rna6041, rna6041 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6041
Unique Name	rna6041
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1053
Alignment location	CM002467.1:430004..431942 +

Link to JBrowse

Properties


Property Name	Value
Product	amidotransferase a subunit for asp-trna glu-trna
Orig transcript id	gnl\|cribi\|Naga_100055g13.7350.mrna
Orig protein id	gnl\|cribi\|Naga_100055g13.7350
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:430004..431942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g13	gene5836	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6041	rna6041-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24666.1	cds6026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:430004..431942+
coding sequence from alignment at CM002467.1:430004..431942+

mRNA sequence

>rna6041 ID=rna6041|Name=rna6041|organism=Nannochloropsis gaditana|type=mRNA|length=1053bp
ATGGGGAGGGTGGCGGAGGGGTGCGGGAATGGGGCCGTTGAGTTTCATTG
CGTTCGTAACAAGCGAAGACACATAATTACTCATGACCAAATGGCCGTGA
ATTCTCTTCCTGAACAAGTTGTTGTGTCTAGCATGCCTGATATCTCATGT
CGCAGGGACAAAGTCAAAAGGCTAGCGTCCCCTACCATGAGAAATATGCA
TGAACCCCGGACCACAGGAAGAGCAGCAGGGGGTAGCCGTGGTGCCACTC
CGACGAATCTGCATGGGAACATGAACTCAAGCTCACAAACTGACTCGCGA
TTTGACTGCAACGTGTGCCTGTCCGAGGTGGGGGATCCCGTCGTAACCTT
GTGCGGGCACTTGTACTGCTGGCCATGCTTGTACCGGTGGCTGAGCACAA
ATCATACTTGTCCCGTGTGCAAGGCAGGCGTGACGAAGGAGAACGTGATT
CCTCTCTACGGGAGGGGAAGCGAGCAGGTGGATCCAAGGACCAAGACCCG
TCGAGGCGGGGCGATCGGTAGGGAGGAAGCAACAGACGTCCCAGGACGGC
CTGCAGCACAACGTCCTGAGGCACGACCTGAAGCAGACTCATTTATTGGC
GGCGCATCAGCATTCGTGGGTGGAATTCCTTTCAATTCCTTCGGCGCAGC
TCATCATTACACGGGCGGCACCATAGGAGGACTGGGACCTCCCGGGAGAA
ACAGTGCAGTCTCCTTTTCGGCTGGCTTGGGTTTTTTCCCCTCATTGTTT
GGACTACAATTTCAAACTTTTACGCCATCATCATCTTCGTCTGTGGCTGC
GACGCAAGGGGTCGGATTTAATGGAAGCGGGAATGGTTCTACAGCCGATG
AAGCACAGCAAGCATTTCTTTCAAAGCTTCTTCTTACTCTAGGAATATTT
ACTCTTGGTGTGCTCATACAACTAACGCGAAAAAAAAAAGAAGGAAAGAT
TTCTGATGGGTCTGATAGGCACGTCAGGAGACAAGAAGACGCTAAAATGA
TTGAACACAGGAAAGAAAATTGTCAAGGCACCATTCAATTCATCCATCTT
TAA

protein sequence of rna6041

>rna6041-protein ID=rna6041-protein|Name=rna6041|organism=Nannochloropsis gaditana|type=polypeptide|length=605bp
MLLDVARSLVNAMQRRLLPSRALGNSRSRKRLRDGPRRPVDIRRAQHACP
SSPSSPPGLQRRVTRTNYSTQSQQSAVSMVEIAAAIRKGNADPFSVMQRC
LSRQQETSGLNSFVTVLRHAAEKEAAVAGRHSVMKGPLHGIPIAVKDNFC
TAGVRTTASSRMLANFVPPYSATAVSRLEASGAIVVGKTNMDEFGMGSAT
LFSHFGKTINPWSQAAEKGDKPRLAAGGSSGGSAVAVATGSALAALGSDT
GGSVRQPAAFCGLVGLKPTYGRVSRHGLIAYASSLDCPGVLTRTVADAAL
VLDVVAGRDPLDSTCLEQPHRPCFDRTMEAAASSRAAGLAVSLRGLKVGI
PAEFAIQELEGSAVTAWEEGARLLRDAGADVLPVSVPSIPLALPTYFVIA
CAEASSNLARYDGIRFGFRGSKSLRASRSKEGIGSADTEEDDQRALHDFI
TASRSQGFGDEVQRRVISGCRVLSAQAYATYYEKALAARIRLRREMNTAL
SHVDVLLTPVTPTGPFPLTTPAEPAALMVNDVMTVPASLAGLPAIAVPVD
LAPSSFVPGLPVPVGLQLIGRHLCEQQLLIVARALEVRCNFSERIPDYVV
KATFT

mRNA from alignment at CM002467.1:430004..431942+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6041 ID=rna6041|Name=rna6041|organism=Nannochloropsis gaditana|type=mRNA|length=1939bp|location=Sequence derived from alignment at CM002467.1:430004..431942+ (Nannochloropsis gaditana)
ATGCTTTTGGATGTTGGCAAGTAAACCGCTCTCCCATTTGCCTGCCAcag
gggggttggggggcTTAGAGCGCCTCTGGAGCACCCCAGCGTGTTTCGCA
AAGCCTCACGCTCACACCACCACTTCAAACAAAACAGCACGCTCACTAGT
CAATGCAATGCAGCGTCGACTCTTGCCCTCACGAGCGTTAGGTAACTCAC
GGAGCAGAAAGAGGTTACGAGATGGCCCTCGGCGCCCTGTCGACATCAGA
AGAGCGCAGCATGCCTGTCcgagctctccctcttcacctcccgGCTTGCA
ACGGAGAGTGACTCGAACGAACTATAGCACGCAATCGCAACAGTCTGCTG
TATCGATGGTCGAGATTGCAGCAGCGATCAGAAAAGGAAATGCTGATCCT
TTCAGTGTTATGCAGCGTTGCCTGTCGCGTCAGCAGGAGACGTCAGGTCT
GAATTCTTTCGTTACAGTTTTGCGACATGctgcggagaaggaggctgctG
TTGCAGGCCGCCACAGCGTGATGAAGGGACCGCTTCACGGCATCCCGATT
GCGGTCAAGGATAATTTTTGCACTGCCGGTGTGAGGACGACCGCCTCCTC
AAGGATGCTTGCAAATTTCGTTCCTCCTTACTCGGCCACAGCGGTGTCTC
GGCTGGAGGCATCGGGGGCGATAGTGGTCGGGAAGACAAATATGGACGAG
TTCGGCATGGGCTCAGCGACACTCTTCTCCCACTTTGGGAAGACAATCAA
CCCTTGGTCGCAAGCCGCCGAGAAGGGCGACAAGCCTCggctggcggcgg
ggggcagcTCAGGAGGAAGTGCCGTAGCAGTGGCCACAGGGAGTGCTCTA
GCCGCCCTAGGTTCGGACACTGGGGGATCTGTGCGGCAGCCGGCAGCGTT
TTGTGGGCTGGTCGGCCTGAAGCCCACCTACGGACGGGTCTCGCGCCACG
GGCTCATCGCCtacgcctcctctctcgacTGTCCAGGCGTGCTCACGCGG
ACTGTGGCGGACGCAGCCCTGGTCTTGGACGTAGTGGCAGGGCGAGACCC
GCTGGACTCAACCTGTCTGGAGCAGCCTCACCGCCCCTGCTTCGACAGGA
CCATGGAAGCGGCCGCCAGCAGCCGGGCGGCCGGCCTGGCAGTCTCCTTG
CGCGGGCTCAAGGTGGGAATTCCTGCTGAGTTCGCCATTCAGGAACTTGA
GGGAAGTGCGGTGACGGcctgggaagagggagcgcgaCTGTTGCGCGATG
CCGGTGCAGACGTGCTGCCCGTGTCTGTCCCCTCCATtccgctcgccctc
ccgacctACTTTGTCATCGCCTGCGCGGAGGCTTCCTCGAACTTGGCACG
GTACGACGGAATTCGGTTTGGCTTTCGGGGATCAAAGAGCTTGCGGGCAT
CTCGCTCCAAGGAGGGCATTGGGAGTGCCGATaccgaggaagacgaccaA
CGAGCGTTGCACGACTTCATCACGGCCTCTCGATCTCAGGGGTTTGGAGA
TGAAGTGCAGCGTCGCGTCATCTCAGGGTGTCGCGTTCTTTCTGCTCAAG
CGTACGCGACTTACTATGAAAAGGCCCTGGCAGCCAGGATACGCCTTCGT
CGGGAAATGAACACGGCCTTGAGCCACGTggacgtcctcctcacccccgt
CACTCCCACGGGTCCATTCCCCTTGACCACTCCGGCCGAGCCTGCTGCCC
TCATGGTCAACGATGTCATGaccgtccccgccagctTGGCCGGACTACCT
GCTATCGCTGTCCCGGTGGACTtggcgccttcctcctttgtcccGGGGTT
GCCAGTGCCCGTAGGCTTGCAACTGATCGGCCGCCATCTGTGCGAGCAAC
AGTTGCTGATCGTTGCCCGAGCCTTGGAGGTCCGATGTAATTTTAGTGAG
AGAATACCCGACTATGTCGTAAAAGCCACATTTACGTGA

Coding sequence (CDS) from alignment at CM002467.1:430004..431942+

>rna6041 ID=rna6041|Name=rna6041|organism=Nannochloropsis gaditana|type=CDS|length=3636bp|location=Sequence derived from alignment at CM002467.1:430004..431942+ (Nannochloropsis gaditana)
ATGCTTTTGGATGTTGCACGCTCACTAGTCAATGCAATGCAGCGTCGACT
CTTGCCCTCACGAGCGTTAGGTAACTCACGGAGCAGAAAGAGGTTACGAG
ATGGCCCTCGGCGCCCTGTCGACATCAGAAGAGCGCAGCATGCCTGTCcg
agctctccctcttcacctcccgGCTTGCAACGGAGAGTGACTCGAACGAA
CTATAGCACGCAATCGCAACAGTCTGCTGTATCGATGGTCGAGATTGCAG
CAGCGATCAGAAAAGGAAATGCTGATCCTTTCAGTGTTATGCAGCGTTGC
CTGTCGCGTCAGCAGGAGACGTCAGGTCTGAATTCTTTCGTTACAGTTTT
GCGACATGctgcggagaaggaggctgctGTTGCAGGCCGCCACAGCGTGA
TGAAGGGACCGCTTCACGGCATCCCGATTGCGGTCAAGGATAATTTTTGC
ACTGCCGGTGTGAGGACGACCGCCTCCTCAAGGATGCTTGCAAATTTCGT
TCCTCCTTACTCGGCCACAGCGGTGTCTCGGCTGGAGGCATCGGGGGCGA
TAGTGGTCGGGAAGACAAATATGGACGAGTTCGGCATGGGCTCAGCGACA
CTCTTCTCCCACTTTGGGAAGACAATCAACCCTTGGTCGCAAGCCGCCGA
GAAGGGCGACAAGCCTCggctggcggcggggggcagcTCAGGAGGAAGTG
CCGTAGCAGTGGCCACAGGGAGTGCTCTAGCCGCCCTAGGTTCGGACACT
GGGGGATCTGTGCGGCAGCCGGCAGCGTTTTGTGGGCTGGTCGGCCTGAA
GCCCACCTACGGACGGGTCTCGCGCCACGGGCTCATCGCCtacgcctcct
ctctcgacTGTCCAGGCGTGCTCACGCGGACTGTGGCGGACGCAGCCCTG
GTCTTGGACGTAGTGGCAGGGCGAGACCCGCTGGACTCAACCTGTCTGGA
GCAGCCTCACCGCCCCTGCTTCGACAGGACCATGGAAGCGGCCGCCAGCA
GCCGGGCGGCCGGCCTGGCAGTCTCCTTGCGCGGGCTCAAGGTGGGAATT
CCTGCTGAGTTCGCCATTCAGGAACTTGAGGGAAGTGCGGTGACGGcctg
ggaagagggagcgcgaCTGTTGCGCGATGCCGGTGCAGACGTGCTGCCCG
TGTCTGTCCCCTCCATtccgctcgccctcccgacctACTTTGTCATCGCC
TGCGCGGAGGCTTCCTCGAACTTGGCACGGTACGACGGAATTCGGTTTGG
CTTTCGGGGATCAAAGAGCTTGCGGGCATCTCGCTCCAAGGAGGGCATTG
GGAGTGCCGATaccgaggaagacgaccaACGAGCGTTGCACGACTTCATC
ACGGCCTCTCGATCTCAGGGGTTTGGAGATGAAGTGCAGCGTCGCGTCAT
CTCAGGGTGTCGCGTTCTTTCTGCTCAAGCGTACGCGACTTACTATGAAA
AGGCCCTGGCAGCCAGGATACGCCTTCGTCGGGAAATGAACACGGCCTTG
AGCCACGTggacgtcctcctcacccccgtCACTCCCACGGGTCCATTCCC
CTTGACCACTCCGGCCGAGCCTGCTGCCCTCATGGTCAACGATGTCATGa
ccgtccccgccagctTGGCCGGACTACCTGCTATCGCTGTCCCGGTGGAC
TtggcgccttcctcctttgtcccGGGGTTGCCAGTGCCCGTAGGCTTGCA
ACTGATCGGCCGCCATCTGTGCGAGCAACAGTTGCTGATCGTTGCCCGAG
CCTTGGAGGTCCGATGTAATTTTAGTGAGAGAATACCCGACTATGTCGTA
AAAGCCACATTTACGTGAATGCTTTTGGATGTTGCACGCTCACTAGTCAA
TGCAATGCAGCGTCGACTCTTGCCCTCACGAGCGTTAGGTAACTCACGGA
GCAGAAAGAGGTTACGAGATGGCCCTCGGCGCCCTGTCGACATCAGAAGA
GCGCAGCATGCCTGTCcgagctctccctcttcacctcccgGCTTGCAACG
GAGAGTGACTCGAACGAACTATAGCACGCAATCGCAACAGTCTGCTGTAT
CGATGGTCGAGATTGCAGCAGCGATCAGAAAAGGAAATGCTGATCCTTTC
AGTGTTATGCAGCGTTGCCTGTCGCGTCAGCAGGAGACGTCAGGTCTGAA
TTCTTTCGTTACAGTTTTGCGACATGctgcggagaaggaggctgctGTTG
CAGGCCGCCACAGCGTGATGAAGGGACCGCTTCACGGCATCCCGATTGCG
GTCAAGGATAATTTTTGCACTGCCGGTGTGAGGACGACCGCCTCCTCAAG
GATGCTTGCAAATTTCGTTCCTCCTTACTCGGCCACAGCGGTGTCTCGGC
TGGAGGCATCGGGGGCGATAGTGGTCGGGAAGACAAATATGGACGAGTTC
GGCATGGGCTCAGCGACACTCTTCTCCCACTTTGGGAAGACAATCAACCC
TTGGTCGCAAGCCGCCGAGAAGGGCGACAAGCCTCggctggcggcggggg
gcagcTCAGGAGGAAGTGCCGTAGCAGTGGCCACAGGGAGTGCTCTAGCC
GCCCTAGGTTCGGACACTGGGGGATCTGTGCGGCAGCCGGCAGCGTTTTG
TGGGCTGGTCGGCCTGAAGCCCACCTACGGACGGGTCTCGCGCCACGGGC
TCATCGCCtacgcctcctctctcgacTGTCCAGGCGTGCTCACGCGGACT
GTGGCGGACGCAGCCCTGGTCTTGGACGTAGTGGCAGGGCGAGACCCGCT
GGACTCAACCTGTCTGGAGCAGCCTCACCGCCCCTGCTTCGACAGGACCA
TGGAAGCGGCCGCCAGCAGCCGGGCGGCCGGCCTGGCAGTCTCCTTGCGC
GGGCTCAAGGTGGGAATTCCTGCTGAGTTCGCCATTCAGGAACTTGAGGG
AAGTGCGGTGACGGcctgggaagagggagcgcgaCTGTTGCGCGATGCCG
GTGCAGACGTGCTGCCCGTGTCTGTCCCCTCCATtccgctcgccctcccg
acctACTTTGTCATCGCCTGCGCGGAGGCTTCCTCGAACTTGGCACGGTA
CGACGGAATTCGGTTTGGCTTTCGGGGATCAAAGAGCTTGCGGGCATCTC
GCTCCAAGGAGGGCATTGGGAGTGCCGATaccgaggaagacgaccaACGA
GCGTTGCACGACTTCATCACGGCCTCTCGATCTCAGGGGTTTGGAGATGA
AGTGCAGCGTCGCGTCATCTCAGGGTGTCGCGTTCTTTCTGCTCAAGCGT
ACGCGACTTACTATGAAAAGGCCCTGGCAGCCAGGATACGCCTTCGTCGG
GAAATGAACACGGCCTTGAGCCACGTggacgtcctcctcacccccgtCAC
TCCCACGGGTCCATTCCCCTTGACCACTCCGGCCGAGCCTGCTGCCCTCA
TGGTCAACGATGTCATGaccgtccccgccagctTGGCCGGACTACCTGCT
ATCGCTGTCCCGGTGGACTtggcgccttcctcctttgtcccGGGGTTGCC
AGTGCCCGTAGGCTTGCAACTGATCGGCCGCCATCTGTGCGAGCAACAGT
TGCTGATCGTTGCCCGAGCCTTGGAGGTCCGATGTAATTTTAGTGAGAGA
ATACCCGACTATGTCGTAAAAGCCACATTTACGTGA

Synonyms

Publications