rna606, rna606 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna606
Unique Name	rna606
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1661
Alignment location	CM002455.1:1509688..1511645 +

Link to JBrowse

Properties


Property Name	Value
Product	light harvesting complex protein
Orig transcript id	gnl\|cribi\|Naga_100173g12.4677.mrna
Orig protein id	gnl\|cribi\|Naga_100173g12.4677
Gene	LHCP21
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1509688..1511645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LHCP21	gene582	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna606	rna606-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30071.1	cds606	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1509688..1511645+
coding sequence from alignment at CM002455.1:1509688..1511645+

mRNA sequence

>rna606 ID=rna606|Name=rna606|organism=Nannochloropsis gaditana|type=mRNA|length=1661bp
AGCAGCAATGTTCAAGGAGGGAATGACGGGGAGTAAGAACGCACGAGACA
ATACCCGGAGGCATCTTTGGGTGGAAACGGTATAAAGCGTAACGACGCGT
AACCACACGAATCGACGTACTTACACGCTTCTCCTGTATATTTTCTTAAG
GATAAATTCACCGATGAAGGCCTCGCCTGCACGGTGCCCTCGTCAGTGGA
TCGGATATAAGCGTTTATTGCTATTTTGCGTCCTGCTACCCCTTGTGAAC
CTCCCCCTCAGCGACGCGTCCGTCACCGATGCAAGCGCTTTTATGTTTCA
TATGCCAACTGCTGCATTGACTCGTCGACAACATTCTATTCGGCCACTTG
CACCTGTACCATTGTCTCCTCAAAAAGTGCGTGCCATTTTCGGCCCTAAT
CCTCTCCCCCTTGGCTATCGATTCGGACTTCTGGAACCTTCAGATCTCCC
TTCTCTGGTTCAGCTCCTCCTCGTGTGCTTCCCGCCGGACCTACCCCTTC
CCGAGGCAGATGATATTCTGCATTCCTCATCTTCAACCTCATTACCTTCC
AAGCTAAGCCGTCAGCTTCTCTATTTTGCGGCTCGGGCGACCAATGGCCT
TGCTTTTCTCCTTTCAAAACAAGAACTTCGATGGGGCTTGCTGTCGCGGC
ACGGAGAACGTCTCTCACATCCTTGTCTTGAAGGACAGTGCACCGAGAGC
CTCACTCTGTGCGTGGAGGAAGAGCCCACCAATCGCCTGGTGGCGGTGGT
GGAGCTCTGCCTCCGCCGTCCAGACGGCAACCTGATTCCCAGCATTCGCT
CGTCTTCCCTCCGGTACGATGCGGCCTGTCGCCCGTACTTATGCAACCTT
GCAGTGTCACCGTTGTATAGGGGTCAGGGGTTGGGAAAAGCGCTCGTACG
CATTGCGGAGAACGTGGTGTCCGAGTGTTGGGAAGAGGATGTAGTGTACT
TGCATTTAGACGAGACGGACGTCGCAGCGATGTCTTTGTATGGTAAGCTA
GGGTACGAAAGGGTAATAGGAGTAGATCCTACGGGATGGTATCAAGAGGT
GATGATTGAGGCGGCTAGAAGAGAGGGAAAAAGTCTGAAATACTATAAAC
GAGAAGTTGGAATTTTGAAAAAGGAAGAAGAGAGTGGTAGTGCGAGTGAA
ATAGGAATCGTGGAGGATGAGGAGGCTTGGGGCTGGGATGGGAAGAAATT
GAGGGGGAATAACTGGGAGAAATCGACGAAGGAAAGCTCAAGTAGCTCAG
GAGGACAAGGAATAGAGGGGAACTTGGATGGTTGACCACATCAAGTATTC
GAATAGGGGCGCTCATGTATGTAGTTAGTTTTGATGACTGTGGTAACGCT
ATCGACTCATGGAAAGCGCGCGAAGAAGCCTGTGCAGCAAGTCGAAGATG
GAGGATGCGAGGAGGAATAGACGCGTACAAAGGTTGATGTGTAGAACGAA
CTGTCAATAGAAAGATGTCTCAACATAAGCAAACGACGAGACAAATTCCA
GAGTTTACACCTCCAAGAAGTTCTGGGCATATCAAAGGCGGCAGAAAGAT
CGTACTTTTTATTTCCTTTAACATATATGGTCAATGAGGTATTGTTTGAT
GGACAAAAAAGCTTGTAGTCTGAAGCCGCAACATGTTCGGACAACATTTC
TTCACATAGAA

protein sequence of rna606

>rna606-protein ID=rna606-protein|Name=rna606|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MRVLSFLAIIGTAAAFVKPTLPAAGSRTRAGALRMNLAEIELEAGKTSPF
PDGFDPLGLSKDKSFKELKKWREAELKHGMSLHPPRRVAMLAVLGTAVQE
NFHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGW
DENMAGSSQIAGVKEDYICGNLGLDPLKIIENDDEEAFLSYRNKELNNGR
LAMIAAAGITVQEKFVTNGLPEFEFHRFALSDVYNFFF

mRNA from alignment at CM002455.1:1509688..1511645+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna606 ID=rna606|Name=rna606|organism=Nannochloropsis gaditana|type=mRNA|length=1958bp|location=Sequence derived from alignment at CM002455.1:1509688..1511645+ (Nannochloropsis gaditana)
ATGCGTGTactctctttccttgctATTATCGGCACTGCCGCTGCCTTCGT
CAagcccaccctccctgctgcTGGGTCTCGCACTCGTGCCGGCGCTCTCC
GGTAAGTGGTTCCGTCTGTCCCACGTTGAACATATATCTAAATTTCATGG
AATCATGCATGCAAGGAATGGTGCGCCAAAGTGGAAATGTACGCGCTTAT
TCGAAAAGAATTTATCACAATTGCTTGCATCGTACTATGCATACTTTGTC
TTTCTATCATGTGTCAAAAGGAAGCACTTGCTAGGGTTTGGACTTAGGCG
TGGTATCTTCTCCCCGCATCTTACAAGTGTCCCTCATCAAACTGAGGGTT
TGCTTTGTTCTCCCGACTGGTTTTCATAGTCCAATTCCATGACCGTTTGG
AGCTTGTCTCCTGATGTTTTAAATAGTTCTGGGTGTGCATTGCCCCCATT
TTTGCAATCCTGCTTACCTGTAATCTCTTCCTCTAACATGTGTTCCAACT
AttttctgcctccctcgccttctctcctccataAGCATGAACCTCGCCGA
GATCgagctggaggcgggcaagacctctcctttccccgatGGCTTCGATC
CTCTCGGTCTGTCCAAGGATAAGTCATTCAAGGAGCTCAAGAAGTGGCGC
GAGGCGGAGCTCAAGCACGGTAtgtccctccaccctccgcgTGACTCCCG
CATTACTCTCCCGTTCCTCTTTCTGTCTCGGGAGGATAACCCATGATCCC
ACAGCTGACCACTTTTCCGGCATCGCCTCTCAGGCCGCGTTGCCATGCTT
GCCGTCCTGGGCACGGCCGTGCAAGAGAACTTCCACCCCCTGTGGGGCTT
CaacgagaaggagatggatggTGCCATCTTTCACTTCCAGGTGCGTGGCC
TTCCTATAGACGTGACGGCGTCGGTGTGACAGACAAGGGTTTTAGAGAAG
TGATCGGAAAGCGGGAGCGCTCTGGATGTGGATGCTGGTGGCTgattctc
tctttcccctcaaaCATTCGTACCACCTGCCGTCGACCATTGTAGGAGAT
CCAAAACGTCTACCCCCTTTTCTGgaccgccctccttttcatcatCGGCA
TCATTGAGGCTCGCACCATCTCCACCGGATGGGATGAGAACATGGCCGGA
TCTGTACgtcccaacctcctcaccatctccttccctccttcccgctccat
catccctccttgcctgtCCTTTGCCCGTTGCGTGTGCAGTAGGACGCCTC
TCTTACTTCATATCCCCCTTCGCTTTGCACCCCTgaccctccacctcggc
ttGCTGGACCTTCATAAACCCGACGCGATTACGAAGTACGTCGCTCACCT
CCAACCGTTGCTTTCtgtcccctctttcccttcagtCCCAGATCGCcggc
gtgaaggaggactaCATCTGCGGGAACCTGGGCCTGGACCCCCTCAAGAT
CATCGAAaatgacgacgaggaggctttCCTGTCCTACCGCAACAAGGTAA
GAGTTACCACACCACAGGCACACACAGGCACCGaatccctttccttttcc
ccttaaCGCGGTCTAATACTCAGTCTCACCGGTTCTTGCCCTACCTCATC
TTTCAGGAGCTCAACAACGGCCGTCTGGCTATGATCGCAGCCGCTGGGAT
CACCGTCCAGGtagcctcccttcttgcctcccttcctctctttcttattc
cctctctccctccctcgctttgtccacgtccccctctgcttccctccctt
ccaccttttcCTACCTCCGCACTTCACAATGACTTTCGACCGACCCGTGG
TGCATGTCCTGATGCCCTCTCACCCGTGGATACTGGAAAACATCTCATTC
TTTCAACTCCCTCTCTTATGCCTGCAGGAGAAGTTCGTCACCAACGGCCT
CCCCGAGTTCGAGTTCCACCGATTCGCCCTCTCGGACGTCTACAACTTCT
TCTTCTAA

Coding sequence (CDS) from alignment at CM002455.1:1509688..1511645+

>rna606 ID=rna606|Name=rna606|organism=Nannochloropsis gaditana|type=CDS|length=5019bp|location=Sequence derived from alignment at CM002455.1:1509688..1511645+ (Nannochloropsis gaditana)
ATGCGTGTactctctttccttgctATTATCGGCACTGCCGCTGCCTTCGT
CAagcccaccctccctgctgcTGGGTCTCGCACTCGTGCCGGCGCTCTCC
GCATGAACCTCGCCGAGATCgagctggaggcgggcaagacctctcctttc
cccgatGGCTTCGATCCTCTCGGTCTGTCCAAGGATAAGTCATTCAAGGA
GCTCAAGAAGTGGCGCGAGGCGGAGCTCAAGCACGGTAtgtccctccacc
ctccgcGCCGCGTTGCCATGCTTGCCGTCCTGGGCACGGCCGTGCAAGAG
AACTTCCACCCCCTGTGGGGCTTCaacgagaaggagatggatggTGCCAT
CTTTCACTTCCAGGAGATCCAAAACGTCTACCCCCTTTTCTGgaccgccc
tccttttcatcatCGGCATCATTGAGGCTCGCACCATCTCCACCGGATGG
GATGAGAACATGGCCGGATCTtCCCAGATCGCcggcgtgaaggaggacta
CATCTGCGGGAACCTGGGCCTGGACCCCCTCAAGATCATCGAAaatgacg
acgaggaggctttCCTGTCCTACCGCAACAAGGAGCTCAACAACGGCCGT
CTGGCTATGATCGCAGCCGCTGGGATCACCGTCCAGGAGAAGTTCGTCAC
CAACGGCCTCCCCGAGTTCGAGTTCCACCGATTCGCCCTCTCGGACGTCT
ACAACTTCTTCTTCTAAATGCGTGTactctctttccttgctATTATCGGC
ACTGCCGCTGCCTTCGTCAagcccaccctccctgctgcTGGGTCTCGCAC
TCGTGCCGGCGCTCTCCGCATGAACCTCGCCGAGATCgagctggaggcgg
gcaagacctctcctttccccgatGGCTTCGATCCTCTCGGTCTGTCCAAG
GATAAGTCATTCAAGGAGCTCAAGAAGTGGCGCGAGGCGGAGCTCAAGCA
CGGTAtgtccctccaccctccgcGCCGCGTTGCCATGCTTGCCGTCCTGG
GCACGGCCGTGCAAGAGAACTTCCACCCCCTGTGGGGCTTCaacgagaag
gagatggatggTGCCATCTTTCACTTCCAGGAGATCCAAAACGTCTACCC
CCTTTTCTGgaccgccctccttttcatcatCGGCATCATTGAGGCTCGCA
CCATCTCCACCGGATGGGATGAGAACATGGCCGGATCTtCCCAGATCGCc
ggcgtgaaggaggactaCATCTGCGGGAACCTGGGCCTGGACCCCCTCAA
GATCATCGAAaatgacgacgaggaggctttCCTGTCCTACCGCAACAAGG
AGCTCAACAACGGCCGTCTGGCTATGATCGCAGCCGCTGGGATCACCGTC
CAGGAGAAGTTCGTCACCAACGGCCTCCCCGAGTTCGAGTTCCACCGATT
CGCCCTCTCGGACGTCTACAACTTCTTCTTCTAAATGCGTGTactctctt
tccttgctATTATCGGCACTGCCGCTGCCTTCGTCAagcccaccctccct
gctgcTGGGTCTCGCACTCGTGCCGGCGCTCTCCGCATGAACCTCGCCGA
GATCgagctggaggcgggcaagacctctcctttccccgatGGCTTCGATC
CTCTCGGTCTGTCCAAGGATAAGTCATTCAAGGAGCTCAAGAAGTGGCGC
GAGGCGGAGCTCAAGCACGGTAtgtccctccaccctccgcGCCGCGTTGC
CATGCTTGCCGTCCTGGGCACGGCCGTGCAAGAGAACTTCCACCCCCTGT
GGGGCTTCaacgagaaggagatggatggTGCCATCTTTCACTTCCAGGAG
ATCCAAAACGTCTACCCCCTTTTCTGgaccgccctccttttcatcatCGG
CATCATTGAGGCTCGCACCATCTCCACCGGATGGGATGAGAACATGGCCG
GATCTtCCCAGATCGCcggcgtgaaggaggactaCATCTGCGGGAACCTG
GGCCTGGACCCCCTCAAGATCATCGAAaatgacgacgaggaggctttCCT
GTCCTACCGCAACAAGGAGCTCAACAACGGCCGTCTGGCTATGATCGCAG
CCGCTGGGATCACCGTCCAGGAGAAGTTCGTCACCAACGGCCTCCCCGAG
TTCGAGTTCCACCGATTCGCCCTCTCGGACGTCTACAACTTCTTCTTCTA
AATGCGTGTactctctttccttgctATTATCGGCACTGCCGCTGCCTTCG
TCAagcccaccctccctgctgcTGGGTCTCGCACTCGTGCCGGCGCTCTC
CGCATGAACCTCGCCGAGATCgagctggaggcgggcaagacctctccttt
ccccgatGGCTTCGATCCTCTCGGTCTGTCCAAGGATAAGTCATTCAAGG
AGCTCAAGAAGTGGCGCGAGGCGGAGCTCAAGCACGGTAtgtccctccac
cctccgcGCCGCGTTGCCATGCTTGCCGTCCTGGGCACGGCCGTGCAAGA
GAACTTCCACCCCCTGTGGGGCTTCaacgagaaggagatggatggTGCCA
TCTTTCACTTCCAGGAGATCCAAAACGTCTACCCCCTTTTCTGgaccgcc
ctccttttcatcatCGGCATCATTGAGGCTCGCACCATCTCCACCGGATG
GGATGAGAACATGGCCGGATCTtCCCAGATCGCcggcgtgaaggaggact
aCATCTGCGGGAACCTGGGCCTGGACCCCCTCAAGATCATCGAAaatgac
gacgaggaggctttCCTGTCCTACCGCAACAAGGAGCTCAACAACGGCCG
TCTGGCTATGATCGCAGCCGCTGGGATCACCGTCCAGGAGAAGTTCGTCA
CCAACGGCCTCCCCGAGTTCGAGTTCCACCGATTCGCCCTCTCGGACGTC
TACAACTTCTTCTTCTAAATGCGTGTactctctttccttgctATTATCGG
CACTGCCGCTGCCTTCGTCAagcccaccctccctgctgcTGGGTCTCGCA
CTCGTGCCGGCGCTCTCCGCATGAACCTCGCCGAGATCgagctggaggcg
ggcaagacctctcctttccccgatGGCTTCGATCCTCTCGGTCTGTCCAA
GGATAAGTCATTCAAGGAGCTCAAGAAGTGGCGCGAGGCGGAGCTCAAGC
ACGGTAtgtccctccaccctccgcGCCGCGTTGCCATGCTTGCCGTCCTG
GGCACGGCCGTGCAAGAGAACTTCCACCCCCTGTGGGGCTTCaacgagaa
ggagatggatggTGCCATCTTTCACTTCCAGGAGATCCAAAACGTCTACC
CCCTTTTCTGgaccgccctccttttcatcatCGGCATCATTGAGGCTCGC
ACCATCTCCACCGGATGGGATGAGAACATGGCCGGATCTtCCCAGATCGC
cggcgtgaaggaggactaCATCTGCGGGAACCTGGGCCTGGACCCCCTCA
AGATCATCGAAaatgacgacgaggaggctttCCTGTCCTACCGCAACAAG
GAGCTCAACAACGGCCGTCTGGCTATGATCGCAGCCGCTGGGATCACCGT
CCAGGAGAAGTTCGTCACCAACGGCCTCCCCGAGTTCGAGTTCCACCGAT
TCGCCCTCTCGGACGTCTACAACTTCTTCTTCTAAATGCGTGTactctct
ttccttgctATTATCGGCACTGCCGCTGCCTTCGTCAagcccaccctccc
tgctgcTGGGTCTCGCACTCGTGCCGGCGCTCTCCGCATGAACCTCGCCG
AGATCgagctggaggcgggcaagacctctcctttccccgatGGCTTCGAT
CCTCTCGGTCTGTCCAAGGATAAGTCATTCAAGGAGCTCAAGAAGTGGCG
CGAGGCGGAGCTCAAGCACGGTAtgtccctccaccctccgcGCCGCGTTG
CCATGCTTGCCGTCCTGGGCACGGCCGTGCAAGAGAACTTCCACCCCCTG
TGGGGCTTCaacgagaaggagatggatggTGCCATCTTTCACTTCCAGGA
GATCCAAAACGTCTACCCCCTTTTCTGgaccgccctccttttcatcatCG
GCATCATTGAGGCTCGCACCATCTCCACCGGATGGGATGAGAACATGGCC
GGATCTtCCCAGATCGCcggcgtgaaggaggactaCATCTGCGGGAACCT
GGGCCTGGACCCCCTCAAGATCATCGAAaatgacgacgaggaggctttCC
TGTCCTACCGCAACAAGGAGCTCAACAACGGCCGTCTGGCTATGATCGCA
GCCGCTGGGATCACCGTCCAGGAGAAGTTCGTCACCAACGGCCTCCCCGA
GTTCGAGTTCCACCGATTCGCCCTCTCGGACGTCTACAACTTCTTCTTCT
AAATGCGTGTactctctttccttgctATTATCGGCACTGCCGCTGCCTTC
GTCAagcccaccctccctgctgcTGGGTCTCGCACTCGTGCCGGCGCTCT
CCGCATGAACCTCGCCGAGATCgagctggaggcgggcaagacctctcctt
tccccgatGGCTTCGATCCTCTCGGTCTGTCCAAGGATAAGTCATTCAAG
GAGCTCAAGAAGTGGCGCGAGGCGGAGCTCAAGCACGGTAtgtccctcca
ccctccgcGCCGCGTTGCCATGCTTGCCGTCCTGGGCACGGCCGTGCAAG
AGAACTTCCACCCCCTGTGGGGCTTCaacgagaaggagatggatggTGCC
ATCTTTCACTTCCAGGAGATCCAAAACGTCTACCCCCTTTTCTGgaccgc
cctccttttcatcatCGGCATCATTGAGGCTCGCACCATCTCCACCGGAT
GGGATGAGAACATGGCCGGATCTtCCCAGATCGCcggcgtgaaggaggac
taCATCTGCGGGAACCTGGGCCTGGACCCCCTCAAGATCATCGAAaatga
cgacgaggaggctttCCTGTCCTACCGCAACAAGGAGCTCAACAACGGCC
GTCTGGCTATGATCGCAGCCGCTGGGATCACCGTCCAGGAGAAGTTCGTC
ACCAACGGCCTCCCCGAGTTCGAGTTCCACCGATTCGCCCTCTCGGACGT
CTACAACTTCTTCTTCTAA

Synonyms

Publications