rna605, rna605 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna605
Unique Name	rna605
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2434
Alignment location	CM002455.1:1506944..1508796 +

Link to JBrowse

Properties


Property Name	Value
Product	gcn5-related n-acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100173g11.4673.mrna
Orig protein id	gnl\|cribi\|Naga_100173g11.4673
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1506944..1508796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100173g11	gene581	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna605	rna605-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30067.1	cds605	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1506944..1508796+
coding sequence from alignment at CM002455.1:1506944..1508796+

mRNA sequence

>rna605 ID=rna605|Name=rna605|organism=Nannochloropsis gaditana|type=mRNA|length=2434bp
TTTATTCCCTCCCTCTAACTCTATTGTTCCCTTCTTGCAAACTGATACAC
CTACCATCAATAGGCCTGTGTGCGACCTGGGAGCCTTTCGGATGGATTTG
GACCTAGCCCAGACGGAAGATGCGCATCCGCTCTCCCCTTCCAGCCCAGC
CGCCGGGTCTGATGAAACGAAAGAGACGAGTTTGGGAAGTCAAGTGAGCA
GTACGAGCCTGGAGGACACGGAAGATGTTGGAAATGAAAAACAAGAAGGA
GAAAAAGAAAAGGATAAAGAAGAAGAAGAAGTGGAGAAGGAGGACGTGGA
AGGCGGGAGCAAAAGGGAAAAGCGGGAGGATATTTTAGCATCATCGACCG
GCCCTGCAGGTCCAGATACGGTCGAGACATCTCATGCCTCCAAAGACACC
GTTCAGAAGCAGAAGAACAAGAAGAAAAAAGGGGGCAAAAGTAGAAAAAA
GAGGGAGGCCCAGCGGCGCTACGGCCCGCCCCATTTGGACAGAGAAACGA
TCAAACGCGCCAAGGTGTCAATGCGGATCATCGCGTTTTTTTACCATCTT
TCTCTCTCTGTGCTAGTAGCGACCTGGACCGAGCTTCTCCTTAAAGGCTT
TGATAACAACTTTTCCAAGGCAGCAGCCTTTCTAGGGACCTGCCAAGGGG
TGGAGCGCGGGATTCAATTCCTTACCGCCGCTTCTTTGGGAAACCTAAGC
GACTGCGTGGGCCGTCGACCCGTCCTTTTTGCCTCCCTCATCCTCAATAT
CATAAGCACGCTCTGTGTCATTGTGAAGCCGGGTCCCATGACTGTTCTGG
CCTACTTCATTATCAGCGGTCTCAGCAATTGTATCCTAGCCATGCTCAAC
GCTATCGTTGGGGACCTTGCGGCCGGTCGCGAGGAGCTTGAGGGGGGTCT
CACGCAGCAGTATGGACGGCTGGGCATGGCCATCGGTCTTGCCATGATGG
TAGGACCCATGTTGGGCCCCTCTATACAACAGTTCAACGTAGTCTACCCC
CTCTACATCTCCATCACTTTGGTCATTATCTGCGTCCTCATCTGCCTCTC
CATGGCTGAGTCCCTCCCACCGCAAAACCGACACATAAAATTGGAGCACA
GCAACCCACTGTGGGGCTTGAAGAAGGCCATGAGATATCGGCCCTTCCTC
CTCTTTGCCCTCCCCTTCTTCCTCTCCCAGCTCTCCGAAAGCGTTTACGC
CTTCATCGTCATTTACACGAAACAGCGGCTGGGCTGGTCTTACGTCTCCG
TAGGCCTCTACATCTCCCTATTAGCCCTCACTATCGCGATCCTTCAAGGC
AATCTACGCCACATTGTGCCCCGCTTTGTCTCCGGTAAGTCCCTTCCCCC
TTCGTGGCCCTCCCTTCCTCCACTGATACCCAGGCTTAATATGCGTCTTC
CTACATGCCTCCCTCTTTATACCTCTCTCTCTTAGACAAAGGCTGTGTCC
TCATCGGCCTCTGTATGCACGGTGTCAGTATGGCCATCATCGGGAGTGCC
TTCGCGTCCTGGATGATGTTTGTCATGATGCTCCCACGCCTGCTCGCCGG
CCTAAAGCTACCCGGAATCTTAGCTTTCATGACCCAGGGCGTGGTTCACG
GAGACCAAGGGATCGTGCAAGGATCCATTATGAGCCTGCGCGTCCTTGCC
CGGGCGATCGGTACGCCTGTATTCGGCGTCGTCTTCGGTCATTTCTTCGA
CAAGCACCGGATCGCACGGGTAGGCATTATCTTATTGGCATGCCTGCATT
TGCCCTTTGGCGGTGATTTCTTGTTTGTTTCGATGACATCTTTTTTAAAG
TCACCTCCTCCGTAGCGTGTGGGCTTCTGTAAAGTGGTTAAATTTGGGAA
GGGAGGGATAACGACAAGAATAAAATTGCAAAGATTGGGAAGGTGGGAGA
CGGAAGAGCAGCAGCTCATTTGTCAAGTGTGTCATTAATAACGTCATACC
TCTATCCCATTTATTTCCATCTCAATGCCTTTCTCAGCAAGGTGATTGGA
TTTCAGGTATAACTTTTTATCTCGCCGGTGCCTTTGACGTTTTGTCTGCT
GCTGCGGCGATATGGGTGTTCTATGTGCTGCTTAAGGATGGAAAAGATGA
GGACACAAGGGCAAAGTCCGGGCAAAGGTCCATCGAATTGATGGAGGAAG
GGAGAGAGGAGGCTACGGCATAGGATTGCAATATGATTATTCAGCATGCT
ACAGGCTGAGGCAAATAAAAATCAACATGCGCGTCATGTGCCGTTTCTCG
TGCCGGTAGCGGTCGATTTCCACCTCCATCGTCGCTTCCTTATAGTCACG
GGCCTGGAACTCGACTATACAGTAGGCACAAGCATTTGGCACAGAGGAAA
CAAAATAAAGCTTGGTGATGGGAGAGGGAGGTGAAAAAATATATCATAAT
TATTCAATGAAAATATATATGGATACCGAAGTCA

protein sequence of rna605

>rna605-protein ID=rna605-protein|Name=rna605|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MKASPARCPRQWIGYKRLLLFCVLLPLVNLPLSDASVTDASAFMFHMPTA
ALTRRQHSIRPLAPVPLSPQKVRAIFGPNPLPLGYRFGLLEPSDLPSLVQ
LLLVCFPPDLPLPEADDILHSSSSTSLPSKLSRQLLYFAARATNGLAFLL
SKQELRWGLLSRHGERLSHPCLEGQCTESLTLCVEEEPTNRLVAVVELCL
RRPDGNLIPSIRSSSLRYDAACRPYLCNLAVSPLYRGQGLGKALVRIAEN
VVSECWEEDVVYLHLDETDVAAMSLYGKLGYERVIGVDPTGWYQEVMIEA
ARREGKSLKYYKREVGILKKEEESGSASEIGIVEDEEAWGWDGKKLRGNN
WEKSTKESSSSSGGQGIEGNLDG

mRNA from alignment at CM002455.1:1506944..1508796+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna605 ID=rna605|Name=rna605|organism=Nannochloropsis gaditana|type=mRNA|length=1853bp|location=Sequence derived from alignment at CM002455.1:1506944..1508796+ (Nannochloropsis gaditana)
AGCAGCAATGttcaaggagggaatgacgGGGAGTAAGAACGCACGAGACA
ATACCCGGAGGCATCTTTGGGTGGAAACGGTATAAAGCGTAACGACGCGT
AACCACACGAATCGACGTACTTACACGCTTCTCCTGTATATTTTCTTAAG
GATAAATTCACCGATGAAGGCCTCGCCTGCACGGTGCCCTCGTCAGTGGA
TCGGATATAAGCGTTTATTGCTATTTTGCGTCCTGCTACCCCTTGTGAAC
CTCCCCCTCAGCGACGCGTCCGTCACCGATGCAAGCGCTTTTATGTTTCA
TATGCCAACTGCTGCATTGACTCGTCGACAACATTCTATTCGGCCACTTG
CACCTGTACCATTGTCTCCTCAAAAAGGTACTTAAATTTTCGTTCCACCA
CGAATTTTGCGTATCtgctccaacctccccccatctTAATCTAGCCTCTC
TCGATTGTCGCTTTCTGAATAATAATTCCAAGAACGATTGTTATAATCAA
CCTTTTTGGCTAAAACTGATACAGTCTCCCACTTCTTACCTTTTGGCATC
GTCACGGCATTGATCGAAGTGCGTGCCATTTTCGGCCCtaatcctctccc
ccttggcTATCGATTCGGACTTCTGGAACCTTCAGATCTCCCTTCTCTgg
ttcagctcctcctcgtgtgCTTCCCGCCGGACCTACCCCTTCCCGAGGCA
GATGATATTCTGCATTCCTCATCTTCAACCTCATTACCTTCCAAGCTAAG
CCGTCAGCTTCTCTATTTTGCGGCTCGGGCGACCAATGGCCTtgcttttc
tcctttcaaAACAAGAACTTCGATGGGGCTTGCTGTCGCGGCACGGAGAA
CGTCTCTCACATCCTTGTCTTGAAGGACAGTGCACCGAGAGCCTCACTCT
gtgcgtggaggaagagcccaCCAATCgcctggtggcggtggtggagctCT
GCCTCCGCCGTCCAGACGGCAACCTGATTCCCAGCATTcgctcgtcttcc
ctccggTACGATGCGGCCTGTCGCCCGTACTTATGCAACCTTGCAGTGTC
ACCGTTGTATAGGGGTCAGGGGTTGGGAAAAGCGCTCGTACGCATTGCGG
AGAACGTGGTGTCCGAGTGTTGGGAAGAGGATGTAGTGTACTTGCATTTA
GACGAGACGGACGTCGCAGCGATGTCTTTGTATGGTAAGCTAGGGTACGA
AAGGGTAATAGGAGTAGATCCTACGGGATGGTATCAAGAGGTGATGATTG
AGGCGGctagaagagagggaaaaagtcTGAAATACTATAAACGAGAAGTT
GGaattttgaaaaaggaagaagagagtgGTAGTGCGAGTGAAATAGGAAt
cgtggaggatgaggaggctTGGGGCTGGGATGGGAAGAAATTGAGGGGGA
ATAACTGGGAGAAATCGACGAAGGAAAGCTCAAGTAGCtcaggaggacaa
ggaataGAGGGGAACTTGGATGGTTGACCACATCAAGTATTCGAATAGGG
GCGCTCATGTATGTAGTTAGTTTTGATGACTGTGGTAACGCTATCGACTC
ATGGAAAGCGCGCGAAGAAGCCTGTGCAGCAAGTCGAAGATGGAGGATGC
GAGGAGGAATAGACGCGTACAAAGGTTGATGTGTAGAACGAACTGTCAAT
AGAAAGATGTCTCAACATAAGCAAACGACGAGACAAATTCCAGAGTTTAC
ACCTCCAAGAAGTTCTGGGCATATCAAAGGCGGCAGAAAGATCGTACTTT
TTATTTCCTTTAACATATATGGTCAATGAGGTATTGTTTGATGGACAAAA
AAGCTTGTAGTCTGAAGCCGCAACATGTTCGGACAACATTTCTTCACATA
GAA

Coding sequence (CDS) from alignment at CM002455.1:1506944..1508796+

>rna605 ID=rna605|Name=rna605|organism=Nannochloropsis gaditana|type=CDS|length=2244bp|location=Sequence derived from alignment at CM002455.1:1506944..1508796+ (Nannochloropsis gaditana)
ATGAAGGCCTCGCCTGCACGGTGCCCTCGTCAGTGGATCGGATATAAGCG
TTTATTGCTATTTTGCGTCCTGCTACCCCTTGTGAACCTCCCCCTCAGCG
ACGCGTCCGTCACCGATGCAAGCGCTTTTATGTTTCATATGCCAACTGCT
GCATTGACTCGTCGACAACATTCTATTCGGCCACTTGCACCTGTACCATT
GTCTCCTCAAAAAGTGCGTGCCATTTTCGGCCCtaatcctctcccccttg
gcTATCGATTCGGACTTCTGGAACCTTCAGATCTCCCTTCTCTggttcag
ctcctcctcgtgtgCTTCCCGCCGGACCTACCCCTTCCCGAGGCAGATGA
TATTCTGCATTCCTCATCTTCAACCTCATTACCTTCCAAGCTAAGCCGTC
AGCTTCTCTATTTTGCGGCTCGGGCGACCAATGGCCTtgcttttctcctt
tcaaAACAAGAACTTCGATGGGGCTTGCTGTCGCGGCACGGAGAACGTCT
CTCACATCCTTGTCTTGAAGGACAGTGCACCGAGAGCCTCACTCTgtgcg
tggaggaagagcccaCCAATCgcctggtggcggtggtggagctCTGCCTC
CGCCGTCCAGACGGCAACCTGATTCCCAGCATTcgctcgtcttccctccg
gTACGATGCGGCCTGTCGCCCGTACTTATGCAACCTTGCAGTGTCACCGT
TGTATAGGGGTCAGGGGTTGGGAAAAGCGCTCGTACGCATTGCGGAGAAC
GTGGTGTCCGAGTGTTGGGAAGAGGATGTAGTGTACTTGCATTTAGACGA
GACGGACGTCGCAGCGATGTCTTTGTATGGTAAGCTAGGGTACGAAAGGG
TAATAGGAGTAGATCCTACGGGATGGTATCAAGAGGTGATGATTGAGGCG
GctagaagagagggaaaaagtcTGAAATACTATAAACGAGAAGTTGGaat
tttgaaaaaggaagaagagagtgGTAGTGCGAGTGAAATAGGAAtcgtgg
aggatgaggaggctTGGGGCTGGGATGGGAAGAAATTGAGGGGGAATAAC
TGGGAGAAATCGACGAAGGAAAGCTCAAGTAGCtcaggaggacaaggaat
aGAGGGGAACTTGGATGGTTGAATGAAGGCCTCGCCTGCACGGTGCCCTC
GTCAGTGGATCGGATATAAGCGTTTATTGCTATTTTGCGTCCTGCTACCC
CTTGTGAACCTCCCCCTCAGCGACGCGTCCGTCACCGATGCAAGCGCTTT
TATGTTTCATATGCCAACTGCTGCATTGACTCGTCGACAACATTCTATTC
GGCCACTTGCACCTGTACCATTGTCTCCTCAAAAAGTGCGTGCCATTTTC
GGCCCtaatcctctcccccttggcTATCGATTCGGACTTCTGGAACCTTC
AGATCTCCCTTCTCTggttcagctcctcctcgtgtgCTTCCCGCCGGACC
TACCCCTTCCCGAGGCAGATGATATTCTGCATTCCTCATCTTCAACCTCA
TTACCTTCCAAGCTAAGCCGTCAGCTTCTCTATTTTGCGGCTCGGGCGAC
CAATGGCCTtgcttttctcctttcaaAACAAGAACTTCGATGGGGCTTGC
TGTCGCGGCACGGAGAACGTCTCTCACATCCTTGTCTTGAAGGACAGTGC
ACCGAGAGCCTCACTCTgtgcgtggaggaagagcccaCCAATCgcctggt
ggcggtggtggagctCTGCCTCCGCCGTCCAGACGGCAACCTGATTCCCA
GCATTcgctcgtcttccctccggTACGATGCGGCCTGTCGCCCGTACTTA
TGCAACCTTGCAGTGTCACCGTTGTATAGGGGTCAGGGGTTGGGAAAAGC
GCTCGTACGCATTGCGGAGAACGTGGTGTCCGAGTGTTGGGAAGAGGATG
TAGTGTACTTGCATTTAGACGAGACGGACGTCGCAGCGATGTCTTTGTAT
GGTAAGCTAGGGTACGAAAGGGTAATAGGAGTAGATCCTACGGGATGGTA
TCAAGAGGTGATGATTGAGGCGGctagaagagagggaaaaagtcTGAAAT
ACTATAAACGAGAAGTTGGaattttgaaaaaggaagaagagagtgGTAGT
GCGAGTGAAATAGGAAtcgtggaggatgaggaggctTGGGGCTGGGATGG
GAAGAAATTGAGGGGGAATAACTGGGAGAAATCGACGAAGGAAAGCTCAA
GTAGCtcaggaggacaaggaataGAGGGGAACTTGGATGGTTGA

Synonyms

Publications