rna6042, rna6042 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6042
Unique Name	rna6042
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1818
Alignment location	CM002467.1:432454..434397 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100055g12.7336.mrna
Orig protein id	gnl\|cribi\|Naga_100055g12.7336
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:432454..434397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g12	gene5837	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6042	rna6042-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24652.1	cds6027	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:432454..434397+
coding sequence from alignment at CM002467.1:432454..434397+

mRNA sequence

>rna6042 ID=rna6042|Name=rna6042|organism=Nannochloropsis gaditana|type=mRNA|length=1818bp
ATGCTTTTGGATGTTGCACGCTCACTAGTCAATGCAATGCAGCGTCGACT
CTTGCCCTCACGAGCGTTAGGTAACTCACGGAGCAGAAAGAGGTTACGAG
ATGGCCCTCGGCGCCCTGTCGACATCAGAAGAGCGCAGCATGCCTGTCCG
AGCTCTCCCTCTTCACCTCCCGGCTTGCAACGGAGAGTGACTCGAACGAA
CTATAGCACGCAATCGCAACAGTCTGCTGTATCGATGGTCGAGATTGCAG
CAGCGATCAGAAAAGGAAATGCTGATCCTTTCAGTGTTATGCAGCGTTGC
CTGTCGCGTCAGCAGGAGACGTCAGGTCTGAATTCTTTCGTTACAGTTTT
GCGACATGCTGCGGAGAAGGAGGCTGCTGTTGCAGGCCGCCACAGCGTGA
TGAAGGGACCGCTTCACGGCATCCCGATTGCGGTCAAGGATAATTTTTGC
ACTGCCGGTGTGAGGACGACCGCCTCCTCAAGGATGCTTGCAAATTTCGT
TCCTCCTTACTCGGCCACAGCGGTGTCTCGGCTGGAGGCATCGGGGGCGA
TAGTGGTCGGGAAGACAAATATGGACGAGTTCGGCATGGGCTCAGCGACA
CTCTTCTCCCACTTTGGGAAGACAATCAACCCTTGGTCGCAAGCCGCCGA
GAAGGGCGACAAGCCTCGGCTGGCGGCGGGGGGCAGCTCAGGAGGAAGTG
CCGTAGCAGTGGCCACAGGGAGTGCTCTAGCCGCCCTAGGTTCGGACACT
GGGGGATCTGTGCGGCAGCCGGCAGCGTTTTGTGGGCTGGTCGGCCTGAA
GCCCACCTACGGACGGGTCTCGCGCCACGGGCTCATCGCCTACGCCTCCT
CTCTCGACTGTCCAGGCGTGCTCACGCGGACTGTGGCGGACGCAGCCCTG
GTCTTGGACGTAGTGGCAGGGCGAGACCCGCTGGACTCAACCTGTCTGGA
GCAGCCTCACCGCCCCTGCTTCGACAGGACCATGGAAGCGGCCGCCAGCA
GCCGGGCGGCCGGCCTGGCAGTCTCCTTGCGCGGGCTCAAGGTGGGAATT
CCTGCTGAGTTCGCCATTCAGGAACTTGAGGGAAGTGCGGTGACGGCCTG
GGAAGAGGGAGCGCGACTGTTGCGCGATGCCGGTGCAGACGTGCTGCCCG
TGTCTGTCCCCTCCATTCCGCTCGCCCTCCCGACCTACTTTGTCATCGCC
TGCGCGGAGGCTTCCTCGAACTTGGCACGGTACGACGGAATTCGGTTTGG
CTTTCGGGGATCAAAGAGCTTGCGGGCATCTCGCTCCAAGGAGGGCATTG
GGAGTGCCGATACCGAGGAAGACGACCAACGAGCGTTGCACGACTTCATC
ACGGCCTCTCGATCTCAGGGGTTTGGAGATGAAGTGCAGCGTCGCGTCAT
CTCAGGGTGTCGCGTTCTTTCTGCTCAAGCGTACGCGACTTACTATGAAA
AGGCCCTGGCAGCCAGGATACGCCTTCGTCGGGAAATGAACACGGCCTTG
AGCCACGTGGACGTCCTCCTCACCCCCGTCACTCCCACGGGTCCATTCCC
CTTGACCACTCCGGCCGAGCCTGCTGCCCTCATGGTCAACGATGTCATGA
CCGTCCCCGCCAGCTTGGCCGGACTACCTGCTATCGCTGTCCCGGTGGAC
TTGGCGCCTTCCTCCTTTGTCCCGGGGTTGCCAGTGCCCGTAGGCTTGCA
ACTGATCGGCCGCCATCTGTGCGAGCAACAGTTGCTGATCGTTGCCCGAG
CCTTGGAGGTCCGATGTAATTTTAGTGAGAGAATACCCGACTATGTCGTA
AAAGCCACATTTACGTGA

protein sequence of rna6042

>rna6042-protein ID=rna6042-protein|Name=rna6042|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MRRILVSLLLAREVMGFLPPCLPHQEAAHVPVTMSPRGTSSPSALAAWSG
GGGEYDLLKGNNNVDRTSDGNLPEFDLLGGKAQKEASVIREDPHDTLLAE
LIFTTEDVREVIYKRLEDCNSGFADFLEGRISMATDLEERQALRSLVEMI
EAVKKAVERKKVEDTVRIREEQLRQLEEEARLAAERAEARKRPTWQEGEV
KDSSEREEYAQSMGTDVAPSVREDVEASALAMDPKQSYEQLLEAFLGLDF
GKEEYVREVVEANYERCTMEFLDLLGERLKDDSTPPGVQSRLMALKGHIE
DILRARMSRAAERLQSIVKAGALDEMVDQVYELNQRNEVDEPLILLLETN
VQQAERAGAAPAAELFRKLLATAREAIDEKLSMSTRLVRRLLRVADPEKR
KEILHDAFRPKASALTAEGAKTGAMPDVPPPDFIEELRQLIKNFGNIETD
NFAEKLRTLVEEAEEVSTTIYGKAMSHREQQDYMWQKGSISVFDLEALEG
KAQAVGDQMPWQNDAYDNMMPPGFEDGVRTIGGNDKSSKMRKGCRDVEAC
CPEGQAFSLEKENYS

mRNA from alignment at CM002467.1:432454..434397+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6042 ID=rna6042|Name=rna6042|organism=Nannochloropsis gaditana|type=mRNA|length=1944bp|location=Sequence derived from alignment at CM002467.1:432454..434397+ (Nannochloropsis gaditana)
ATGCGACGCATATTAGTCAGTCTCCTGCTCGCACGCGAGGTGATGGGTTT
TCTgcccccatgcctccctcatcaGGAAGCAGCACACGTCCCTGTCACCA
TGTCTCCACGCGGTACCTCATCACCATCTGCGTTGGCAGCCTggagcggc
ggcggaggagaataCGACTTACTCAAAGGCAATAATAACGTGGATAGGAC
CAGCGATGGTAATCTACCTGAGTTCGATTTGCTCGGTGGGAAAGCACAGA
AAGAAGCGTCCGTGATAAGGGAGGTCCGTGAGGGTGGGCACTCCGAAAca
acaagaggaagaacgtGGTCACAGGGGTGCTCAGTTCAAATATTGTGCAT
ACACTGTTCTTTCTCCTGCACCTGTCACTTACTTTCCGCGTCCTTTCCTG
CTCTACAGCTCTCAAAATAGCTAAGCTTACACTCATTTCTTTTGATTATC
GATATCAGGACCCTCATGACACTTTGCTGGCGGAGCTTATCTTCACAACG
GAGGATGTACGGGAAGTGATATACAAACGTTTGGAGGACTGTAATTCGGG
TTTTGCTGATTTCTTAGAAGGTCGCATCAGCATGGCGACAGATTTGGAAG
AACGGCAGGCGTTGCGCTCATTGGTGGAGATGATTGAGGCGGTTAAGAAA
GCCGTTGAGCGCAAAAAAGTGGAGGATACCGTGCGGATCAGGGAAGAGCA
GCTACGGcagttggaagaggaggcccgCCTGGCAGCCGAAAGGGCTGAGG
CAAGGAAGCGCCCGActtggcaggagggggaggtcaaaGATTCGAGTGAG
CGGGAGGAATATGCGCAGAGCATGGGCACAGACGTTGCCCCGTCAGTGAG
AGAAGATGTGGAGGCATCGGCGCTGGCCATGGACCCGAAGCAGAGCTATG
AGCAGCTGCTGGAGGCTTTTCTTGGTCTGGACTTtggcaaggaggagtac
gtgcgagaagtggtggaggcgaaCTACGAGCGGTGCACCATGGAGTTCTT
GGACCTATTGGGAGAGCGTTTGAAAGATGACTCCACGCCGCCCGGAGTGC
AATCGCGTCTAATGGCCCTGAAGGGGCACATCGAAGACATACTGCGGGCG
AGGATGTCGCGAGCCGCTGAGCGCCTCCAGTCCATTGTCAAGGCGGGCGC
CTTGGACGAAATGGTGGATCAGGTCTACGAGTTGAATCAAAGGAACGAAG
TCGATGAGCCCCTGATCTTGCTTTTGGAAACAAATGTCCAGCAGGCAGAG
CGCGCCGGTGCAGCGCCGGCTGCAGAGCTTTTTCGCAAGCTCCTAGCCAC
GGCCAGAGAGGCAATCGATGAGAAGCTGAGCATGTCCACTCGCCTTGTCC
GGCGACTTCTACGAGTGGCTGACCCAGAAAAGCGGAAAGAGATCCTCCAC
GACGCCTTCCGAcccaaggcctccgccctAACTGCGGAGGGGGCTAAGAC
GGGGGCTATGCCGGATGTGCCTCCGCCCGACTTCATAGAAGAATTGCGGC
AACTGATTAAAAACTTTGGCAACATCGAGACCGACAATTTTGCAGAGAAA
TTGCGCACCTTGGtcgaagaagcagaggaggtctCCACGACCATCTACGG
AAAAGCGATGTCTCACCGCGAGCAGCAGGACTATATGTGGCAGAAGGGCT
CGATTTCGGTCTTCGATTTGGAAGctctggagggaaaggctcAGGCCGTT
GGTGACCAAATGCCTTGGCAGAACGACGCGTACGATAATATGATGCCCCC
AGGTTTTGAAGATGGTGTTCGTACCATCGGTGGAAACGATAAGAGTAGTT
TTTAATCGCGAGTCCGGTATTCTCATATTTTCTTAATTGCCCCCTTAACG
AAAAAAAGGTaaaatgaggaagggatgtCGTGACGTGGAAGCCTGTTGCC
CTGAAGGACAAGCATTCTcacttgaaaaagaaaattatTCATAA

Coding sequence (CDS) from alignment at CM002467.1:432454..434397+

>rna6042 ID=rna6042|Name=rna6042|organism=Nannochloropsis gaditana|type=CDS|length=5094bp|location=Sequence derived from alignment at CM002467.1:432454..434397+ (Nannochloropsis gaditana)
ATGCGACGCATATTAGTCAGTCTCCTGCTCGCACGCGAGGTGATGGGTTT
TCTgcccccatgcctccctcatcaGGAAGCAGCACACGTCCCTGTCACCA
TGTCTCCACGCGGTACCTCATCACCATCTGCGTTGGCAGCCTggagcggc
ggcggaggagaataCGACTTACTCAAAGGCAATAATAACGTGGATAGGAC
CAGCGATGGTAATCTACCTGAGTTCGATTTGCTCGGTGGGAAAGCACAGA
AAGAAGCGTCCGTGATAAGGGAGGACCCTCATGACACTTTGCTGGCGGAG
CTTATCTTCACAACGGAGGATGTACGGGAAGTGATATACAAACGTTTGGA
GGACTGTAATTCGGGTTTTGCTGATTTCTTAGAAGGTCGCATCAGCATGG
CGACAGATTTGGAAGAACGGCAGGCGTTGCGCTCATTGGTGGAGATGATT
GAGGCGGTTAAGAAAGCCGTTGAGCGCAAAAAAGTGGAGGATACCGTGCG
GATCAGGGAAGAGCAGCTACGGcagttggaagaggaggcccgCCTGGCAG
CCGAAAGGGCTGAGGCAAGGAAGCGCCCGActtggcaggagggggaggtc
aaaGATTCGAGTGAGCGGGAGGAATATGCGCAGAGCATGGGCACAGACGT
TGCCCCGTCAGTGAGAGAAGATGTGGAGGCATCGGCGCTGGCCATGGACC
CGAAGCAGAGCTATGAGCAGCTGCTGGAGGCTTTTCTTGGTCTGGACTTt
ggcaaggaggagtacgtgcgagaagtggtggaggcgaaCTACGAGCGGTG
CACCATGGAGTTCTTGGACCTATTGGGAGAGCGTTTGAAAGATGACTCCA
CGCCGCCCGGAGTGCAATCGCGTCTAATGGCCCTGAAGGGGCACATCGAA
GACATACTGCGGGCGAGGATGTCGCGAGCCGCTGAGCGCCTCCAGTCCAT
TGTCAAGGCGGGCGCCTTGGACGAAATGGTGGATCAGGTCTACGAGTTGA
ATCAAAGGAACGAAGTCGATGAGCCCCTGATCTTGCTTTTGGAAACAAAT
GTCCAGCAGGCAGAGCGCGCCGGTGCAGCGCCGGCTGCAGAGCTTTTTCG
CAAGCTCCTAGCCACGGCCAGAGAGGCAATCGATGAGAAGCTGAGCATGT
CCACTCGCCTTGTCCGGCGACTTCTACGAGTGGCTGACCCAGAAAAGCGG
AAAGAGATCCTCCACGACGCCTTCCGAcccaaggcctccgccctAACTGC
GGAGGGGGCTAAGACGGGGGCTATGCCGGATGTGCCTCCGCCCGACTTCA
TAGAAGAATTGCGGCAACTGATTAAAAACTTTGGCAACATCGAGACCGAC
AATTTTGCAGAGAAATTGCGCACCTTGGtcgaagaagcagaggaggtctC
CACGACCATCTACGGAAAAGCGATGTCTCACCGCGAGCAGCAGGACTATA
TGTGGCAGAAGGGCTCGATTTCGGTCTTCGATTTGGAAGctctggaggga
aaggctcAGGCCGTTGGTGACCAAATGCCTTGGCAGAACGACGCGTACGA
TAATATGATGCCCCCAGGTTTTGAAGATGGTGTTCGTACCATCGGTGGAA
ACGATAAGAGTAGTaaaatgaggaagggatgtCGTGACGTGGAAGCCTGT
TGCCCTGAAGGACAAGCATTCTcacttgaaaaagaaaattatTCATAAAT
GCGACGCATATTAGTCAGTCTCCTGCTCGCACGCGAGGTGATGGGTTTTC
TgcccccatgcctccctcatcaGGAAGCAGCACACGTCCCTGTCACCATG
TCTCCACGCGGTACCTCATCACCATCTGCGTTGGCAGCCTggagcggcgg
cggaggagaataCGACTTACTCAAAGGCAATAATAACGTGGATAGGACCA
GCGATGGTAATCTACCTGAGTTCGATTTGCTCGGTGGGAAAGCACAGAAA
GAAGCGTCCGTGATAAGGGAGGACCCTCATGACACTTTGCTGGCGGAGCT
TATCTTCACAACGGAGGATGTACGGGAAGTGATATACAAACGTTTGGAGG
ACTGTAATTCGGGTTTTGCTGATTTCTTAGAAGGTCGCATCAGCATGGCG
ACAGATTTGGAAGAACGGCAGGCGTTGCGCTCATTGGTGGAGATGATTGA
GGCGGTTAAGAAAGCCGTTGAGCGCAAAAAAGTGGAGGATACCGTGCGGA
TCAGGGAAGAGCAGCTACGGcagttggaagaggaggcccgCCTGGCAGCC
GAAAGGGCTGAGGCAAGGAAGCGCCCGActtggcaggagggggaggtcaa
aGATTCGAGTGAGCGGGAGGAATATGCGCAGAGCATGGGCACAGACGTTG
CCCCGTCAGTGAGAGAAGATGTGGAGGCATCGGCGCTGGCCATGGACCCG
AAGCAGAGCTATGAGCAGCTGCTGGAGGCTTTTCTTGGTCTGGACTTtgg
caaggaggagtacgtgcgagaagtggtggaggcgaaCTACGAGCGGTGCA
CCATGGAGTTCTTGGACCTATTGGGAGAGCGTTTGAAAGATGACTCCACG
CCGCCCGGAGTGCAATCGCGTCTAATGGCCCTGAAGGGGCACATCGAAGA
CATACTGCGGGCGAGGATGTCGCGAGCCGCTGAGCGCCTCCAGTCCATTG
TCAAGGCGGGCGCCTTGGACGAAATGGTGGATCAGGTCTACGAGTTGAAT
CAAAGGAACGAAGTCGATGAGCCCCTGATCTTGCTTTTGGAAACAAATGT
CCAGCAGGCAGAGCGCGCCGGTGCAGCGCCGGCTGCAGAGCTTTTTCGCA
AGCTCCTAGCCACGGCCAGAGAGGCAATCGATGAGAAGCTGAGCATGTCC
ACTCGCCTTGTCCGGCGACTTCTACGAGTGGCTGACCCAGAAAAGCGGAA
AGAGATCCTCCACGACGCCTTCCGAcccaaggcctccgccctAACTGCGG
AGGGGGCTAAGACGGGGGCTATGCCGGATGTGCCTCCGCCCGACTTCATA
GAAGAATTGCGGCAACTGATTAAAAACTTTGGCAACATCGAGACCGACAA
TTTTGCAGAGAAATTGCGCACCTTGGtcgaagaagcagaggaggtctCCA
CGACCATCTACGGAAAAGCGATGTCTCACCGCGAGCAGCAGGACTATATG
TGGCAGAAGGGCTCGATTTCGGTCTTCGATTTGGAAGctctggagggaaa
ggctcAGGCCGTTGGTGACCAAATGCCTTGGCAGAACGACGCGTACGATA
ATATGATGCCCCCAGGTTTTGAAGATGGTGTTCGTACCATCGGTGGAAAC
GATAAGAGTAGTaaaatgaggaagggatgtCGTGACGTGGAAGCCTGTTG
CCCTGAAGGACAAGCATTCTcacttgaaaaagaaaattatTCATAAATGC
GACGCATATTAGTCAGTCTCCTGCTCGCACGCGAGGTGATGGGTTTTCTg
cccccatgcctccctcatcaGGAAGCAGCACACGTCCCTGTCACCATGTC
TCCACGCGGTACCTCATCACCATCTGCGTTGGCAGCCTggagcggcggcg
gaggagaataCGACTTACTCAAAGGCAATAATAACGTGGATAGGACCAGC
GATGGTAATCTACCTGAGTTCGATTTGCTCGGTGGGAAAGCACAGAAAGA
AGCGTCCGTGATAAGGGAGGACCCTCATGACACTTTGCTGGCGGAGCTTA
TCTTCACAACGGAGGATGTACGGGAAGTGATATACAAACGTTTGGAGGAC
TGTAATTCGGGTTTTGCTGATTTCTTAGAAGGTCGCATCAGCATGGCGAC
AGATTTGGAAGAACGGCAGGCGTTGCGCTCATTGGTGGAGATGATTGAGG
CGGTTAAGAAAGCCGTTGAGCGCAAAAAAGTGGAGGATACCGTGCGGATC
AGGGAAGAGCAGCTACGGcagttggaagaggaggcccgCCTGGCAGCCGA
AAGGGCTGAGGCAAGGAAGCGCCCGActtggcaggagggggaggtcaaaG
ATTCGAGTGAGCGGGAGGAATATGCGCAGAGCATGGGCACAGACGTTGCC
CCGTCAGTGAGAGAAGATGTGGAGGCATCGGCGCTGGCCATGGACCCGAA
GCAGAGCTATGAGCAGCTGCTGGAGGCTTTTCTTGGTCTGGACTTtggca
aggaggagtacgtgcgagaagtggtggaggcgaaCTACGAGCGGTGCACC
ATGGAGTTCTTGGACCTATTGGGAGAGCGTTTGAAAGATGACTCCACGCC
GCCCGGAGTGCAATCGCGTCTAATGGCCCTGAAGGGGCACATCGAAGACA
TACTGCGGGCGAGGATGTCGCGAGCCGCTGAGCGCCTCCAGTCCATTGTC
AAGGCGGGCGCCTTGGACGAAATGGTGGATCAGGTCTACGAGTTGAATCA
AAGGAACGAAGTCGATGAGCCCCTGATCTTGCTTTTGGAAACAAATGTCC
AGCAGGCAGAGCGCGCCGGTGCAGCGCCGGCTGCAGAGCTTTTTCGCAAG
CTCCTAGCCACGGCCAGAGAGGCAATCGATGAGAAGCTGAGCATGTCCAC
TCGCCTTGTCCGGCGACTTCTACGAGTGGCTGACCCAGAAAAGCGGAAAG
AGATCCTCCACGACGCCTTCCGAcccaaggcctccgccctAACTGCGGAG
GGGGCTAAGACGGGGGCTATGCCGGATGTGCCTCCGCCCGACTTCATAGA
AGAATTGCGGCAACTGATTAAAAACTTTGGCAACATCGAGACCGACAATT
TTGCAGAGAAATTGCGCACCTTGGtcgaagaagcagaggaggtctCCACG
ACCATCTACGGAAAAGCGATGTCTCACCGCGAGCAGCAGGACTATATGTG
GCAGAAGGGCTCGATTTCGGTCTTCGATTTGGAAGctctggagggaaagg
ctcAGGCCGTTGGTGACCAAATGCCTTGGCAGAACGACGCGTACGATAAT
ATGATGCCCCCAGGTTTTGAAGATGGTGTTCGTACCATCGGTGGAAACGA
TAAGAGTAGTaaaatgaggaagggatgtCGTGACGTGGAAGCCTGTTGCC
CTGAAGGACAAGCATTCTcacttgaaaaagaaaattatTCATAA

Synonyms

Publications