rna6044, rna6044 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6044
Unique Name	rna6044
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	228
Alignment location	CM002467.1:435243..437366 +

Link to JBrowse

Properties


Property Name	Value
Product	calcium calmodulin-dependent protein kinase id
Orig transcript id	gnl\|cribi\|Naga_100055g10.7331.mrna
Orig protein id	gnl\|cribi\|Naga_100055g10.7331
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:435243..437366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g10	gene5839	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6044	rna6044-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24647.1	cds6029	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:435243..437366+
coding sequence from alignment at CM002467.1:435243..437366+

mRNA sequence

>rna6044 ID=rna6044|Name=rna6044|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGGCCCTTGGCGCCTCTATGCCTCAATCGTTGTATTTGCAGAGAGCACC
CTTTTCCGATACTACTCACCGGAAGCTCGGGAGCAGTCAAGTCTGCGGCG
CAGGAGACATGCCGTCTTATGTCTGTATTGGTCCCACGGCCCAGGACTTG
TCTAGTTGCACACAGCATTGCGATCGGTCTGTCATGGTCTTCGCCGTGAT
GAGTTATTTATTACAGCAACGCATGTGA

protein sequence of rna6044

>rna6044-protein ID=rna6044-protein|Name=rna6044|organism=Nannochloropsis gaditana|type=polypeptide|length=707bp
MFAPPLHVTYKVYGKSAESHPDLDDRSLQVAMEDRLAQHRLQRQRRRRRL
RGTLEKSRGRSEEVGVEARACSGTGLNLEDQAYIFSPAREGWLIKRGSGG
LRMWRRRWVGLANRKLWYANGPAGPGGGGGNCVAGSPEKGSIGCMELTQW
SQVEEVASADGLVFRVVFGSPEDTEADNRTGGQAETHSVSPEAESRPFAA
AGRPPSFLDPVEELASNRREDSSTTEWPGQPSHPGLLEALALDSEGSGSV
SRQGHVSQGGWWFRAESLQEKLVWMAKIRESISLAAWWSGLRFGPSLGEG
GFSQVLEMQDTRTGERLAVKVMQARRRMERDQALAETDILALVGRRVRHP
HLMAPRRVYVEGDRVWIMFPLCTGGDLFQRLLRKGRGPEGEAASIMLRLL
SAVQALHQHGILHLDIKPENVLFAREDDPSEILLTDFGLSRRIHRAERQG
ARDQQPAGASRVGSNASDSSDDSEEEDESAVLGQDRDYFSRLRYNMAFDE
RVNGTVGYMAPEVVLHKRYTPAADVWCLGVVLHILLVGYAPFQDARQVRG
STERLHSSHQDALERSVRGEFVMDELDWARVSPAATDLTRRMLTLDESRR
ISVAEALRHAWLQEALGGIEKVAVRETRWDTVSSLACAIMQKPSTPSDPQ
RKHARSLDRTSQQSSSSFRAMFNEVITRGSSFLSSITSTKTSPPTSSSSS
SSSSSSS

mRNA from alignment at CM002467.1:435243..437366+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6044 ID=rna6044|Name=rna6044|organism=Nannochloropsis gaditana|type=mRNA|length=2124bp|location=Sequence derived from alignment at CM002467.1:435243..437366+ (Nannochloropsis gaditana)
ATGTTTGCCCCGCCACTGCATGTGACGTACAAGGTGTACGGGAAAAGCGC
AGAGTCCCACCCGGATCTCGACGACCGGAGCTTGCAGGTTGCCATGGAAG
ACCGTCTGGCGCAGCATCGGTTACAACGACAGCGACGCCGACGTCGACTG
CGTGGTACGCTTGAGAAATCGAGGGGACGGAGTGAGGAAGTCGGCGTAGA
AGCGAGAGCGTGTAGCGGAACAGGTCTCAATCTCGAGGACCAAGCATATA
TCTTTTCCCCGGCTCGGGAAGGTTGGCTGATAAAGCGAGGCTCGGGCGGG
TTGCGGATGTGGCGTCGACGCTGGGTGGGGCTGGCCAATAGGAAGCTCTG
GTATGCCAATGGACCTGCTGGTcccgggggtgggggcgggaacTGTGTCG
CAGGGAGTCCTGAGAAGGGATCGATTGGGTGCATGGAACTCACGCAGTGG
AGCCAAGTGGAAGAGGTTGCTAGCGCCGACGGCCTGGTCTTTCGCGTTGT
TTTTGGCAGCCCAGAAGACACAGAAGCCGATAATAGGACGGGAGGTCAGG
CGGAGACGCACAGTGTCAGCCCTGAAGCCGAGAGCAGGcctttcgccgcc
gccggccgcccgccttctttcctggacccggtggaggagctcgccaGCAA
CCGCCGTGAAGACAGTAGTACTACTGAGTGGCCGGGGCAACCCAGCCATC
CAGGCTTATTGGAGGCCCTGGCTCTAGATTCTGAAGGCAGCGGCTCCGTC
TCAAGACAGGGACATGTGTCgcaaggagggtggtggtTTCGAGCCGAGAG
TTTGCAAGAAAAGCTGGTGTGGATGGCCAAGATCCGGGAAAGCATCTCAC
TCGCCGCCTGGTGGTCGGGCCTGCGCTTTGGCCCCTCtttgggcgaggga
ggcttcAGCCAAGTATTGGAAATGCAGGACACGCGCACGGGCGAGAGGCT
GGCGGTGAAAGTGATGCAGGCGCGCCGGCGCATGGAGCGGGACCAGGCGC
TGGCTGAAACAGACATCTTGGCCCTGGTGGGTCGTCGGGTCCGGCACCCA
CATCTGATGGCCCCGCGGCGCGTTTATGTGGAGGGCGATCGCGTCTGGAT
CATGTTCCCTTTGTGCACGGGCGGGGATTTGTTCCAGCGCCTGCTTAGAA
AGGGGcgcgggccggagggggaggcggctaGCATCAtgctgcgcctcctc
tctGCGGTTCAGGCCCTGCACCAACACGGAATTCTGCACCTGGACATCAA
GCCCGAGAACGTTCTAttcgcgagggaggacgatcCGTCGGAGATCTTGC
TCACGGACTTCGGACTGTCGCGGAGGATCCACCGGGCGGAGCGTCAAGGA
GCAAGGGACCAGCAGCCCGCAGGAGCAAGCAGGGTTGGCTCGAACGCAAG
TGACTCTAGTGACgattcggaggaggaggatgagagcgCCGTCCTCGGTC
AGGATCGCGACTACTTCTCGCGCCTGCGGTACAACATGGCCTTCGACGAA
CGCGTGAACGGCACCGTCGGCTATATGGCGCCCGAGGTGGTGCTGCACAA
GCGCTACACTCCTGCGGCCGATGTCTGGTGTCTCGGAGTGGTTTTGCATA
TACTACTGGTCGGTTACGCACCTTTTCAGGATGCGCGGCAGGTGCGGGGT
AGTACAGAGAGGCTTCACAGCAGTCATCAAGACGCGCTGGAACGCTCGGT
GCGGGGGGAGTTTGTCATGGACGAACTGGACTGGGCCCGCGTATCGCCAG
CAGCGACAGATCTGACGCGGCGGATGTTGACACTAGATGAATCAAGGCGC
ATCAGTGTAGCAGAGGCCTTGAGACATGCATGGTTGCAGGAAGCTCTGGG
TGGCATAGAGAAGGTAGCAGTCAGGGAAACGAGATGGGACACTGTCTCGT
CTTTGGCGTGCGCGATCATGCAAAAGCCCTCCACGCCATCAGACCCTCAG
CGCAAGCATGCCCGCTCTTTAGATCGCACCTCTCAgcagtcctcctcgtc
ttttcGTGCTATGTTCAACGAGGTCATCACTCGCGggtcttccttcttgt
cttCCATCACAAGTACCAAAACGTCCCCTCCCActtcgtcctcatcttcc
tcatcctcgtcctcctcatcgtaG

Coding sequence (CDS) from alignment at CM002467.1:435243..437366+

>rna6044 ID=rna6044|Name=rna6044|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002467.1:435243..437366+ (Nannochloropsis gaditana)
ATGTTTGCCCCGCCACTGCATGTGACGTACAAGGTGTACGGGAAAAGCGC
AGAGTCCCACCCGGATCTCGACGACCGGAGCTTGCAGGTTGCCATGGAAG
ACCGTCTGGCGCAGCATCGGTTACAACGACAGCGACGCCGACGTCGACTG
CGTGGTACGCTTGAGAAATCGAGGGGACGGAGTGAGGAAGTCGGCGTAGA
AGCGAGAGCGTGTAGCGGAACAGGTCTCAATCTCGAGGACCAAGCATATA
TCTTTTCCCCGGCTCGGGAAGGTTGGCTGATAAAGCGAGGCTCGGGCGGG
TTGCGGATGTGGCGTCGACGCTGGGTGGGGCTGGCCAATAGGAAGCTCTG
GTATGCCAATGGACCTGCTGGTcccgggggtgggggcgggaacTGTGTCG
CAGGGAGTCCTGAGAAGGGATCGATTGGGTGCATGGAACTCACGCAGTGG
AGCCAAGTGGAAGAGGTTGCTAGCGCCGACGGCCTGGTCTTTCGCGTTGT
TTTTGGCAGCCCAGAAGACACAGAAGCCGATAATAGGACGGGAGGTCAGG
CGGAGACGCACAGTGTCAGCCCTGAAGCCGAGAGCAGGcctttcgccgcc
gccggccgcccgccttctttcctggacccggtggaggagctcgccaGCAA
CCGCCGTGAAGACAGTAGTACTACTGAGTGGCCGGGGCAACCCAGCCATC
CAGGCTTATTGGAGGCCCTGGCTCTAGATTCTGAAGGCAGCGGCTCCGTC
TCAAGACAGGGACATGTGTCgcaaggagggtggtggtTTCGAGCCGAGAG
TTTGCAAGAAAAGCTGGTGTGGATGGCCAAGATCCGGGAAAGCATCTCAC
TCGCCGCCTGGTGGTCGGGCCTGCGCTTTGGCCCCTCtttgggcgaggga
ggcttcAGCCAAGTATTGGAAATGCAGGACACGCGCACGGGCGAGAGGCT
GGCGGTGAAAGTGATGCAGGCGCGCCGGCGCATGGAGCGGGACCAGGCGC
TGGCTGAAACAGACATCTTGGCCCTGGTGGGTCGTCGGGTCCGGCACCCA
CATCTGATGGCCCCGCGGCGCGTTTATGTGGAGGGCGATCGCGTCTGGAT
CATGTTCCCTTTGTGCACGGGCGGGGATTTGTTCCAGCGCCTGCTTAGAA
AGGGGcgcgggccggagggggaggcggctaGCATCAtgctgcgcctcctc
tctGCGGTTCAGGCCCTGCACCAACACGGAATTCTGCACCTGGACATCAA
GCCCGAGAACGTTCTAttcgcgagggaggacgatcCGTCGGAGATCTTGC
TCACGGACTTCGGACTGTCGCGGAGGATCCACCGGGCGGAGCGTCAAGGA
GCAAGGGACCAGCAGCCCGCAGGAGCAAGCAGGGTTGGCTCGAACGCAAG
TGACTCTAGTGACgattcggaggaggaggatgagagcgCCGTCCTCGGTC
AGGATCGCGACTACTTCTCGCGCCTGCGGTACAACATGGCCTTCGACGAA
CGCGTGAACGGCACCGTCGGCTATATGGCGCCCGAGGTGGTGCTGCACAA
GCGCTACACTCCTGCGGCCGATGTCTGGTGTCTCGGAGTGGTTTTGCATA
TACTACTGGTCGGTTACGCACCTTTTCAGGATGCGCGGCAGGTGCGGGGT
AGTACAGAGAGGCTTCACAGCAGTCATCAAGACGCGCTGGAACGCTCGGT
GCGGGGGGAGTTTGTCATGGACGAACTGGACTGGGCCCGCGTATCGCCAG
CAGCGACAGATCTGACGCGGCGGATGTTGACACTAGATGAATCAAGGCGC
ATCAGTGTAGCAGAGGCCTTGAGACATGCATGGTTGCAGGAAGCTCTGGG
TGGCATAGAGAAGGTAGCAGTCAGGGAAACGAGATGGGACACTGTCTCGT
CTTTGGCGTGCGCGATCATGCAAAAGCCCTCCACGCCATCAGACCCTCAG
CGCAAGCATGCCCGCTCTTTAGATCGCACCTCTCAgcagtcctcctcgtc
ttttcGTGCTATGTTCAACGAGGTCATCACTCGCGggtcttccttcttgt
cttCCATCACAAGTACCAAAACGTCCCCTCCCActtcgtcctcatcttcc
tcatcctcgtcctcctcatcgtaG

Synonyms

Publications