rna6054, rna6054 (mRNA) Nannochloropsis gaditana

Overview
Namerna6054
Unique Namerna6054
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1377
Alignment locationCM002467.1:452663..453207 -

Link to JBrowse

Properties
Property NameValue
Productretrotransposon unclassified
Orig transcript idgnl|cribi|Naga_101753g1.1288.mrna
Orig protein idgnl|cribi|Naga_101753g1.1288
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:452663..453207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101753g1gene5848Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6054rna6054-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24634.1cds6039Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6054 ID=rna6054|Name=rna6054|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGAAAAACGGTACATGGGAATTAACCCCTTTACCGAAGGGAGAACGATG
CATCTCAAGTGGCTGGGTGGAAACTGATAAGCGAGATCAGAATGGTGTTA
TTGTGAGGAGAAAGGCAAGATTTATTGCCAAAGGTTATAGTCAAGAATTT
GGCTATGACTACCTCCACACTTATGCACCTGTTGCATCGATAACCACGAT
TCGTTTGGTATTAGCCCTAGCATGCATATTGGATCTTGAGCTGGATAACA
TGGATGTTGAACCAGCTTACCTTCAATCAGACCTTGAGGAAAAGGTATAT
GTCAAACAACCACCTGGATATGAGCAATATGGATCAAATGGAGAGGAGCT
AGTTTGTCGATTACGTAAGTCGCTATACGGACTTAAACAATCTGGACGAA
ACTGGCATAAGAAGATTGATGGATGGTTCCGAGGATATGGTTTCCATCCT
TCTTCTGCTGATCCATGCTTATACGTGAAGTTTGGATCTAGTGGTGAAAT
ATTGGTTATCGTCTTATATGTGGACGATTTAATTATCACTAGTAACTCCA
GGGAAATGGTAGGTAAATTCAAGCACGCTATTTCGAGGGAATTTAGCATG
AAAGACTTGAAGGAGCTTGATTGGATACTTGGTATGGCAATCAAACGTGA
TCGAGGAAAGAGAGTTATGGAAATCTCTCAAACAGCCTATATCGATATGA
TGCTGGCGAAATTTAGAATGGCTGACTGCAAACCGGTCCTAACGCCCATG
GAAGGGACTCTGACAAAAATGGATGGCAAGGACGTCAAACCAGATAATGA
ATACATGAAGCTAGTGGGTAGCTTATTGTATGCAGCACTGGTCACGCGTC
CAGACATCGCATTTGCGGTGCAGTCGTTGGGGAAACACTTGCAAGGATCT
AATGAGGAGCATTGGATCGCTGCAAAGCGTGTATTGAGATACCTGAAGGG
TACTCGTGAGGTTGGACTCAAATACACAGGTAATTCTACGGGATCGTTTA
CCCTGGTGGGATACGCGGACGCGGATTACGCTGGCGATAAAGATAACAGA
CGTTCAACGTCTGGTTATGCTTTTACATTGAGTCATGGAGAAATTGTCAA
TACGATTGATTGGCGAGCCAAGCAACAAGAGGTGGTGGCCCTGTCGTCTG
CTGAATCGGAGCTAATATCTGCTTGTTCAGCGACACAAAGTGCACTTTAT
ATTCGTCAACTACTTATGGACCTCGGATTAAAGCAAGATGAGCCTACTCT
GATTATGGAAGATAATCAAGCTTGCATTGCGATGGGGAATAATCCGATTA
CGCATAAGAGGACGAAGCACATAGATGTACGGAAAACAACAGGACTGGCG
TCGACCAGTGTCTTTGGTTGTCTTTGA
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protein sequence of rna6054

>rna6054-protein ID=rna6054-protein|Name=rna6054|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
METNWAGMSVYLATPTMAPAKAGALVTDGEMEAVEAVMDMVGAKEPLELV
HTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQ
DMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGRIGKEF
LG
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mRNA from alignment at CM002467.1:452663..453207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6054 ID=rna6054|Name=rna6054|organism=Nannochloropsis gaditana|type=mRNA|length=545bp|location=Sequence derived from alignment at CM002467.1:452663..453207- (Nannochloropsis gaditana)
ATGGAAACAAATTGGGCCGGTATGAGCGTGTACCTGGCAACCCCTACAAT
GGCCCCGGCAAAGGCGGGCGCATTAGTTACGGACGGGGAAATGGAGGCCG
TGGAGGCCGTAATGGACATGGTCGGGGCAAAGGAGCCTCTCGAACTAGTC
CATACAGATGTACTTGGACCAGTTGAAGTAGAATCACTTGGAGGCGCAAG
ATACGCGATAGGATTTACGGACGATTACACCCGATGGAGGGTAGTGTATC
CGATGAAACATAAGTCGGAATCACTTGATTGTCTGAAGCGATATATACAG
GATATGAATATATCATTTCGTGATCACAAAGTGAATACTTTGCGCGGATT
AAGATCGGACAATGGAGGTGAATACACTGGCATAGATTTCAAGAATTTCT
GCAAGAATCATGGGATTAGACAGGATTTTGGTATGCCATATGGGCTACAA
GATAATGGACTTGCTGAAAAATCATGGCACATATTATGCAATATGGCACG
GGCTCTTCGTATACAGGCCGGATTGGGAAAGAGTTTCTGGGCTGA
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Coding sequence (CDS) from alignment at CM002467.1:452663..453207-

>rna6054 ID=rna6054|Name=rna6054|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002467.1:452663..453207- (Nannochloropsis gaditana)
GCCGGATTGGGAAAGAGTTTCTGGGCTGAATGGAAACAAATTGGGCCGGT
ATGAGCGTGTACCTGGCAACCCCTACAATGGCCCCGGCAAAGGCGGGCGC
ATTAGTTACGGACGGGGAAATGGAGGCCGTGGAGGCCGTAATGGACATGG
TCGGGGCAAAGGAGCCTCTCGAACTAGTCCATACAGATGTACTTGGACCA
GTTGAAGTAGAATCACTTGGAGGCGCAAGATACGCGATAGGATTTACGGA
CGATTACACCCGATGGAGGGTAGTGTATCCGATGAAACATAAGTCGGAAT
CACTTGATTGTCTGAAGCGATATATACAGGATATGAATATATCATTTCGT
GATCACAAAGTGAATACTTTGCGCGGATTAAGATCGGACAATGGAGGTGA
ATACACTGGCATAGATTTCAAGAATTTCTGCAAGAATCATGGGATTAGAC
AGGATTTTGGCCGGATTGGGAAAGAGTTTCTGGGCTGAATGGAAACAAAT
TGGGCCGGTATGAGCGTGTACCTGGCAACCCCTACAATGGCCCCGGCAAA
GGCGGGCGCATTAGTTACGGACGGGGAAATGGAGGCCGTGGAGGCCGTAA
TGGACATGGTCGGGGCAAAGGAGCCTCTCGAACTAGTCCATACAGATGTA
CTTGGACCAGTTGAAGTAGAATCACTTGGAGGCGCAAGATACGCGATAGG
ATTTACGGACGATTACACCCGATGGAGGGTAGTGTATCCGATGAAACATA
AGTCGGAATCACTTGATTGTCTGAAGCGATATATACAGGATATGAATATA
TCATTTCGTGATCACAAAGTGAATACTTTGCGCGGATTAAGATCGGACAA
TGGAGGTGAATACACTGGCATAGATTTCAAGAATTTCTGCAAGAATCATG
GGATTAGACAGGATTTTG
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Synonyms
Publications