 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100117g3.405.mrna
Orig protein idgnl|cribi|Naga_100117g3.405
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:493592..493834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100117g3gene5863Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24626.1cds6053Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6068rna6068-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6068 ID=rna6068|Name=rna6068|organism=Nannochloropsis gaditana|type=mRNA|length=3525bp
ACCTCACCATCTACGTCATTCCTTGCATTTTTTGTCATTAATACATCAGA
TTTAGGGTCGTGCTGGCGTGTTGTCATTTTTACGGAGAGAGCTGAAGTCA
TGAAGGCTTAAGATCTCCAAGCGTTCTTGTCATCCGTAAGCATGCACGTC
TACTATCATCAAACGACCGCAACCACTGGCTCACCTAACACCTCGACGAC
CTCAAGAATTACTGAGCATATTCCTTCGACATCGTCGCGCATGATGGGAG
GACAGCATCATCAGGCTGTGTCTCAAACTGCGGCGCATGGAAGTGGAGCA
GGGAGCGAATACAACGGCGCATCCCGGAAGCTTGAAGAGTTATTTGTCTA
CTGGCTCAGTCAAAAGGAGACAACTGAAATGGTGGAAAATTGCGTGACAG
CCGTACGTCAGGGGCAGGCCTTGCCGAGCGAATCGGCTCTTGAGCCACCG
CAGCTCACCTTGCGCGGTTTATCGGGCGCAGTTGCGCCACATATGTCCCT
GGCGACTAACCAGCCACCGCGGTCTCCCAAAGAGCCCGCGACAAGCTATT
CCCCACCCTCAACCGGTGCTTTTCTCCTGAAGCGGCCTTTGGCTTCGATC
AGCGCCGGCACTGTCAATGGCTTCGGTAGTGGCGCTGAAGAAAGTACACA
TTCCAGCACCTCAAGCGATGGTTCGCCTTCACAGGAAAGAGAGGAGGCTT
GGGACTCGGGTCTGAGCTCTGAGGACCGCGCGACCAAGGACTCGGACGAG
TGCAACGCCGTGTGCGAGGAGGAGCTTTCTTCCTCGGCCTCGATGGCCGT
CCCCACCTTAACACATGCTTCGACAACGTCAGCTTCTATTTCTTTGTCCT
CGTTATCTCATACGCCCACGAACTCTGCCTCCAGTGTGTCGTTTCCTACA
AGGGTCCACCCCGAGGAAAGTTCTGCTTGCGCCGCCGCTGAACAGAAATT
TCAAATAGCAACAGCGACCTCGCCAAATTCTCTACAAGTCGCTGTGTGCA
ACCCTCCACCAAAGCTTTGGTTACCTTTGGATGGGCGCGGGAGTGGTGGG
CGAGGACAAGCCTACCCGGAGGACAGTTTGTTATCGAAGAAAGAGGCCCT
CGTCGCAATGTTCGAGCGCCTGGTCCCAGACAAGGAGGGGACTTGGAGGG
GGCTAGCGGTGGAGGATTTCGGGGAATTCACGAAGAGCTACTGCCGGCTG
CCAGGCTTCTTGCAGGAGCCCCTCTTCCGTAGGGTTATGGCTTTCGAGGA
GCACCGTCCCGCGCCTCCACCAGCAGGGTCTAGGCCGTCGTCCGCCTGGA
ACCAGGTAGGAAACAAGATTATACATGGCGTGGAGGACGTGTCGTCGTGT
GGCGACCCGGACGCTTCGCCCCAGTCGATTCAGATGGCGGGCGCCGTCAT
CGGGAGCGAGGGAAGGAGCCCGTCCCCCACCGCCTCTCCCTCCGGCTCCT
CGTCCAATTTGTCTGCCGCCGGTGCCTCGGGGCGTGAGACACTCTCTCTG
GACACCCTTTTGCGTTTCTGGGCCATCGAGATGGCGCCTTTCGACACAAC
AGACAGGCTCTTCCGCCTGCTAAAGCAGCCTGACGCCACCTATATCGTGA
AGGACGACCTTTTCCCCTTCTTGCACCGTTTGCTGGAAACACATCCTGGA
CTCGAGTTTCTCCGGAGCCATCCAGATTTCCAGCAGAAATATGCTCTGAC
CGTGGCATCGCGCATTTTTTATACCTTGAATCGGGCGGGCACAGGGAAGA
TCTCGGCGAAGGAGTTGCGGCGCTCAGGGCTGCTACGGGCGATGCAGTTC
GTGGACGAGAACGAAGACATCAACAAGGAGACGTCTTTTTTCTCGTATGA
ACATTTTTATGTTCTCTATTGTCGATTTTGGGAACTTGATACAGACAGAG
ATGGGGCTTTGACGCGCGAAGACCTCTTGAAATACGGCGACCACTCATTG
AGTAATGCGATTGTGGATCGAATCTTCGAGGTCGGAGCACGGCCTTTTGA
GGATGGCCTAGGTGGAAAGCGGAGCTGCAAGGAACGGGAAAAAATGATGT
ACGAAGACTTCATATTTTTTATGCTGTCAGAGGAGGACAAGGGAAATGAG
GCGAGCCTCCGGTATTGGTTCCACTGCGTCGACGTGGACGGAGATGGACG
CTTAAGCCTTCAGGATATGCGCTACTTCTACAACATTCAGCTGCAGCGCA
TGGAGTGGCTCGGTCATGAGCTAGTCCCTTTCGAGGATGTCCTTTGTCAG
ATGCTGGACATGCTCAAGCCCACGCGCGACCTGAGTCGTTGCCGCCAGCA
ACGTGTTTTCCCTGTGGCAGTTAGTGCGGGAGAAGGCAAAGGAAGCAAAA
GCCAATTGCAAGATAAAGACGACGTGCGGGCTGTAGAAAAGACACGCGGA
AAGTCTTCAGCGCCTCTAGTGGTAAATGCGGCCGCAGCGTTCGCACAAGA
AGAGGAAGTGCGGGCGGGTGGGCTGCACATTGAGGATTTCCTCCTACCCG
ACAAAATTAAAATCGCGGGCGTCTTCTTTGACGCTCTCTTCAATTTGAAT
AAATTTCTGGCCTTTGAGCAACGTGATCCCTTCGGGGATCGACAGAAACG
CGAGGATCCTTTTGATTCGGATTGGGAGCGCTTCGCGTACCGAGACTACC
AGCAGCTGGCTATGGATGAAGAAGACAACGAGGGGGGCTCGTATGCAGAG
GAGACAGAAGGGCAACAAATCACCAACATGGATGTGGAGGATGAAGGAGA
TGACGAAGATGATGACGATGATGAGGACGAGAAACGGGCCCTTCAGGCGG
TGCCAGGCAGCTCTATGTTGGGTGAAACGTCGGAGGGCATGGAGGATGCT
GAGGGGGCGGGATCCGAGAGGAGTGTGGCGGACGGCAGTAACGTAGGTGA
AGTCGAGGGCGCGTCTGGCAAGCTTTCGCGAGAAAGCAAGCAGATGCTCA
ACGGCGTTCCTCTCCATTGAGAAGGGGTGCTGAGAAGTGCGGTCATGAAA
GGAGTGACGAGAGTTAGGTAGAGTGTTGGCTAAAAATGGATCGGTGCCTC
GGCACAGACTCGAAATCAATAGCGCGAGGCGAGAATGAAGACGGTGGAGT
AAATAGAGGACTGTGTCCGGAAGGCAGTGACCTGGACCTGATGGTGATGT
TGTCTGCATGAAGATCTAGGTAGGTTGTGAAGGAAGCACAACAGGAGCAA
GGGGAAATTAGACGCGTGCGTGTCGCAATGACGGAAACCTAGCCGGTAGA
AGGCATGCAATAACGCCATCACATGTCTTCGCGAGAAACAGGTCAAGTTC
TGGCCTGACATCTTTAGCAAGACTGTTTACAATATAGGCGTATATTTCGA
TGCTATTCAAGTGTGCCGCATCTTCTGTTTTTGCGAGCAAGGGAGATAAA
ATACCCATGAGCCCCAAAGTGGACACAGGAAAGAAAAGGTCATCACTGGC
CGCTCGCAAGGGGTGTAAGTGCTTAAATGTCTAGAGGACGAGAAAGCATC
AATAAAATTCGTGGCAGTCGGACTT
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protein sequence of rna6068

>rna6068-protein ID=rna6068-protein|Name=rna6068|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MLLGEEADTKERGRAQLAAHSRLLPKYTLLSGGQAAAMLLCEMLKRPCGQ
LRRPKSGAKGLILSDSQGVNRVKCEVKCYG
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mRNA from alignment at CM002467.1:493592..493834-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6068 ID=rna6068|Name=rna6068|organism=Nannochloropsis gaditana|type=mRNA|length=243bp|location=Sequence derived from alignment at CM002467.1:493592..493834- (Nannochloropsis gaditana)
ATGCTGCTGGGGGAGGAGGCAGATACGAAAGAGCGAGGCCGGGCTCAGCT
GGCGGCACACAGCCGCCTGCTTCCGAAGTATACTCTCCTGTCTGGAGGAC
AAGCAGCAGCTATGCTTCTCTGCGAGATGTTGAAGAGGCCTTGTGGGCAA
CTACGGCGACCAAAAAGTGGAGCGAAAGGATTGATTTTGAGCGATAGTCA
AGGAGTAAATCGTGTGAAATGTGAAGTGAAGTGCTATGGGTAA
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Coding sequence (CDS) from alignment at CM002467.1:493592..493834-

>rna6068 ID=rna6068|Name=rna6068|organism=Nannochloropsis gaditana|type=CDS|length=243bp|location=Sequence derived from alignment at CM002467.1:493592..493834- (Nannochloropsis gaditana)
ATGCTGCTGGGGGAGGAGGCAGATACGAAAGAGCGAGGCCGGGCTCAGCT
GGCGGCACACAGCCGCCTGCTTCCGAAGTATACTCTCCTGTCTGGAGGAC
AAGCAGCAGCTATGCTTCTCTGCGAGATGTTGAAGAGGCCTTGTGGGCAA
CTACGGCGACCAAAAAGTGGAGCGAAAGGATTGATTTTGAGCGATAGTCA
AGGAGTAAATCGTGTGAAATGTGAAGTGAAGTGCTATGGGTAA
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Synonyms
Publications